Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0006960 | OGI:06014740 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:5069135-5071769 | ||||||||
| Gene Symbol | RLCK203, OsRLCK203, PTK8, OsPTK8 | ||||||||||
| DNA seq | gagttaaacaactctattaatcaacgtttcccttagcaaattctttagacaaaaaacatcacgaacaaaggtagtataatacaaatgaatcaaggaccatgtagttttgctatgtacaaattcagtttgtttgttctatgtactcatcagatcacactcggtgggctctccggtcgtttcaccctgctcgcgtaccggccgtcgcgcagcgggctctccgcgtgcacggccgacgtgacgtgcttctttccccgccggctccccctcgccggctcgtcgtcgccggcgtcgccggcggcgctactcccggccgccgccgccgccgcctcctcgccgccgaccgtgaacacgaacgggcccatgggcacgtcgtcgtcgacggcgagcagcggctcgagcgcgtcgacgacgtcgcgcatgcaggggcgcgacttgggcacgctctgcaggcactggtgcgccaccttcgcggcggcgtgcgcggcgcgcgccgagtactgcagctcgaggctggggtccatgatgcggtgcagccggtcggcgcggcggaggtaggggcgcgcccagtccacgaggttctgctcccggccgcgccgccgcttgtcgacggagcggcggccggtgagcagctccagcagaacgacgccgaagctgtacacgtcgctcctcgccgtcaggtggcccgtcaggatgtactccggcgccgcgtacccgtgcgtgcccatcacccgcgtcgtcacgtgcgtcgcgtccccctgcggcccctccttcgccagcccaaagtccgacagcttcgccgtgtaatcctgcaaatttttcccatttgacaagtcagcaaatttggcatcaaagtgtgcctattttaatgggtctattaagatggagtggagttgtggagcgacaaaaacccagctacacctctatagtataaatttatggagcagctccgctaactccgctctaaaattgaagaatctgtaccgtttgacagctctaactctacgtaagttagagttgaaagctgtagttatgccaaatgggacctaagatcataaatattcttgcaactttgttcaaaactaaaaagaacttgtgattttgttgtgcattttgatttcattgatgttgctgtggcgttgtggtagtggttggcatgtaccgtactgacacgacaaagccagtatggcagtttggatcgttgaacttaaaaaaaccgtgggttcctaacgaaccagacaaagccaatcagttctacgcccaacgaccggcttgtgtaataaacaatcaaaggttttgctgctaatttgtcgcattatttgtcgcattattttaattaatcctactgttggaagctacgaTttttgacccggctggaaacagttgacaacgtgcgatccattcgcctgattgggcgtgtcgcgtatacaaaataaacaaccactactacattctcaattcatcctacttgccctacactctgcagcttaacaatgattcaatttttaaactgtgctctcaaattgtaatccccccaaattgcaacacaaatcatgtggtcaacaccaacgaattttgctgtaaattaagcttgctgtgtgatttaccttgtcgagaagaatgttggaggccttgaagtcgcggtagatcaccggcgtctcggcctcgtgcaggaaggcgagccccttcgccgcgccgacggcgatcttcagccgcgtcgaccatggcaacgaagcaagaagatctgcacacccaatgaatcacacactcgattagcaaaagctgcaacagctaacacacggtaattaaccccaaatcatgtggtaattagtaactacttactcttgaacaggtggttctcgaggctgcctcttggcatgtactcgtagaccagcatcctgtgatcatcttggttgcagaatcctaccagcttcaccagatgaggatggctcagcatccccagatacaccacctcagcctgatcacaaaaattaacgagaaaatcattattatcagttcatcatcacatcagacgagctggatgtatgattcggcagcagaagagacagcggcaaactcaccagccactcgcggtggccctggacgccgtcgctgtcgaggtacttgacggcgacgtgctgcgactcgagggcgccggggcggagctcgccgtcgacgaagcccttgtacaccggcccgaacccgccctcgccgaggaagttgctggtggagaagttcttggtcgccgccttgagctcgtccagggtgaaggcgtgcaggttcgtcttcgccagcgtccgcgacaggtcctccagcgacagcgacctgaggttcaccgtcctccgccgccgcagcgccggcctcttccctgcttcctcctccgcctcctcccctcccctcccaaagcacgcaaacagccccctcgccatgcctcgcctgttgatgcccgcaagctgttcgaccgctgctccgcccgaccaatcaaccaaagaagccaagaatcgtcgccgccggagaagaaggcaagtcaagaatcgtcggcggcggagctggtcctccgattcgagctgggagaaggagagatggcgcgggaggtatataaagaagaagtgggtggctttggattggatcagatgct
