Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0017160 | OGI:05054650 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:20998208-21000876 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctgaaatccaatgcacaccatcatgaaatggagtgcacaatccattacagcaacatgcaacaaaaatgtagtctcaaatcatcattctttttcttctttccttgaaaGaaaaagatcagtagtggacaacccgagtgaaataaaaagtacaatagcttacaaaatgtgaaaatgaaaatagaaagagaagactctacagatcttgtcagaataccaaatataagcaaagtgggtagctactccagtgatacaaggcttgaaatactgccaattgacctggagaacattggtacaaaacaccaacaggaaatacttcaaccttttgaaggatgtgtgcaaccagatccttgctttatcacattctggaaagacttgatccaccaaattagaatactatctcatggtaagttgttccgttgatcagacaacaaattagtgcacacacactgaaagtctctgacagatttgagtccaccagatctcttgtacctacgaaatggcaactcccttcattatgcacagccttcatagaccaaccacacccccttgttgatattctttaggaataatctgcttttattggaagcaaaattaggccttgatacagtctgactaccccttgttggtgttgcaacaagtttcaagatgttttctgtgtgacaaatttgctcatacctctaggatgactatcaggaaatagcagtataggcatatccaggacaccactctgtacaagcttgtatatacatttgggaagtttgctagtcatgtggcataaagctaggtaatgaagatgaaacaactggctaatggtttctggtaattctaaaatatctgactcactaagatcaagaacacgcaagttcttaaattcagatagaaatttactaggaagatgactcaatgacaacgaagagcttctaagaactaataatgtccgtagcctttccaacttacacttactcttgagctgtggaaaataatcagttgagacagacaagtggcgcactgttggtggaatcacactaggcatgccttcatcAatgttcatgcaatcgtgaacagaagcgtgctgtgccaaatcgtgcatgaggttatctaggaaataaaatgtttggttgtctttgctggcagtacagaagaatgaccgtgaaagcagatcataaaagtattcttgtgctaaatcatactccccttttctttccttccttgatgtttgaataaaacccagagccacccacatcttcaccaatttatctcgttgaaacctacagccccttggaaatatgctgcagtatgcaaagcatcgctgaaggtgtccaggtaagtgctgataactgtgttggagagacgatataatgatgttatgactaatttctgcatccagaagtgctctccacctccatgtactcctggtgtttcttagcatctgtccaagagccttggaaactaaaggggagccctttgcctttgcagcaatggttcttccaatctcttgcaaatcaggaggaatatccttgctttctccacccagagcagcctcctttaacaacaaccagcagtcgctgcttcccaacacatcaaGggagacaacatgagtcgaattgagataccgcgctactagtttcattcgagtggtcaccaagatcttgctgcctctcccagcagacctaagaggtgccagcacctttctccacagatccttattctccagctccatcttagcctcatcattccaaacatcatcAagaactagtagaaacctctttgacctgaccaatacttcaagttttgcctgcagaatatccaatttggcagaattatcaccgtacagcgtatcatccggaccaccaatggactgcaatatctcccttgttagctccgcgacatcagatctatcccagacacagacccaggctttgatatcaaatttctgttcaatcctctcatcgctgtaaacgaactgcgcgacggttgtcttccccattccaccatgtccgacgattgcaacaaccggaagagcagaagagcatgcgttctccggacaatccaccagcctgctgattacctcgccacactctttctcacgcccaaacaccttcctctccgtgagcacggagccggtcacgcggttcggcgacctcacgccgcgacccgcctcgccggcttcttcttccgccgcggcgtcaacgagacgctcggagacgtcgtggatgcggtcgatcctgcccaccagtcgcttgagctcccgggagggcggcttgccgcgagctaagcaggacgctaacgaagggctgagccggctcccgtggcggcggcggaggaggagctcgtcgaggaggtcgtcggcctcggcgacggcgcccttgagctggaggagccagtccgcgaggtcgcgctgccccgcgtccccacgccgctcgaccccgcgcgcgacgggctggatccggaggagcgcgcccgcgaggtcccgcatccccgcggcgccgtcgccgtcgccgccggcgtgggcgaggaggcggtcggccagggacgagatctcctgcgacacgggccacggcgccgcgggcgcgggcgcgggcatctcgtgggctagggttagcttggcgcggcggcggttgttgcttgtgccgacgagcaattgggggcgtcgtcgtcgtcgatttggg
