Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0028510 | OGI:05079100 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:29939890-29942420 | ||||||||
| Gene Symbol | SIG5, OsSIG5, OsSig5, Os Sig5 | ||||||||||
| DNA seq | atcttctcgcctgagattccgtcgacgccattgcttgcttgttgcttccattccattccattccacacacgagtgaacgagcggggaaggttctagaaggttcagttagagttttctggtctgccatggcgtccactgtgacgacgccgagccggccggtatccgccgggtgccaccggcgctcgccgcggcggtcagcgcccgtcgtgctctccctcggcggcgggccgcggcggcgcacgccgtcgtccaccagctgctcggcgctcgcgtcgcccgcgaagcagggcacggccaagctccctccgccgcagccgacggcgtcgaggaccgcggcggccgacgcggagcgggagcgggagcggacggactacaacgaggtggccgccgcgctggagagcatctacaagctgagccccgccgtggtcgaggagaaggacgccgacgaggaggacgagaagagcaaacagaccaagcggaagagaaaaggcagagtggtgagcatcctagctagtcttcttctaaatcaaatcgaaagaatggattctcgcttgctagctagatcgatcttgatcgtgcatgcgtatgggtgtcatcgaaggggaggagccggaacgcgacggtgacggtgaggagcagccggaggaggaggcggggacagaggatggacctggggaagagggtggagatgaggaggAgggaggaagaagagggcggcggcggcgccggcaaggtggaagacgaggagcgggggttcgaggagatgctgctccgggagcacgccgtgtccaccgacatgggcagcctcgactggaagcggatgaagatccctcccgtgctcacctccgcccagagcatccgcctcttcaggatcatgcagcccatgaaggtaattgccaattgccttgatgattctaactgttttagctagtttgattagttggagaaattgactaattaggatccggttgatggatcaacataTttcaggcgatcttggagatgaaggagaacctggagaacgaagtgcagagcgagccaaacgacgcacagctcgccgaggccatgaacatgtccgttcttcagatgaggcgccatctcgaggtcggccgagctgccaggaacaagctcatcaaggtactcagttactcactaaactagtgtcactactgtcacgtacgcaatcagtagagactgatcatgaataatataataatggcagcataatctccggctggtgctgtacacgatcaacaagtactacccggacatgtccaacgacgagaggttcgacgacatctgCcaggcgggcgccaacggattgatcacggcgatcgaccggttcgagcccaagcgcggcttccgcatctccacctacgccctcttctggatccgccactccatcgtccgcgccatcaccctctccaacttcacccgcttccccttcgccatggaatccgtacgtactcctccttcttcttcagctcgatctcgtcttgtccaatcttcagattggctgattgattgattgggtgcaggagaggcaggagatccacagggctcgggaggagctggcgttcgagctggggagggcgccgacggaggaggaggtgatgaagaaggtggggctgtctccggcgaggtaccgcgacgtggtgcggatgacgaggcccacctactccctccacgcgcgtaacagggtcacccaggaggagctcatcaacgaggtcaccgacgacgacgccatcggcgtcgacaccagcagccacaacaccctcctccgcctcgccatcgacgacctcgtaagttgtaaatgaacagaacaattctgttcttgaatttCctttgaaatgtgattcgaatcgaatgtatgtataaatgtgcagctggattcgctgaagcccaaggagagcgtggtgatccggcagaggttcgggctggacgggagggggaagcggacgctgagcgagatcgccggaaacctcaacatctcgagggagatggtgcgcaagtacgagctcaaggcgctcatgaagctcaagcaccccacgcgagtggaatacctgcgcagatacatgtgaaaaCcACcatgcaatcgtctcgtctctctgctgtgcataaaacgtgtagtacaatcatgtattcctagcaatcttactaattccccaaacctgcatagcattagcaaataccaacaaccacaggtattcattctactctgcatattctgctgtatataatttctgcatgatcccctctgcattgcagattacagatacaaaatacactgagatgattCcgtgttatagatacaggaacggtgtgtgtgtgtgtgtgtgtgtgtccacgagTtttttttccaagtgaggttgcggtacatatgcacctcagatgtaagtaattcttacttagcatatagatacggtgcaggggatgatccgatccctgcttagcatagctcatacgctgtgcattcAaaagaaaagacatttccttttcctatcaactgatgctgagtctgtataatactt
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| CDS seq | atggcgtccactgtgacgacgccgagccggccggtatccgccgggtgccaccggcgctcgccgcggcggtcagcgcccgtcgtgctctccctcggcggcgggccgcggcggcgcacgccgtcgtccaccagctgctcggcgctcgcgtcgcccgcgaagcagggcacggccaagctccctccgccgcagccgacggcgtcgaggaccgcggcggccgacgcggagcgggagcgggagcggacggactacaacgaggtggccgccgcgctggagagcatctacaagctgagccccgccgtggtcgaggagaaggacgccgacgaggaggacgagaagagcaaacagaccaagcggaagagaaaaggcagagtggggaggagccggaacgcgacggtgacggtgaggagcagccggaggaggaggcggggacagaggatggacctggggaagagggtggagatgaggaggAgggaggaagaagagggcggcggcggcgccggcaaggtggaagacgaggagcgggggttcgaggagatgctgctccgggagcacgccgtgtccaccgacatgggcagcctcgactggaagcggatgaagatccctcccgtgctcacctccgcccagagcatccgcctcttcaggatcatgcagcccatgaaggcgatcttggagatgaaggagaacctggagaacgaagtgcagagcgagccaaacgacgcacagctcgccgaggccatgaacatgtccgttcttcagatgaggcgccatctcgaggtcggccgagctgccaggaacaagctcatcaagcataatctccggctggtgctgtacacgatcaacaagtactacccggacatgtccaacgacgagaggttcgacgacatctgCcaggcgggcgccaacggattgatcacggcgatcgaccggttcgagcccaagcgcggcttccgcatctccacctacgccctcttctggatccgccactccatcgtccgcgccatcaccctctccaacttcacccgcttccccttcgccatggaatccgagaggcaggagatccacagggctcgggaggagctggcgttcgagctggggagggcgccgacggaggaggaggtgatgaagaaggtggggctgtctccggcgaggtaccgcgacgtggtgcggatgacgaggcccacctactccctccacgcgcgtaacagggtcacccaggaggagctcatcaacgaggtcaccgacgacgacgccatcggcgtcgacaccagcagccacaacaccctcctccgcctcgccatcgacgacctcctggattcgctgaagcccaaggagagcgtggtgatccggcagaggttcgggctggacgggagggggaagcggacgctgagcgagatcgccggaaacctcaacatctcgagggagatggtgcgcaagtacgagctcaaggcgctcatgaagctcaagcaccccacgcgagtggaatacctgcgcagatacatgtga
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| Protein seq | MASTVTTPSRPVSAGCHRRSPRRSAPVVLSLGGGPRRRTPSSTSCSALASPAKQGTAKLPPPQPTASRTAAADAERERERTDYNEVAAALESIYKLSPAVVEEKDADEEDEKSKQTKRKRKGRVGRSRNATVTVRSSRRRRRGQRMDLGKRVEMRRREEEEGGGGAGKVEDEERGFEEMLLREHAVSTDMGSLDWKRMKIPPVLTSAQSIRLFRIMQPMKAILEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM |
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| Function | RNA polymerase sigma factor sigE, chloroplastic/mitochondrial [UniProtKB/Swiss-Prot:Q9ZNX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0028510 | OsLaMu_05g0028510.01 | Chr05 | 29939890 | 29942420 | + | NAM | ||
| CDS seq | atggcgtccactgtgacgacgccgagccggccggtatccgccgggtgccaccggcgctcgccgcggcggtcagcgcccgtcgtgctctccctcggcggcgggccgcggcggcgcacgccgtcgtccaccagctgctcggcgctcgcgtcgcccgcgaagcagggcacggccaagctccctccgccgcagccgacggcgtcgaggaccgcggcggccgacgcggagcgggagcgggagcggacggactacaacgaggtggccgccgcgctggagagcatctacaagctgagccccgccgtggtcgaggagaaggacgccgacgaggaggacgagaagagcaaacagaccaagcggaagagaaaaggcagagtggggaggagccggaacgcgacggtgacggtgaggagcagccggaggaggaggcggggacagaggatggacctggggaagagggtggagatgaggaggAgggaggaagaagagggcggcggcggcgccggcaaggtggaagacgaggagcgggggttcgaggagatgctgctccgggagcacgccgtgtccaccgacatgggcagcctcgactggaagcggatgaagatccctcccgtgctcacctccgcccagagcatccgcctcttcaggatcatgcagcccatgaaggcgatcttggagatgaaggagaacctggagaacgaagtgcagagcgagccaaacgacgcacagctcgccgaggccatgaacatgtccgttcttcagatgaggcgccatctcgaggtcggccgagctgccaggaacaagctcatcaagcataatctccggctggtgctgtacacgatcaacaagtactacccggacatgtccaacgacgagaggttcgacgacatctgCcaggcgggcgccaacggattgatcacggcgatcgaccggttcgagcccaagcgcggcttccgcatctccacctacgccctcttctggatccgccactccatcgtccgcgccatcaccctctccaacttcacccgcttccccttcgccatggaatccgagaggcaggagatccacagggctcgggaggagctggcgttcgagctggggagggcgccgacggaggaggaggtgatgaagaaggtggggctgtctccggcgaggtaccgcgacgtggtgcggatgacgaggcccacctactccctccacgcgcgtaacagggtcacccaggaggagctcatcaacgaggtcaccgacgacgacgccatcggcgtcgacaccagcagccacaacaccctcctccgcctcgccatcgacgacctcctggattcgctgaagcccaaggagagcgtggtgatccggcagaggttcgggctggacgggagggggaagcggacgctgagcgagatcgccggaaacctcaacatctcgagggagatggtgcgcaagtacgagctcaaggcgctcatgaagctcaagcaccccacgcgagtggaatacctgcgcagatacatgtga