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| CDS seq | atggcgagggggctgtttgcgtgctttgggaggggaggggaggaggcggaggaggaagcagggaagaggccggcgctgcggcggcggaggacggtgaacctcaggtcgctgtcgctggaggacctgtcgcggacgctggcgaagacgaacctgcacgccttcaccctggacgagctcaaggcggcgaccaagaacttctccaccagcaacttcctcggcgagggcgggttcgggccggtgtacaagggcttcgtcgacggcgagctccgccccggcgccctcgagtcgcagcacgtcgccgtcaagtacctcgacagcgacggcgtccagggccaccgcgagtggctggctgaggtggtgtatctggggatgctgagccatcctcatctggtgaagctggtaggattctgcaaccaagatgatcacaggatgctggtctacgagtacatgccaagaggcagcctcgagaaccacctgttcaagaatcttcttgcttcgttgccatggtcgacgcggctgaagatcgccgtcggcgcggcgaaggggctcgccttcctgcacgaggccgagacgccggtgatctaccgcgacttcaaggcctccaacattcttctcgacaaggaggggccgcagggggacgcgacgcacgtgacgacgcgggtgatgggcacgcacgggtacgcggcgccggagtacatcctgacgggccacctgacggcgaggagcgacgtgtacagcttcggcgtcgttctgctggagctgctcaccggccgccgctccgtcgacaagcggcggcgcggccgggagcagaacctcgtggactgggcgcgcccctacctccgccgcgccgaccggctgcaccgcatcatggaccccagcctcgagctgcagtactcggcgcgcgccgcgcacgccgccgcgaaggtggcgcaccagtgcctgcagagcgtgcccaagtcgcgcccctgcatgcgcgacgtcgtcgacgcgctcgagccgctgctcgccgtcgacgacgacgtgcccatgggcccgttcgtgttcacggtcggcggcgaggaggcggcggcggcggcggccgggagtagcgccgccggcgacgccggcgacgacgagccggcgagggggagccggcggggaaagaagcacgtcacgtcggccgtgcacgcggagagcccgctgcgcgacggccggtacgcgagcagggtgaaacgaccggagagcccaccgagtgtgatctga
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| Protein seq | MARGLFACFGRGGEEAEEEAGKRPALRRRRTVNLRSLSLEDLSRTLAKTNLHAFTLDELKAATKNFSTSNFLGEGGFGPVYKGFVDGELRPGALESQHVAVKYLDSDGVQGHREWLAEVVYLGMLSHPHLVKLVGFCNQDDHRMLVYEYMPRGSLENHLFKNLLASLPWSTRLKIAVGAAKGLAFLHEAETPVIYRDFKASNILLDKEGPQGDATHVTTRVMGTHGYAAPEYILTGHLTARSDVYSFGVVLLELLTGRRSVDKRRRGREQNLVDWARPYLRRADRLHRIMDPSLELQYSARAAHAAAKVAHQCLQSVPKSRPCMRDVVDALEPLLAVDDDVPMGPFVFTVGGEEAAAAAAGSSAAGDAGDDEPARGSRRGKKHVTSAVHAESPLRDGRYASRVKRPESPPSVI |
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| Function | Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0006960 | OsLaMu_06g0006960.01 | Chr06 | 5069281 | 5071769 | - | NAM | ||
| CDS seq | atggcgagggggctgtttgcgtgctttgggaggggaggggaggaggcggaggaggaagcagggaagaggccggcgctgcggcggcggaggacggtgaacctcaggtcgctgtcgctggaggacctgtcgcggacgctggcgaagacgaacctgcacgccttcaccctggacgagctcaaggcggcgaccaagaacttctccaccagcaacttcctcggcgagggcgggttcgggccggtgtacaagggcttcgtcgacggcgagctccgccccggcgccctcgagtcgcagcacgtcgccgtcaagtacctcgacagcgacggcgtccagggccaccgcgagtggctggctgaggtggtgtatctggggatgctgagccatcctcatctggtgaagctggtaggattctgcaaccaagatgatcacaggatgctggtctacgagtacatgccaagaggcagcctcgagaaccacctgttcaagaatcttcttgcttcgttgccatggtcgacgcggctgaagatcgccgtcggcgcggcgaaggggctcgccttcctgcacgaggccgagacgccggtgatctaccgcgacttcaaggcctccaacattcttctcgacaaggaggggccgcagggggacgcgacgcacgtgacgacgcgggtgatgggcacgcacgggtacgcggcgccggagtacatcctgacgggccacctgacggcgaggagcgacgtgtacagcttcggcgtcgttctgctggagctgctcaccggccgccgctccgtcgacaagcggcggcgcggccgggagcagaacctcgtggactgggcgcgcccctacctccgccgcgccgaccggctgcaccgcatcatggaccccagcctcgagctgcagtactcggcgcgcgccgcgcacgccgccgcgaaggtggcgcaccagtgcctgcagagcgtgcccaagtcgcgcccctgcatgcgcgacgtcgtcgacgcgctcgagccgctgctcgccgtcgacgacgacgtgcccatgggcccgttcgtgttcacggtcggcggcgaggaggcggcggcggcggcggccgggagtagcgccgccggcgacgccggcgacgacgagccggcgagggggagccggcggggaaagaagcacgtcacgtcggccgtgcacgcggagagcccgctgcgcgacggccggtacgcgagcagggtgaaacgaccggagagcccaccgagtgtgatctga
