Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0018130 | OGI:05056960 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:21896635-21901446 | ||||||||
| Gene Symbol | WSL8, OsWSL8, OsdNK1, dNK1 | ||||||||||
| DNA seq | cgactcgcaaggggataacaccaaaaccctcccccctccaaaccctagtcccccattgatgacctccgccgccaccgccgtagatgcacaggctctccttcctccaggccaccatcattgacgcgccgctgctcctctcctccgcctccatggccaccgtgccggcgctgcggctcggctcccccgccgcgctcctcgccgcgcgccgcccgccgcggtggctgcggtgcggcggcggcggtgtcgggggagggggagggggagtgggagtggcgcggagggggatggcgtgctccgtggaggccttggcgaggcgcggtgggggcggcgagtcggagtcggagaatgaggaggaggaggagaagcggaggggcagggcgggggagaggaggctcagaggcggcgggagcgccgcggcggcggcggcggcggcggggagcggggagctcctctccatccccggcgtggggcctcgcaaccagaggaagctcgtggacaacggattcgagggcgtcgcgcagcttaagcagctctatcgggataaggtgcgtgctctgcgtgtattttgtactgcattgatctgttctatagccaactggaacagtggaatcgctgtattgtttggttattctgcataaaaaccacacgactgtaatgcagtaagtctagcatttgagtttgtgtgcacaaacactgaatgaacttaataaactcgtccaacagtatgatttttgattaaagatcaacttctcaaagagcacactcatcactatgcatacctctgatgaagatactactgctttagcccagatcctccaatgcaagatcgatagtttcccaatgccatatcttggattgcctcttaccccatctaaggtgagaagatgtgaactccagccgatgatatcttgtgcggataaatacctctcatgctggcaagcccgccttctcacatatgcagaaagattgatcttggttaacacagttcttgatgctgttccggtatatgccatgtctgcacttatgctcccgaaaggggtgttattgaagatcttaacaagaaaaggcgcgcattcctttggactggggaagacacctgcggtggtgcgagatgccttgtcgcatgggacacagtctgtcctccaaagcaagcgggagggctgggagtcaagaatattggcaaacaaaatgaggctttattagtgaaacaacttcatcatctacactcagtttgctCcccctgggcatcatggatctgggaagagcattcaaattctgcccttgtggatcatctgcctttgggcccccattgggactctttgatgaccctgctccctctccttcagacacgcacctcggtggttgttggagatggaagtcgcacctccttctggcatgatcgctggtgtggatattataccctctccgacaaaatgcagccactatacacgcactccttggtgaaaaatgcttctgttcgtcaggttctatcctccgacatccggcagcactttgctcctcgcctctcatcagttgcagaagaacaatacctcagtcatgtcaaactatctcgggatgggatgtgaacgtcggccagccagatgagagatatgctcatggatcaagtggtctcctcacaactaagcgcctgtatctcgctgagtttgattcacagcctccctgtcccaattggaaatttgtctgggaaaacaaggcccccctgaagatccaattctttgcatggctactggttagggatcgcctccctactaagaagaatctacacaaaaaaactattgtgctgtctccagagtgtgatctctgccaccttactgaagaaacggcctcacatctatgccttcactgccctgtttccctgcagttttgggcgagccttgggatcactcttaacatcctatctattgccagcgtctcaactctcacccccccatcatctatcccaactaaacactttcgggttttctatcttctatgtttctggaatttatggattcatcgacatgatgtggtctttagaagagaagaaatttcgctccgttggttgctcacgaaatgcattgatgatgcttccctgtgggctgaaagaattaaaatagatgatcgacatgtaatctcctcttggaaatcccttttctcaacttgtattcgctccttaattgtgtaactgaacactgcactccttccccctttatttcttctttaatatattcaggtggggaaactctcccccctggtgaattttcaaaaaaaaaaaaaacagtatgcaTttttttttaccatttatattgacagctcctgtagtatgcttgtcatatttataataagttcaTtttttatatataccgcaaaaaaaaaagaatcctatgctgtgcctgtttactgtttcaaagctttagttgaccatcatagtagaagattaaactaactgatgcagtgttagaaagggacttgtatatacggagtactggcttgtttctctaaagcaaatgtgaaacataaaggcagctggaaaggaatgtgtcttgaaagcatttatgatctgatgtaTttttttaaaaaaggtagcccatgatatccaatttggtcttattttcctgtagcccattcatgaatcgcctatgcggctatgctatgcatgatgccacgagtccacgatgctcattcagtctatgacagttttctccaattatgatattgccagtcgatctacgtctctgtatattaagtctgtgttagatgctgtgacaccggagattcattttttcttgttttgggtttagttgcagaacactataactattgattgatggtacaagtatccaatcgaagtttgtagtatattttcctgaccatttttttcctggtgcatgtgcagttctttggaaaatatagcgagaagatggttgagtttttacagagctcggttggcatcattcataagaaccatgctgagagtataacttctttcattaaggagagtgttgatgaggagctgaaggatgcagactcatctaaggcttctcagaagaagaggctcaccttttgcgtggaagggaatattagtgttgggaagtctacctttctccaaagaatagctaatgagaccatcgaactgcgtgatcttgtagaaatagtgcctgaacctgttgctaagtggcaggatattggccctgaccacttcaatatattggatgctttctatgctgagccacataggtatgcctatacctttcaaaattatgtgtttgtgacaagggtcatgcaagaaagggaatcttcaggtggaataaaacctctcagactgatggaaagaagtgttttcagtgataggatggtgagtttatcgtacttgcaaatactagttcagcaattgaacagaacactgtagtttccttctggtgcaattttttttcctcttttgtgtgactaaactattctttcattatgcactaggtatttgttcgtgctgttcatgaagctaactggatgaatgagatggagatcagcatttacgactcatggtttgatcctgttgtgtcatcgcttccaggtcttatccctgatggatttatctatctaagagctagcccagatacttgccacaaaagaatgatgctccggaaaagagcagaggaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttgcttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttggaaggttccttgcctccagcaattcgagatcgtgtcttttacttggaaggagatcacatgcactcaagcatccagaaggtatttttgctgaccttagcttgctctgaaagctccagtatcaagcatcatagttacataatggtgccctttttgctatgtaggtccctgctctggtcttggattgtgaacctgacattgatttcaacaaagatatagaagctaaacggcagtaagtttgcaaaccttcttttatcttaacttttgtccataacattgatttttatcttttaagtacttgctttgggaggctctgcctacttgtttacgagatggagcttctttttacccttataatgcagttttatttatcagttattggatgccaacatcaaaaagtaggtcgtgtaaggccttgcatattcatctgaaaatttttagcattctcattgactcattgcattgtttgcctacacagatatgctcagcaagttgcagaattctttcaatttgtgaagaaaaagaaggaagctccatctgaacaaacaagcactgccaagaaccgtatcaatccacagatcatgcttcctcacaaaggcggattgtgggttcctgatggaagaaaccctttctcaggatctgctatgaatctgaacttcagaagagccatgtcttcctatctctcgacataggatttcagctccagaatgaacgtaggatcttacaaatcccactctcactgaccttgtaaatgggcctatgcgttaagttaaacctaggtatgctagccactgatgtaagatagtctgccaccgcatctccatcttttgtaaatgatcatcttccaccctttccgagttccatgttttgtagtagcgtcagcttccgtttgtctgagttctggtatctgtatcgttatgttggttgctgactacattctgttagatgatccggaactctttgacatttctgggaaagatgcttcagtacttgccgtttgtttgtcatcaaggttgccatgattggtcatgcatttgttcc
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| CDS seq | atgcacaggctctccttcctccaggccaccatcattgacgcgccgctgctcctctcctccgcctccatggccaccgtgccggcgctgcggctcggctcccccgccgcgctcctcgccgcgcgccgcccgccgcggtggctgcggtgcggcggcggcggtgtcgggggagggggagggggagtgggagtggcgcggagggggatggcgtgctccgtggaggccttggcgaggcgcggtgggggcggcgagtcggagtcggagaatgaggaggaggaggagaagcggaggggcagggcgggggagaggaggctcagaggcggcgggagcgccgcggcggcggcggcggcggcggggagcggggagctcctctccatccccggcgtggggcctcgcaaccagaggaagctcgtggacaacggattcgagggcgtcgcgcagcttaagcagctctatcgggataagttctttggaaaatatagcgagaagatggttgagtttttacagagctcggttggcatcattcataagaaccatgctgagagtataacttctttcattaaggagagtgttgatgaggagctgaaggatgcagactcatctaaggcttctcagaagaagaggctcaccttttgcgtggaagggaatattagtgttgggaagtctacctttctccaaagaatagctaatgagaccatcgaactgcgtgatcttgtagaaatagtgcctgaacctgttgctaagtggcaggatattggccctgaccacttcaatatattggatgctttctatgctgagccacataggtatgcctatacctttcaaaattatgtgtttgtgacaagggtcatgcaagaaagggaatcttcaggtggaataaaacctctcagactgatggaaagaagtgttttcagtgataggatggtatttgttcgtgctgttcatgaagctaactggatgaatgagatggagatcagcatttacgactcatggtttgatcctgttgtgtcatcgcttccaggtcttatccctgatggatttatctatctaagagctagcccagatacttgccacaaaagaatgatgctccggaaaagagcagaggaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttgcttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttggaaggttccttgcctccagcaattcgagatcgtgtcttttacttggaaggagatcacatgcactcaagcatccagaaggtccctgctctggtcttggattgtgaacctgacattgatttcaacaaagatatagaagctaaacggcaatatgctcagcaagttgcagaattctttcaatttgtgaagaaaaagaaggaagctccatctgaacaaacaagcactgccaagaaccgtatcaatccacagatcatgcttcctcacaaaggcggattgtgggttcctgatggaagaaaccctttctcaggatctgctatgaatctgaacttcagaagagccatgtcttcctatctctcgacatag
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| Protein seq | MHRLSFLQATIIDAPLLLSSASMATVPALRLGSPAALLAARRPPRWLRCGGGGVGGGGGGVGVARRGMACSVEALARRGGGGESESENEEEEEKRRGRAGERRLRGGGSAAAAAAAAGSGELLSIPGVGPRNQRKLVDNGFEGVAQLKQLYRDKFFGKYSEKMVEFLQSSVGIIHKNHAESITSFIKESVDEELKDADSSKASQKKRLTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPHRYAYTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVTLDYLQGLHEKHESWLLPSKGGGTGVLSVSQLPTHLEGSLPPAIRDRVFYLEGDHMHSSIQKVPALVLDCEPDIDFNKDIEAKRQYAQQVAEFFQFVKKKKEAPSEQTSTAKNRINPQIMLPHKGGLWVPDGRNPFSGSAMNLNFRRAMSSYLST |
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| Function | Deoxycytidine kinase [UniProtKB/Swiss-Prot:P27707] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0018130 | OsLaMu_05g0018130.01 | Chr05 | 21896635 | 21901446 | + | NAM | ||
| CDS seq | atgcacaggctctccttcctccaggccaccatcattgacgcgccgctgctcctctcctccgcctccatggccaccgtgccggcgctgcggctcggctcccccgccgcgctcctcgccgcgcgccgcccgccgcggtggctgcggtgcggcggcggcggtgtcgggggagggggagggggagtgggagtggcgcggagggggatggcgtgctccgtggaggccttggcgaggcgcggtgggggcggcgagtcggagtcggagaatgaggaggaggaggagaagcggaggggcagggcgggggagaggaggctcagaggcggcgggagcgccgcggcggcggcggcggcggcggggagcggggagctcctctccatccccggcgtggggcctcgcaaccagaggaagctcgtggacaacggattcgagggcgtcgcgcagcttaagcagctctatcgggataagttctttggaaaatatagcgagaagatggttgagtttttacagagctcggttggcatcattcataagaaccatgctgagagtataacttctttcattaaggagagtgttgatgaggagctgaaggatgcagactcatctaaggcttctcagaagaagaggctcaccttttgcgtggaagggaatattagtgttgggaagtctacctttctccaaagaatagctaatgagaccatcgaactgcgtgatcttgtagaaatagtgcctgaacctgttgctaagtggcaggatattggccctgaccacttcaatatattggatgctttctatgctgagccacataggtatgcctatacctttcaaaattatgtgtttgtgacaagggtcatgcaagaaagggaatcttcaggtggaataaaacctctcagactgatggaaagaagtgttttcagtgataggatggtatttgttcgtgctgttcatgaagctaactggatgaatgagatggagatcagcatttacgactcatggtttgatcctgttgtgtcatcgcttccaggtcttatccctgatggatttatctatctaagagctagcccagatacttgccacaaaagaatgatgctccggaaaagagcagaggaaggtggtgttactcttgactacttgcaaggtttgcatgagaaacacgagagctggttgcttccttcaaaaggaggaggtactggtgtgttatctgtcagtcagctgcccacacatttggaaggttccttgcctccagcaattcgagatcgtgtcttttacttggaaggagatcacatgcactcaagcatccagaaggtccctgctctggtcttggattgtgaacctgacattgatttcaacaaagatatagaagctaaacggcaatatgctcagcaagttgcagaattctttcaatttgtgaagaaaaagaaggaagctccatctgaacaaacaagcactgccaagaaccgtatcaatccacagatcatgcttcctcacaaaggcggattgtgggttcctgatggaagaaaccctttctcaggatctgctatgaatctgaacttcagaagagccatgtcttcctatctctcgacatag
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| Protein seq | MHRLSFLQATIIDAPLLLSSASMATVPALRLGSPAALLAARRPPRWLRCGGGGVGGGGGGVGVARRGMACSVEALARRGGGGESESENEEEEEKRRGRAGERRLRGGGSAAAAAAAAGSGELLSIPGVGPRNQRKLVDNGFEGVAQLKQLYRDKFFGKYSEKMVEFLQSSVGIIHKNHAESITSFIKESVDEELKDADSSKASQKKRLTFCVEGNISVGKSTFLQRIANETIELRDLVEIVPEPVAKWQDIGPDHFNILDAFYAEPHRYAYTFQNYVFVTRVMQERESSGGIKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSWFDPVVSSLPGLIPDGFIYLRASPDTCHKRMMLRKRAEEGGVTLDYLQGLHEKHESWLLPSKGGGTGVLSVSQLPTHLEGSLPPAIRDRVFYLEGDHMHSSIQKVPALVLDCEPDIDFNKDIEAKRQYAQQVAEFFQFVKKKKEAPSEQTSTAKNRINPQIMLPHKGGLWVPDGRNPFSGSAMNLNFRRAMSSYLST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.705182 | 3.286895 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0430200 | RBH | 4.627671 | 1.437820 | 3.139434 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g35520 | RBH | 2.197807 | 0.697773 | 0.698768 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0430200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018100 | RBH | 0.424964 | 1.303595 | 1.732808 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018110 | RBH | 0.122867 | 1.438249 | 1.807421 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017920 | RBH | 1.137510 | 1.444927 | 6.458417 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017960 | RBH | 0.306052 | 0.077332 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018200 | RBH | 9.097214 | 7.719294 | 7.241073 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0323400 | RBH | 14.7744455 | 11.472936 | 52.308443 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017690 | RBH | 0.671668 | 0.079681 | 1.035850 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0334800 | RBH | 10.711529 | 7.4915335 | 34.006887 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018020 | RBH | 0.194462 | 0.120324 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017930 | RBH | 0.542468 | 13.062118 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018060 | RBH | 6.823928 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018110 | RBH | 1.127918 | 0.948350 | 0.399886 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041010 | RBH | 0.706997 | 0.530456 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017620 | RBH | 0.989818 | 1.325527 | 2.006400 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017910 | RBH | 2.169130 | 3.900391 | 7.144516 |
