Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0024810 | OGI:05072080 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:27409060-27411133 | ||||||||
| Gene Symbol | OsFbox270, Os_F0454 | ||||||||||
| DNA seq | cagcaattagtaagacaaatttcaaattattacacattacagaaaacaaataagaaccgagttcacacttcacacactgctgaacacgaggttcagcaaatacattattcgagtaaaagagattacaaattaaatttttcaccgggccacttactctaaataaaattaagtgaacatgataaattattgctgccatcggttggcctaatggctaatgctgattataactactacatgggtgaatcaacctagaactatttggagatggtccgttgagcaagagaccgcatccatgatctgcttctccatggtttctttctccttgtcattccacgaattctcctgcaacctcggcatctcccagtcccaatttcccttgtacttcagatcccctcccttgaaaatggagacatggcgcagcgcggtgcacgctccgacgacgagcttcacaaagtatacctgactcattgtccctccaaagccagccatggcgaactcctccaagcgatagttgtgcagaggaacggtgggatgatgccatgagaactcgccgccggtgggcttcttcgcgtcgcgcggggcgatgtgaatgtgaagggtcttgagcgaaggcgccgcgtcgaggaggatgctaggccacgacgcgtcccaggaggaaggcatgtcggcgaccagcagccgcctcaagctgcgcagcaacggcggcgacggcgagcaagacgacggcacgatccatctctccggtccggtgaaccggacgatcaggtcggtgatgtccagggtgtagtggaagaatctgtcgagcgtcaggtcgggttcgagccaacggctgaacttgcgggccaagccgtagaggtaggcgaggtgccattgccggaggcaggggaaggaggaggaggaggtgcggcggtcgaacagcacctgggtgcccatggaggctaggttctggagtctcggaagagaccgcagcttcaccgaaatgatatcgcaggcatcgacgacgagctccctgatctccgacatgggagcgtccaccaccaaggacttcctccggtcgaggaagcatgattcgaggtgcagcacttgcagctgcgggcacgaggtgaagacgccctcgtaggcttccgccggcgtcgaggccgccatgccgtgcaagacgagcttggtgacgccgccgtactcgtgcagcggcgggagcacgcagccgccgagcgtgagggttcgcaggcgtgacgcgcggggatccttgcagaggccatggctagggaattcgtgggtgggaggttggcgccagtacattggcttcccgacggcctcgagctcctcgacgccccaatcgtctatggccttggagatcaatcggttgatgccagcggtgttgtgcgtgccgaagaactcgagcctcagcctactgaccttccgccggctaggtcggccgtcgtcggcgtcgatgaagctctcgacggagcggaccaaggcgcgcgcggctcgccgctcgtgcctccggatggcgggcatcaggctattggggatggcgtgccggtacgctatccagttcatcacgccgcggtggcggaggatgcaccggtggtagcgcggcgggagtatgtcgctgaccctgaaatcgagggcgtcgagctcgtggggcagattcgcccagcgcctggagagcatgccggtggcgagcgccgcgcgggtgtcgaggcggcggaggacgaggaggagcaggtcgtcggggagtgcgctgaggcggtcgtcgccgcaggcctcccgcggccgccggcctctcggtctcaagctcatcctggccatggtagatctacctcctattgctggggggatcaagcaaccagtagagatggccttgcggctgcggtggcgattaaatagaggcgtccgcatcgacctcctcgggttcggattcacgatgcccgccgccggaggaatttgagtcggattggcaaaggaattaaaaggctagggaaatttgtgaatcaggaaacttcaatcctatcgccggcgagcataggattggggaattggtcgttgggttttcaggcggtataattaaaag
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| CDS seq | atgcggacgcctctatttaatcgccaccgcagccgcaaggccatctctactggttgcttgatccccccagcaataggaggtagatctaccatggccaggatgagcttgagaccgagaggccggcggccgcgggaggcctgcggcgacgaccgcctcagcgcactccccgacgacctgctcctcctcgtcctccgccgcctcgacacccgcgcggcgctcgccaccggcatgctctccaggcgctgggcgaatctgccccacgagctcgacgccctcgatttcagggtcagcgacatactcccgccgcgctaccaccggtgcatcctccgccaccgcggcgtgatgaactggatagcgtaccggcacgccatccccaatagcctgatgcccgccatccggaggcacgagcggcgagccgcgcgcgccttggtccgctccgtcgagagcttcatcgacgccgacgacggccgacctagccggcggaaggtcagtaggctgaggctcgagttcttcggcacgcacaacaccgctggcatcaaccgattgatctccaaggccatagacgattggggcgtcgaggagctcgaggccgtcgggaagccaatgtactggcgccaacctcccacccacgaattccctagccatggcctctgcaaggatccccgcgcgtcacgcctgcgaaccctcacgctcggcggctgcgtgctcccgccgctgcacgagtacggcggcgtcaccaagctcgtcttgcacggcatggcggcctcgacgccggcggaagcctacgagggcgtcttcacctcgtgcccgcagctgcaagtgctgcacctcgaatcatgcttcctcgaccggaggaagtccttggtggtggacgctcccatgtcggagatcagggagctcgtcgtcgatgcctgcgatatcatttcggtgaagctgcggtctcttccgagactccagaacctagcctccatgggcacccaggtgctgttcgaccgccgcacctcctcctcctccttcccctgcctccggcaatggcacctcgcctacctctacggcttggcccgcaagttcagccgttggctcgaacccgacctgacgctcgacagattcttccactacaccctggacatcaccgacctgatcgtccggttcaccggaccggagagatggatcgtgccgtcgtcttgctcgccgtcgccgccgttgctgcgcagcttgaggcggctgctggtcgccgacatgccttcctcctgggacgcgtcgtggcctagcatcctcctcgacgcggcgccttcgctcaagacccttcacattcacatcgccccgcgcgacgcgaagaagcccaccggcggcgagttctcatggcatcatcccaccgttcctctgcacaactatcgcttggaggagttcgccatggctggctttggagggacaatgagtcaggtatactttgtgaagctcgtcgtcggagcgtgcaccgcgctgcgccatgtctccattttcaagggaggggatctgaagtacaagggaaattgggactgggagatgccgaggttgcaggagaattcgtggaatgacaaggagaaagaaaccatggagaagcagatcatggatgcggtctcttgctcaacggaccatctccaaatagttctaggttga
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| Protein seq | MRTPLFNRHRSRKAISTGCLIPPAIGGRSTMARMSLRPRGRRPREACGDDRLSALPDDLLLLVLRRLDTRAALATGMLSRRWANLPHELDALDFRVSDILPPRYHRCILRHRGVMNWIAYRHAIPNSLMPAIRRHERRAARALVRSVESFIDADDGRPSRRKVSRLRLEFFGTHNTAGINRLISKAIDDWGVEELEAVGKPMYWRQPPTHEFPSHGLCKDPRASRLRTLTLGGCVLPPLHEYGGVTKLVLHGMAASTPAEAYEGVFTSCPQLQVLHLESCFLDRRKSLVVDAPMSEIRELVVDACDIISVKLRSLPRLQNLASMGTQVLFDRRTSSSSFPCLRQWHLAYLYGLARKFSRWLEPDLTLDRFFHYTLDITDLIVRFTGPERWIVPSSCSPSPPLLRSLRRLLVADMPSSWDASWPSILLDAAPSLKTLHIHIAPRDAKKPTGGEFSWHHPTVPLHNYRLEEFAMAGFGGTMSQVYFVKLVVGACTALRHVSIFKGGDLKYKGNWDWEMPRLQENSWNDKEKETMEKQIMDAVSCSTDHLQIVLG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0024810 | OsLaMu_05g0024810.01 | Chr05 | 27409060 | 27411133 | - | NAM | ||
| CDS seq | atgcggacgcctctatttaatcgccaccgcagccgcaaggccatctctactggttgcttgatccccccagcaataggaggtagatctaccatggccaggatgagcttgagaccgagaggccggcggccgcgggaggcctgcggcgacgaccgcctcagcgcactccccgacgacctgctcctcctcgtcctccgccgcctcgacacccgcgcggcgctcgccaccggcatgctctccaggcgctgggcgaatctgccccacgagctcgacgccctcgatttcagggtcagcgacatactcccgccgcgctaccaccggtgcatcctccgccaccgcggcgtgatgaactggatagcgtaccggcacgccatccccaatagcctgatgcccgccatccggaggcacgagcggcgagccgcgcgcgccttggtccgctccgtcgagagcttcatcgacgccgacgacggccgacctagccggcggaaggtcagtaggctgaggctcgagttcttcggcacgcacaacaccgctggcatcaaccgattgatctccaaggccatagacgattggggcgtcgaggagctcgaggccgtcgggaagccaatgtactggcgccaacctcccacccacgaattccctagccatggcctctgcaaggatccccgcgcgtcacgcctgcgaaccctcacgctcggcggctgcgtgctcccgccgctgcacgagtacggcggcgtcaccaagctcgtcttgcacggcatggcggcctcgacgccggcggaagcctacgagggcgtcttcacctcgtgcccgcagctgcaagtgctgcacctcgaatcatgcttcctcgaccggaggaagtccttggtggtggacgctcccatgtcggagatcagggagctcgtcgtcgatgcctgcgatatcatttcggtgaagctgcggtctcttccgagactccagaacctagcctccatgggcacccaggtgctgttcgaccgccgcacctcctcctcctccttcccctgcctccggcaatggcacctcgcctacctctacggcttggcccgcaagttcagccgttggctcgaacccgacctgacgctcgacagattcttccactacaccctggacatcaccgacctgatcgtccggttcaccggaccggagagatggatcgtgccgtcgtcttgctcgccgtcgccgccgttgctgcgcagcttgaggcggctgctggtcgccgacatgccttcctcctgggacgcgtcgtggcctagcatcctcctcgacgcggcgccttcgctcaagacccttcacattcacatcgccccgcgcgacgcgaagaagcccaccggcggcgagttctcatggcatcatcccaccgttcctctgcacaactatcgcttggaggagttcgccatggctggctttggagggacaatgagtcaggtatactttgtgaagctcgtcgtcggagcgtgcaccgcgctgcgccatgtctccattttcaagggaggggatctgaagtacaagggaaattgggactgggagatgccgaggttgcaggagaattcgtggaatgacaaggagaaagaaaccatggagaagcagatcatggatgcggtctcttgctcaacggaccatctccaaatagttctaggttga
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| Protein seq | MRTPLFNRHRSRKAISTGCLIPPAIGGRSTMARMSLRPRGRRPREACGDDRLSALPDDLLLLVLRRLDTRAALATGMLSRRWANLPHELDALDFRVSDILPPRYHRCILRHRGVMNWIAYRHAIPNSLMPAIRRHERRAARALVRSVESFIDADDGRPSRRKVSRLRLEFFGTHNTAGINRLISKAIDDWGVEELEAVGKPMYWRQPPTHEFPSHGLCKDPRASRLRTLTLGGCVLPPLHEYGGVTKLVLHGMAASTPAEAYEGVFTSCPQLQVLHLESCFLDRRKSLVVDAPMSEIRELVVDACDIISVKLRSLPRLQNLASMGTQVLFDRRTSSSSFPCLRQWHLAYLYGLARKFSRWLEPDLTLDRFFHYTLDITDLIVRFTGPERWIVPSSCSPSPPLLRSLRRLLVADMPSSWDASWPSILLDAAPSLKTLHIHIAPRDAKKPTGGEFSWHHPTVPLHNYRLEEFAMAGFGGTMSQVYFVKLVVGACTALRHVSIFKGGDLKYKGNWDWEMPRLQENSWNDKEKETMEKQIMDAVSCSTDHLQIVLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.113854 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0536800 | RBH | 1.040693 | 1.464109 | 0.953184 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45990 | RBH | 0.628104 | 0.878860 | 0.218987 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0536800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025050 | RBH | 0.091598 | 1.261061 | 0.749285 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024840 | RBH | 0.123677 | 0.518517 | 0.769145 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024850 | RBH | 0.404774 | 0.0 | 0.621561 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024880 | RBH | 0.136010 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024880 | RBH | 2.776083 | 0.0 | 1.090413 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0414100 | RBH | 1.2697245 | 2.0157385 | 1.549603 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024510 | RBH | 0.0 | 0.0 | 0.118848 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0425400 | RBH | 0.7602425 | 1.678125 | 0.815466 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024700 | RBH | 0.159645 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024570 | RBH | 0.087073 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024770 | RBH | 3.294685 | 3.044471 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024770 | RBH | 0.133017 | 0.0 | 0.332993 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025060 | SBH | 0.000000 | 3.053540 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024260 | RBH | 0.131406 | 0.424967 | 0.339088 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024710 | RBH | 0.434979 | 1.906928 | 1.456874 |
