Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0023240 | OGI:05068940 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:26281664-26283946 | ||||||||
| Gene Symbol | PK4, OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19, OsSnRK3.20, SnRK3.20 | ||||||||||
| DNA seq | acgatccgttaagctgttccccctcccttccaacgccggccactcgtctcctcctcctcccacctcccgtttcctccgcgccatcctcctccgcctcggcgccatggccgcgaccccgccgtcgtcgcgggacccgtcgccgcagcaccggcggccgctgtcctcctccgcctccctcgctggcaagccgcgggggggcgggctcctgctcgggcggtacgagctcggccgcctcctcggccacggcaccttcgccaaggtgtaccaggcgcggagcgcggattccggggagccggtcgcgatcaaggtgctcgacaaggagaaggcgatgcggcacggcctcgtcccgcacatcaagcgggagatcgccatcctccgccgcgtccgccaccccaacatcgtgaggctgttcgaggtgatggccaccaagtccaagatctacttcgtgatggagctcgtccgcggcggggagctgttcggccgcgtcgccaaggggcggctcaaggaggacaccgcgcggcgctacttccagcagctcgtctccgccgtcgggttctgccacgcgcgcggcgtgttccaccgcgacctcaagcccgagaacctcctcgtcgacgagcacggcgacctcaaggtctccgacttcggcctctccgccgtcgccgaccagttccaccccgacggcctcctccacaccttctgcggcacgccctcctacgtcgcgcccgaggtgctcgcgcgccgcggctacgacggcgccaaggcggacatatggtcctgcggcatcatcctcttcgtgctcatggctggctaccttccgttccatgaccagaatctcatggccatgtaccgaaagatttacaGgggggaattccggtgcccgagatggttctccaaggatctttccagtctactgaatcgcatccttgacacgaacccagagacaaggatcactgtcaaagaggtcatggagagcaggtggttccagaagggattccggccggtcagattctatgttgaggatgatcaggttcacagcttggcagatggtgataatgatatgccggagttggaacctagtgagcctcctcctcctcctccgtttccgccgccgccgcagcagcaagatgatgacggtgaggagtcgggatgggagtcggactcatccgtggcatcatgtcctgccacattgtcatctgaggagcgtcggcaaagacctctcgggtctctcacacggccagcaagtcttaatgcgttcgatatcatatcgttctcaaagggatttgatttgtcggggttgtttgaggagcgagggagtgaagtgaggttcatatcggcagagcctatgcaaacaatcatcacaaaattggaggagatcgcaaaggtgaagagcttcttcgttcggcgaaaagactggcgagtgagcatagaaggcacgagggaaggtttgaagggtccattgacaatcagcgctgagatatttgagctcacaccaagcctggtggtagtggaggtgaagaagaaggcaggggataaggaagaatatgatgacttctgtaacagggagttgaaacctgggatgcagcatctcgtacaccatatgggatcagttccaaatataccttctgatacggagtagtttgaactaagaaaggtagttctctttcttggaggggtataaggaaattttggattaaaagtatatgtctatgcaagcatgaacacctgagaggcaaaatgatacccaattcctttagaccagtgtccatgttttggtgctgttcgtttcttcaatcgaaatgatgtatgctagtgtttgcatgctaatatcagctatcaaatgtctgtttttagctgttacagtttaaagagagtgacaaatctgagtatatggcatcagtatcaatgaagtggactagacttttatgtatgccgcagcagtgcagccatttgtatttctatgctgccagttagttctctgaatacatatgacatcaacactgaagaaattagctcgaagtgctctaaagaagttctgttttgggattAaaattgtaaatatagggtgaatgaataaattagacaaagcgttagcattctaagtatctagttgtttattacttctgtgcatcaatttgaatgcacacttctgtataccattgttgtgctaccttttgtttaagtaactcaaatactgtatactggtgttgtggAaacatcgttaaacaaacaactgatagtttacaatgctcatctatggaattcttcattgtaattttgcgacat