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| Protein seq | MARGLFACFGRGGEEAEEEAGKRPALRRRRTVNLRSLSLEDLSRTLAKTNLHAFTLDELKAATKNFSTSNFLGEGGFGPVYKGFVDGELRPGALESQHVAVKYLDSDGVQGHREWLAEVVYLGMLSHPHLVKLVGFCNQDDHRMLVYEYMPRGSLENHLFKNLLASLPWSTRLKIAVGAAKGLAFLHEAETPVIYRDFKASNILLDKEGPQGDATHVTTRVMGTHGYAAPEYILTGHLTARSDVYSFGVVLLELLTGRRSVDKRRRGREQNLVDWARPYLRRADRLHRIMDPSLELQYSARAAHAAAKVAHQCLQSVPKSRPCMRDVVDALEPLLAVDDDVPMGPFVFTVGGEEAAAAAAGSSAAGDAGDDEPARGSRRGKKHVTSAVHAESPLRDGRYASRVKRPESPPSVI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0006960 | OsLaMu_06g0006960.02 | Chr06 | 5069135 | 5071701 | - | IsoSeq | ||
| CDS seq | atgatcacaggatgctggtctacgagtacatgccaagaggcagcctcgagaaccacctgttcaagaatcttcttgcttcgttgccatggtcgacgc |
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| Protein seq | MITGCWSTSTCQEAASRTTCSRIFLLRCHGRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 5069901 | 5070739 | - | OsLaMu_06g0006960.02 | OsLaMu_06g0006960.01,OsLaMu_06g0006960.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.273514 | 9.809897 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0202900 | RBH | 0.992216 | 1.868474 | 1.968511 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g10160 | RBH | 0.789720 | 1.115522 | 0.474575 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0202900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0007170 | RBH | 0.344928 | 12.246493 | 1.667670 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006960 | RBH | 0.0 | 5.998270 | 1.459903 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0007010 | RBH | 0.473464 | 8.692244 | 1.099069 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0007070 | RBH | 0.000000 | 0.244131 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006980 | RBH | 1.152251 | 1.909894 | 6.236747 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0087200 | RBH | 7.860795 | 123.098206 | 0.934802 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006750 | RBH | 0.100511 | 0.349403 | 0.199933 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0086400 | RBH | 12.893954 | 88.812519 | 2.137879 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0007170 | RBH | 0.0 | 0.352080 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0007040 | RBH | 0.599678 | 8.706312 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0007090 | RBH | 0.000000 | 29.292755 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0007120 | RBH | 0.097404 | 0.000000 | 0.190145 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035060 | RBH | 0.162179 | 5.619560 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006840 | RBH | 0.0 | 1.280897 | 1.422751 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0007100 | RBH | 0.657939 | 12.785096 | 3.615483 |
