Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0002610 | OGI:06005800 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:2029698-2034692 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaaacgtcagaaaaaccattcagctaaggcagaaaagcaacatacataacaacatgacaatcgatacaaccaagtatctgcaaacagaatatgtacaatgttgttatagccatcatctctcatattctgccaaacatttcacacacttcaagtacgtttctctgcataggaaacagtaggaattcccagttgaatttgtctcagttcgatatcaaaaagagcacgacgagtgctagtccttcttaaacccaaaatcatcaaacaggccctgaaagtggaagagacaactaatggtcattttgtgtacacttggaatcatggacagagcgtaacgaaggtattctgtagagaacgtttggtcgctgatataatagcatgctaaccttggcatcatttattccataagccacacaatagtgttcctgagaaaagagacaatgtaatgaagaagcggagttgatacacaagctgctagttttgtacgggatccctcaccaataagtggaaattctcatgaacttacctgcatcatatgccactcttcgaactcatcaaacaattccaatcgttcaatcctgcaaccatgcaatttcatgggtgttacaaaaaaaaatagatgttacgtgaggcaagatttaacataatgtccttcgtgaagatcaaatgtaaaactcagaaactcagcatcatacatcagaaatattacctgcgtctttcttcactgtcaatgaaatcattgtatatttttagcatatcccatgcaacagctctctgcaaaaccaatcagtaaatccctagaaacaaatcatattcaaactgtgtcttgagtcttgaccaaatatacctgccatccgtgatcaagaaaaagattttccttgtgacttagggttggtgtagcatttataccaaggagagggcatcctctactctgcattagcaggacaacaaaaggcattgagctatagaataatgctatgaataaagtaataagcacctcaatatatctgtccatgagaaacaaaaagacaggtaccaaccaaaaacaagcaaaacatcacctagcttaaatcatacagtaagatgccctccataaactaagatccacaaacagaagttatttacacaaatgactacaaatatttcatctcaaacttcaacttgtcatgtttgtaatttcaggctgccttcattatgtgcacaataagctaataacttcttatactgcctccttcaattgtcatgcagcaataattagcagttcattgtttaatataggtccaacagctcttgtataaggatagtttatgagaatcaaaggccacaaccgaattgttcaatcaggaaacctgcaatatgcccgactctttggaactaagtaggcctctttgactccgctcagagatatttacccgactctttggaactaaatatgcccgactctttggaattttaagatatatatgttccttcttttAaaaaaggtactataaaggtactatgattggaagcacaaaaaataaggaggtctaTtttttaggtattgtatagttggttgtactttcttgttggcatacaaaaaggtctgcagttgattaaatttacttctcgaacaaatccatgtggcaatcatgcaattctcctataaacattccattacacctcaggggcaaatggctcatgcaccacaagggaataaaggattacaggttacaaaggttcatggacaatctacaagaatgaacaaaggtacctcaaggtttataatcatttgctctccaaatgcatcatctggatggatctgcatcagagtagaagtcaatagtgcaaaaatatatcacatatgagagtggaagagtacaaatgagagaatgatttcacctgctcatataagaaaaagatggcagtggagaacttatcagatgcccaaataacaatagaactggttgaagctgggtctaagtaaattagcacacactctgcaattataaaggtcggcaagctgatgacaacagaaagatttattaagaacttgaaaatttgatcatgattcaagtgttagagacaaaggctacgcgatgcaggtatctgacttgacaatgttcctataggcaagaggtgtacagcataagttcattggctgattaaatgagctaactcctaaaaggggcacttgaatattaatcaaacttctctaaaaataggacaagctatgacatatgaaatagaacaaaacatgaacatttatgttctgacaagtaaattatacatggcataacaggaaaatttagttataaaatataacataagcgaaaaacgtagagggcataaattatgaagctaactgaacttgcactcattgtaaaccataaagatataccacaacaacaaagaacAaaaaaaaaaacttacgtagggtccatttcagccatctgaataactgaatcaagttttggtatatcacgaatatcagcagaaaagagcttgtaatgcgcacttctcacttcacctttttctgaaatatttggccattatcaattaatatcagaacacggaaaataggaaatagcaaattctgtgatatggaaagttcacttcaactcacaattctggccagggtataaatcattttggtcactaagaccattatgctgtcaattaagttataccaagagaaacattcttacaaacagaatgaaatagctacctccaagagaaaatataacaggaactttatacaaaaaaggtactgaataaatcaacataaacgtggagaatggcctctagatggattcaggcaaacaaaaaacaaataaattagcctctagatgtggagaatggcctctagatggttgaagctgggtctaagtaaattagcacacattccttaattgtcattagacacttatttctgctaaagatgcatataagaaaaaggcaccaagtattacggtagatacatatagaaagaacatggtagaaccattagtggggaagatccttagatataaacagggtaggcattaatcgacagtatcatatgcaaatgagagaactaccaattgatatcgaagcttctggtcctaacttttccttcatttgactatagtggttaatgatggcagcctttttgctggttacctgccaatcatcaaaagttgccagaaaagttacttatgcacaaagagaacaagctgctccgctgccattacatgcatcacattatgcagagtactatgctacacttgaaaatagcaaagaaactttatctacctccttgaaatccaactcaacataaaggtatggagcaatgccttcgtcctacagtaacaaatacagcacagactgagagagatgaattgatattaaaaatataccaatatactttgtgaagtttgatcttaaatactgcctccaccaaagcaggatatgataaagatgcaaggcgtactggaacctatttaactagtttatagtaacaaagggcatacagagttaaataaaaatgatataaattattcagatcaaacagtagatctgataatgggccgtaagcatgtgattgtgatgctcatgaatagtgagtaatggataacctgcaactggaagaatgtcgtgtcaaagccagcaccaagagataatatttgtttccggttttgatcattactgccatttccagcaccgaggaactgatgcagaagcttcctaagaacagaccaacgtgcatagtaccctttgcagagttatttggaaaggtaaacaaattagaattttcaaacattttcaattttagagaagcagataaagattcaatgaggcactaccaacctcgatttattattggagccctttttgttgttcgtctgacaaagaagtgcacataatcatccttcatgtatcctttattaacacatgacctgcaaaggaaaaatgaaaatgagtatggcatatagcaagcagcaacagtcaacctctactttgaaaactacaatgacatctatatgtataagcaatacaccacactttccatgcatattgaataacatggaccgtgttacatttatctgttcattgttcaagatagcggcctctgcaatgtcataggcagaagaggtgaaggtagatcatttgctctgcataccaaggtcagtaggccagataagcactggaagttgagatgcccaatcaatttcttcaaaccagtacttaaagcatcaattcactccaaacaaataagcaagaaaatctcaagaaatttcttctgaaacacacaagaatatataaagttgcaagctagctgatccactcaacagaaggacttcattcaaggcaattggtaaaagaggcacatagctcttttcctaccattacacactgatttattgcagagagaaataaaaatagaatcagttcaaaggagtggttatacgacattgcatggtcctacgcagaaaagggtcacctaagtggagcgcgattctggatcttcacataaaaactgtataaaccatccctcttgcttagtacaataattgcattttagcatcacgattcagcatggctttggcttcattttgtcacggtattccattttgtcagggtattcactagcgcaacaaacagtagcagcatagcgcgaccgcggattgatccaaacaagcacaggggcgaccgcttcccgatggcgcctcgtgcaaaggagagaatatcacgcggagcacacgagacctggtggtcatgcggatgcgactacgcgaggggaaggagagctggagaggtcgaggggggagtcggggttggtcactcacagcttgctggccgcggcgtcgtcgttggtggcctgcacggccgccgggctgctccgcgctgcgacgctaccacctccccctcctcctcctcctcctcccgccgccaccgccgccgccgccgccgcatccattccggccggtcgatcgcgggtcacagcgtgaaggggagaggaagacgagagccgtgat
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| CDS seq | atggatgcggcggcggcggcggcggtggcggcgggaggaggaggaggaggagggggaggtggtagcgtcgcagcgcggagcagcccggcggccgtgcaggccaccaacgacgacgccgcggccagcaagctgtcatgtgttaataaaggatacatgaaggatgattatgtgcacttctttgtcagacgaacaacaaaaagggctccaataataaatcgagggtactatgcacgttggtctgttcttaggaagcttctgcatcagttcctcggtgctggaaatggcagtaatgatcaaaaccggaaacaaatattatctcttggtgctggctttgacacgacattcttccagttgcaggacgaaggcattgctccatacctttatgttgagttggatttcaaggaggtaaccagcaaaaaggctgccatcattaaccactatagtcaaatgaaggaaaagttaggaccagaagcttcgatatcaattgaaaaaggtgaagtgagaagtgcgcattacaagctcttttctgctgatattcgtgatataccaaaacttgattcagttattcagatggctgaaatggaccctaccttgccgacctttataattgcagagtgtgtgctaatttacttagacccagcttcaaccagttctattgttatttgggcatctgataagttctccactgccatctttttcttatatgagcagatccatccagatgatgcatttggagagcaaatgattataaaccttgagagtagaggatgccctctccttggtataaatgctacaccaaccctaagtcacaaggaaaatctttttcttgatcacggatggcagagagctgttgcatgggatatgctaaaaatatacaatgatttcattgacagtgaagaaagacgcaggattgaacgattggaattgtttgatgagttcgaagagtggcatatgatgcaggaacactattgtgtggcttatggaataaatgatgccaagggcctgtttgatgattttgggtttaagaaggactag
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| Protein seq | MDAAAAAAVAAGGGGGGGGGGSVAARSSPAAVQATNDDAAASKLSCVNKGYMKDDYVHFFVRRTTKRAPIINRGYYARWSVLRKLLHQFLGAGNGSNDQNRKQILSLGAGFDTTFFQLQDEGIAPYLYVELDFKEVTSKKAAIINHYSQMKEKLGPEASISIEKGEVRSAHYKLFSADIRDIPKLDSVIQMAEMDPTLPTFIIAECVLIYLDPASTSSIVIWASDKFSTAIFFLYEQIHPDDAFGEQMIINLESRGCPLLGINATPTLSHKENLFLDHGWQRAVAWDMLKIYNDFIDSEERRRIERLELFDEFEEWHMMQEHYCVAYGINDAKGLFDDFGFKKD |