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| Protein seq | MASTVTTPSRPVSAGCHRRSPRRSAPVVLSLGGGPRRRTPSSTSCSALASPAKQGTAKLPPPQPTASRTAAADAERERERTDYNEVAAALESIYKLSPAVVEEKDADEEDEKSKQTKRKRKGRVGRSRNATVTVRSSRRRRRGQRMDLGKRVEMRRREEEEGGGGAGKVEDEERGFEEMLLREHAVSTDMGSLDWKRMKIPPVLTSAQSIRLFRIMQPMKAILEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0028510 | OsLaMu_05g0028510.02 | Chr05 | 29939890 | 29942420 | + | NAM | ||
| CDS seq | atggcgtccactgtgacgacgccgagccggccggtatccgccgggtgccaccggcgctcgccgcggcggtcagcgcccgtcgtgctctccctcggcggcgggccgcggcggcgcacgccgtcgtccaccagctgctcggcgctcgcgtcgcccgcgaagcagggcacggccaagctccctccgccgcagccgacggcgtcgaggaccgcggcggccgacgcggagcgggagcgggagcggacggactacaacgaggtggccgccgcgctggagagcatctacaagctgagccccgccgtggtcgaggagaaggacgccgacgaggaggacgagaagagcaaacagaccaagcggaagagaaaaggcagagtggggaggagccggaacgcgacggtgacggtgaggagcagccggaggaggaggcggggacagaggatggacctggggaagaggcccaagcgcggcttccgcatctccacctacgccctcttctggatccgccactccatcgtccgcgccatcaccctctccaacttcacccgcttccccttcgccatggaatccgagaggcaggagatccacagggctcgggaggagctggcgttcgagctggggagggcgccgacggaggaggaggtgatgaagaaggtggggctgtctccggcgaggtaccgcgacgtggtgcggatgacgaggcccacctactccctccacgcgcgtaacagggtcacccaggaggagctcatcaacgaggtcaccgacgacgacgccatcggcgtcgacaccagcagccacaacaccctcctccgcctcgccatcgacgacctcctggattcgctgaagcccaaggagagcgtggtgatccggcagaggttcgggctggacgggagggggaagcggacgctgagcgagatcgccggaaacctcaacatctcgagggagatggtgcgcaagtacgagctcaaggcgctcatgaagctcaagcaccccacgcgagtggaatacctgcgcagatacatgtga
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| Protein seq | MASTVTTPSRPVSAGCHRRSPRRSAPVVLSLGGGPRRRTPSSTSCSALASPAKQGTAKLPPPQPTASRTAAADAERERERTDYNEVAAALESIYKLSPAVVEEKDADEEDEKSKQTKRKRKGRVGRSRNATVTVRSSRRRRRGQRMDLGKRPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEYLRRYM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.227269 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0586600 | RBH | 4.896674 | 4.694602 | 7.501997 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50930 | RBH | 2.458444 | 2.391408 | 1.419953 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0586600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028740 | RBH | 0.0 | 0.000000 | 1.752573 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028530 | RBH | 1.750166 | 0.924532 | 2.290812 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028530 | RBH | 0.578234 | 1.081215 | 3.210948 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028590 | RBH | 0.000000 | 0.056086 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028480 | RBH | 23.673864 | 4.211096 | 13.787416 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0456900 | SBH | 2.1887915 | 1.215979 | 1.056322 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028170 | RBH | 0.193268 | 0.154377 | 2.157724 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0469900 | RBH | 32.596803 | 2.553125 | 0.0258805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028330 | RBH | 1.907427 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0028230 | RBH | 1.083947 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028480 | RBH | 15.029009 | 6.004348 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028460 | RBH | 0.000000 | 0.000000 | 5.425489 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028020 | RBH | 0.178769 | 0.0 | 1.531028 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028540 | RBH | 1.133676 | 0.0 | 10.713910 |