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| CDS seq | atggccgcgaccccgccgtcgtcgcgggacccgtcgccgcagcaccggcggccgctgtcctcctccgcctccctcgctggcaagccgcgggggggcgggctcctgctcgggcggtacgagctcggccgcctcctcggccacggcaccttcgccaaggtgtaccaggcgcggagcgcggattccggggagccggtcgcgatcaaggtgctcgacaaggagaaggcgatgcggcacggcctcgtcccgcacatcaagcgggagatcgccatcctccgccgcgtccgccaccccaacatcgtgaggctgttcgaggtgatggccaccaagtccaagatctacttcgtgatggagctcgtccgcggcggggagctgttcggccgcgtcgccaaggggcggctcaaggaggacaccgcgcggcgctacttccagcagctcgtctccgccgtcgggttctgccacgcgcgcggcgtgttccaccgcgacctcaagcccgagaacctcctcgtcgacgagcacggcgacctcaaggtctccgacttcggcctctccgccgtcgccgaccagttccaccccgacggcctcctccacaccttctgcggcacgccctcctacgtcgcgcccgaggtgctcgcgcgccgcggctacgacggcgccaaggcggacatatggtcctgcggcatcatcctcttcgtgctcatggctggctaccttccgttccatgaccagaatctcatggccatgtaccgaaagatttacaGgggggaattccggtgcccgagatggttctccaaggatctttccagtctactgaatcgcatccttgacacgaacccagagacaaggatcactgtcaaagaggtcatggagagcaggtggttccagaagggattccggccggtcagattctatgttgaggatgatcaggttcacagcttggcagatggtgataatgatatgccggagttggaacctagtgagcctcctcctcctcctccgtttccgccgccgccgcagcagcaagatgatgacggtgaggagtcgggatgggagtcggactcatccgtggcatcatgtcctgccacattgtcatctgaggagcgtcggcaaagacctctcgggtctctcacacggccagcaagtcttaatgcgttcgatatcatatcgttctcaaagggatttgatttgtcggggttgtttgaggagcgagggagtgaagtgaggttcatatcggcagagcctatgcaaacaatcatcacaaaattggaggagatcgcaaaggtgaagagcttcttcgttcggcgaaaagactggcgagtgagcatagaaggcacgagggaaggtttgaagggtccattgacaatcagcgctgagatatttgagctcacaccaagcctggtggtagtggaggtgaagaagaaggcaggggataaggaagaatatgatgacttctgtaacagggagttgaaacctgggatgcagcatctcgtacaccatatgggatcagttccaaatataccttctgatacggagtag
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| Protein seq | MAATPPSSRDPSPQHRRPLSSSASLAGKPRGGGLLLGRYELGRLLGHGTFAKVYQARSADSGEPVAIKVLDKEKAMRHGLVPHIKREIAILRRVRHPNIVRLFEVMATKSKIYFVMELVRGGELFGRVAKGRLKEDTARRYFQQLVSAVGFCHARGVFHRDLKPENLLVDEHGDLKVSDFGLSAVADQFHPDGLLHTFCGTPSYVAPEVLARRGYDGAKADIWSCGIILFVLMAGYLPFHDQNLMAMYRKIYRGEFRCPRWFSKDLSSLLNRILDTNPETRITVKEVMESRWFQKGFRPVRFYVEDDQVHSLADGDNDMPELEPSEPPPPPPFPPPPQQQDDDGEESGWESDSSVASCPATLSSEERRQRPLGSLTRPASLNAFDIISFSKGFDLSGLFEERGSEVRFISAEPMQTIITKLEEIAKVKSFFVRRKDWRVSIEGTREGLKGPLTISAEIFELTPSLVVVEVKKKAGDKEEYDDFCNRELKPGMQHLVHHMGSVPNIPSDTE |
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| Function | CBL-interacting protein kinase 19 [UniProtKB/Swiss-Prot:Q68Y49] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0023240 | OsLaMu_05g0023240.01 | Chr05 | 26281664 | 26283946 | + | NAM | ||
| CDS seq | atggccgcgaccccgccgtcgtcgcgggacccgtcgccgcagcaccggcggccgctgtcctcctccgcctccctcgctggcaagccgcgggggggcgggctcctgctcgggcggtacgagctcggccgcctcctcggccacggcaccttcgccaaggtgtaccaggcgcggagcgcggattccggggagccggtcgcgatcaaggtgctcgacaaggagaaggcgatgcggcacggcctcgtcccgcacatcaagcgggagatcgccatcctccgccgcgtccgccaccccaacatcgtgaggctgttcgaggtgatggccaccaagtccaagatctacttcgtgatggagctcgtccgcggcggggagctgttcggccgcgtcgccaaggggcggctcaaggaggacaccgcgcggcgctacttccagcagctcgtctccgccgtcgggttctgccacgcgcgcggcgtgttccaccgcgacctcaagcccgagaacctcctcgtcgacgagcacggcgacctcaaggtctccgacttcggcctctccgccgtcgccgaccagttccaccccgacggcctcctccacaccttctgcggcacgccctcctacgtcgcgcccgaggtgctcgcgcgccgcggctacgacggcgccaaggcggacatatggtcctgcggcatcatcctcttcgtgctcatggctggctaccttccgttccatgaccagaatctcatggccatgtaccgaaagatttacaGgggggaattccggtgcccgagatggttctccaaggatctttccagtctactgaatcgcatccttgacacgaacccagagacaaggatcactgtcaaagaggtcatggagagcaggtggttccagaagggattccggccggtcagattctatgttgaggatgatcaggttcacagcttggcagatggtgataatgatatgccggagttggaacctagtgagcctcctcctcctcctccgtttccgccgccgccgcagcagcaagatgatgacggtgaggagtcgggatgggagtcggactcatccgtggcatcatgtcctgccacattgtcatctgaggagcgtcggcaaagacctctcgggtctctcacacggccagcaagtcttaatgcgttcgatatcatatcgttctcaaagggatttgatttgtcggggttgtttgaggagcgagggagtgaagtgaggttcatatcggcagagcctatgcaaacaatcatcacaaaattggaggagatcgcaaaggtgaagagcttcttcgttcggcgaaaagactggcgagtgagcatagaaggcacgagggaaggtttgaagggtccattgacaatcagcgctgagatatttgagctcacaccaagcctggtggtagtggaggtgaagaagaaggcaggggataaggaagaatatgatgacttctgtaacagggagttgaaacctgggatgcagcatctcgtacaccatatgggatcagttccaaatataccttctgatacggagtag
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| Protein seq | MAATPPSSRDPSPQHRRPLSSSASLAGKPRGGGLLLGRYELGRLLGHGTFAKVYQARSADSGEPVAIKVLDKEKAMRHGLVPHIKREIAILRRVRHPNIVRLFEVMATKSKIYFVMELVRGGELFGRVAKGRLKEDTARRYFQQLVSAVGFCHARGVFHRDLKPENLLVDEHGDLKVSDFGLSAVADQFHPDGLLHTFCGTPSYVAPEVLARRGYDGAKADIWSCGIILFVLMAGYLPFHDQNLMAMYRKIYRGEFRCPRWFSKDLSSLLNRILDTNPETRITVKEVMESRWFQKGFRPVRFYVEDDQVHSLADGDNDMPELEPSEPPPPPPFPPPPQQQDDDGEESGWESDSSVASCPATLSSEERRQRPLGSLTRPASLNAFDIISFSKGFDLSGLFEERGSEVRFISAEPMQTIITKLEEIAKVKSFFVRRKDWRVSIEGTREGLKGPLTISAEIFELTPSLVVVEVKKKAGDKEEYDDFCNRELKPGMQHLVHHMGSVPNIPSDTE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.647529 | 10.297448 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0514200 | RBH | 7.592860 | 7.639027 | 5.601845 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43840 | RBH | 4.487985 | 4.501079 | 1.312130 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0514200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023440 | RBH | 1.560975 | 4.636280 | 5.981916 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023360 | RBH | 1.009258 | 2.354217 | 2.527287 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023320 | RBH | 4.646768 | 14.779338 | 11.319209 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023290 | RBH | 0.717098 | 0.370799 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023380 | RBH | 22.638409 | 21.342970 | 13.468639 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0394900 | RBH | 14.0274135 | 21.1520735 | 46.5129035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022970 | RBH | 0.548602 | 1.555683 | 3.054427 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0404800 | RBH | 14.617905 | 19.7296545 | 11.113294 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023140 | RBH | 0.989105 | 0.143432 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023040 | RBH | 2.266787 | 8.013413 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023210 | RBH | 9.382728 | 5.617651 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023230 | RBH | 2.343014 | 1.979855 | 5.130636 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033480 | RBH | 0.000000 | 0.459782 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022670 | RBH | 0.277862 | 9.836223 | 1.413408 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023060 | RBH | 1.463504 | 28.023397 | 7.025626 |