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| Function | Leucine carboxyl methyltransferase 1 homolog [UniProtKB/Swiss-Prot:Q8VY08] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0002610 | OsLaMu_06g0002610.01 | Chr06 | 2029698 | 2034692 | - | NAM | ||
| CDS seq | atggatgcggcggcggcggcggcggtggcggcgggaggaggaggaggaggagggggaggtggtagcgtcgcagcgcggagcagcccggcggccgtgcaggccaccaacgacgacgccgcggccagcaagctgtcatgtgttaataaaggatacatgaaggatgattatgtgcacttctttgtcagacgaacaacaaaaagggctccaataataaatcgagggtactatgcacgttggtctgttcttaggaagcttctgcatcagttcctcggtgctggaaatggcagtaatgatcaaaaccggaaacaaatattatctcttggtgctggctttgacacgacattcttccagttgcaggacgaaggcattgctccatacctttatgttgagttggatttcaaggaggtaaccagcaaaaaggctgccatcattaaccactatagtcaaatgaaggaaaagttaggaccagaagcttcgatatcaattgaaaaaggtgaagtgagaagtgcgcattacaagctcttttctgctgatattcgtgatataccaaaacttgattcagttattcagatggctgaaatggaccctaccttgccgacctttataattgcagagtgtgtgctaatttacttagacccagcttcaaccagttctattgttatttgggcatctgataagttctccactgccatctttttcttatatgagcagatccatccagatgatgcatttggagagcaaatgattataaaccttgagagtagaggatgccctctccttggtataaatgctacaccaaccctaagtcacaaggaaaatctttttcttgatcacggatggcagagagctgttgcatgggatatgctaaaaatatacaatgatttcattgacagtgaagaaagacgcaggattgaacgattggaattgtttgatgagttcgaagagtggcatatgatgcaggaacactattgtgtggcttatggaataaatgatgccaagggcctgtttgatgattttgggtttaagaaggactag
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| Protein seq | MDAAAAAAVAAGGGGGGGGGGSVAARSSPAAVQATNDDAAASKLSCVNKGYMKDDYVHFFVRRTTKRAPIINRGYYARWSVLRKLLHQFLGAGNGSNDQNRKQILSLGAGFDTTFFQLQDEGIAPYLYVELDFKEVTSKKAAIINHYSQMKEKLGPEASISIEKGEVRSAHYKLFSADIRDIPKLDSVIQMAEMDPTLPTFIIAECVLIYLDPASTSSIVIWASDKFSTAIFFLYEQIHPDDAFGEQMIINLESRGCPLLGINATPTLSHKENLFLDHGWQRAVAWDMLKIYNDFIDSEERRRIERLELFDEFEEWHMMQEHYCVAYGINDAKGLFDDFGFKKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.089040 | 8.101968 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0140100 | RBH | 0.760471 | 0.715468 | 6.131152 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g04820 | RBH | 0.406409 | 0.399517 | 1.247257 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0140100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0002930 | RBH | 0.503383 | 15.472146 | 1.712196 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0002860 | RBH | 0.061756 | 0.579736 | 3.727174 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0002800 | RBH | 0.790917 | 10.483084 | 13.607391 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0002770 | RBH | 0.207677 | 0.645453 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002780 | RBH | 7.565340 | 10.675179 | 18.267668 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0002720 | RBH | 0.198637 | 0.877906 | 0.669037 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0034000 | RBH | 1.7467815 | 3.0741775 | 6.6899185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0002850 | RBH | 0.000000 | 0.091332 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0002720 | RBH | 0.213294 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0002740 | RBH | 1.723287 | 70.519707 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0025400 | RBH | 0.0 | 0.0 | 0.339728 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G002670 | RBH | 0.634076 | 2.501625 | 3.641392 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0002840 | RBH | 0.975987 | 19.541265 | 4.691294 |