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| CDS seq | atgcccgcgcccgcgcccgcggcgccgtggcccgtgtcgcaggagatctcgtccctggccgaccgcctcctcgcccacgccggcggcgacggcgacggcgccgcggggatgcgggacctcgcgggcgcgctcctccggatccagcccgtcgcgcgcggggtcgagcggcgtggggacgcggggcagcgcgacctcgcggactggctcctccagctcaagggcgccgtcgccgaggccgacgacctcctcgacgagctcctcctccgccgccgccacgggagccggctcagcccttcgttagcgtcctgcttagctcgcggcaagccgccctcccgggagctcaagcgactggtgggcaggatcgaccgcatccacgacgtctccgagcgtctcgttgacgccgcggcggaagaagaagccggcgaggcgggtcgcggcgtgaggtcgccgaaccgcgtgaccggctccgtgctcacggagaggaaggtgtttgggcgtgagaaagagtgtggcgaggtaatcagcaggctggtggattgtccggagaacgcatgctcttctgctcttccggttgttgcaatcgtcggacatggtggaatggggaagacaaccgtcgcgcagttcgtttacagcgatgagaggattgaacagaaatttgatatcaaagcctgggtctgtgtctgggatagatctgatgtcgcggagctaacaagggagatattgcagtccattggtggtccggatgatacgctgtacggtgataattctgccaaattggatattctgcaggcaaaacttgaagtattggtcaggtcaaagaggtttctactagttctTgatgatgtttggaatgatgaggctaagatggagctggagaataaggatctgtggagaaaggtgctggcacctcttaggtctgctgggagaggcagcaagatcttggtgaccactcgaatgaaactagtagcgcggtatctcaattcgactcatgttgtctccCttgatgtgttgggaagcagcgactgctggttgttgttaaaggaggctgctctgggtggagaaagcaaggatattcctcctgatttgcaagagattggaagaaccattgctgcaaaggcaaagggctcccctttagtttccaaggctcttggacagatgctaagaaacaccaggagtacatggaggtggagagcacttctggatgcagaaattagtcataacatcattatatcgtctctccaacacagttatcagcacttacctggacaccttcagcgatgctttgcatactgcagcatatttccaaggggctgtaggtttcaacgagataaattggtgaagatgtgggtggctctgggttttattcaaacatcaaggaaggaaagaaaaggggagtatgatttagcacaagaatacttttatgatctgctttcacggtcattcttctgtactgccagcaaagacaaccaaacattttatttcctagataacctcatgcacgatttggcacagcacgcttctgttcacgattgcatgaacatTgatgaaggcatgcctagtgtgattccaccaacagtgcgccacttgtctgtctcaactgattattttccacagctcaagagtaagtgtaagttggaaaggctacggacattattagttcttagaagctcttcgttgtcattgagtcatcttcctagtaaatttctatctgaatttaagaacttgcgtgttcttgatcttagtgagtcagatattttagaattaccagaaaccattagccagttgtttcatcttcattacctagctttatgccacatgactagcaaacttcccaaatgtatatacaagcttgtacagagtggtgtcctggatatgcctatactgctatttcctgatagtcatcctagaggtatgagcaaatttgtcacacagaaaacatcttga
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| Protein seq | MPAPAPAAPWPVSQEISSLADRLLAHAGGDGDGAAGMRDLAGALLRIQPVARGVERRGDAGQRDLADWLLQLKGAVAEADDLLDELLLRRRHGSRLSPSLASCLARGKPPSRELKRLVGRIDRIHDVSERLVDAAAEEEAGEAGRGVRSPNRVTGSVLTERKVFGREKECGEVISRLVDCPENACSSALPVVAIVGHGGMGKTTVAQFVYSDERIEQKFDIKAWVCVWDRSDVAELTREILQSIGGPDDTLYGDNSAKLDILQAKLEVLVRSKRFLLVLDDVWNDEAKMELENKDLWRKVLAPLRSAGRGSKILVTTRMKLVARYLNSTHVVSLDVLGSSDCWLLLKEAALGGESKDIPPDLQEIGRTIAAKAKGSPLVSKALGQMLRNTRSTWRWRALLDAEISHNIIISSLQHSYQHLPGHLQRCFAYCSIFPRGCRFQRDKLVKMWVALGFIQTSRKERKGEYDLAQEYFYDLLSRSFFCTASKDNQTFYFLDNLMHDLAQHASVHDCMNIDEGMPSVIPPTVRHLSVSTDYFPQLKSKCKLERLRTLLVLRSSSLSLSHLPSKFLSEFKNLRVLDLSESDILELPETISQLFHLHYLALCHMTSKLPKCIYKLVQSGVLDMPILLFPDSHPRGMSKFVTQKTS |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0017160 | OsLaMu_05g0017160.01 | Chr05 | 20998208 | 21000876 | - | NAM | ||
| CDS seq | atgcccgcgcccgcgcccgcggcgccgtggcccgtgtcgcaggagatctcgtccctggccgaccgcctcctcgcccacgccggcggcgacggcgacggcgccgcggggatgcgggacctcgcgggcgcgctcctccggatccagcccgtcgcgcgcggggtcgagcggcgtggggacgcggggcagcgcgacctcgcggactggctcctccagctcaagggcgccgtcgccgaggccgacgacctcctcgacgagctcctcctccgccgccgccacgggagccggctcagcccttcgttagcgtcctgcttagctcgcggcaagccgccctcccgggagctcaagcgactggtgggcaggatcgaccgcatccacgacgtctccgagcgtctcgttgacgccgcggcggaagaagaagccggcgaggcgggtcgcggcgtgaggtcgccgaaccgcgtgaccggctccgtgctcacggagaggaaggtgtttgggcgtgagaaagagtgtggcgaggtaatcagcaggctggtggattgtccggagaacgcatgctcttctgctcttccggttgttgcaatcgtcggacatggtggaatggggaagacaaccgtcgcgcagttcgtttacagcgatgagaggattgaacagaaatttgatatcaaagcctgggtctgtgtctgggatagatctgatgtcgcggagctaacaagggagatattgcagtccattggtggtccggatgatacgctgtacggtgataattctgccaaattggatattctgcaggcaaaacttgaagtattggtcaggtcaaagaggtttctactagttctTgatgatgtttggaatgatgaggctaagatggagctggagaataaggatctgtggagaaaggtgctggcacctcttaggtctgctgggagaggcagcaagatcttggtgaccactcgaatgaaactagtagcgcggtatctcaattcgactcatgttgtctccCttgatgtgttgggaagcagcgactgctggttgttgttaaaggaggctgctctgggtggagaaagcaaggatattcctcctgatttgcaagagattggaagaaccattgctgcaaaggcaaagggctcccctttagtttccaaggctcttggacagatgctaagaaacaccaggagtacatggaggtggagagcacttctggatgcagaaattagtcataacatcattatatcgtctctccaacacagttatcagcacttacctggacaccttcagcgatgctttgcatactgcagcatatttccaaggggctgtaggtttcaacgagataaattggtgaagatgtgggtggctctgggttttattcaaacatcaaggaaggaaagaaaaggggagtatgatttagcacaagaatacttttatgatctgctttcacggtcattcttctgtactgccagcaaagacaaccaaacattttatttcctagataacctcatgcacgatttggcacagcacgcttctgttcacgattgcatgaacatTgatgaaggcatgcctagtgtgattccaccaacagtgcgccacttgtctgtctcaactgattattttccacagctcaagagtaagtgtaagttggaaaggctacggacattattagttcttagaagctcttcgttgtcattgagtcatcttcctagtaaatttctatctgaatttaagaacttgcgtgttcttgatcttagtgagtcagatattttagaattaccagaaaccattagccagttgtttcatcttcattacctagctttatgccacatgactagcaaacttcccaaatgtatatacaagcttgtacagagtggtgtcctggatatgcctatactgctatttcctgatagtcatcctagaggtatgagcaaatttgtcacacagaaaacatcttga
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| Protein seq | MPAPAPAAPWPVSQEISSLADRLLAHAGGDGDGAAGMRDLAGALLRIQPVARGVERRGDAGQRDLADWLLQLKGAVAEADDLLDELLLRRRHGSRLSPSLASCLARGKPPSRELKRLVGRIDRIHDVSERLVDAAAEEEAGEAGRGVRSPNRVTGSVLTERKVFGREKECGEVISRLVDCPENACSSALPVVAIVGHGGMGKTTVAQFVYSDERIEQKFDIKAWVCVWDRSDVAELTREILQSIGGPDDTLYGDNSAKLDILQAKLEVLVRSKRFLLVLDDVWNDEAKMELENKDLWRKVLAPLRSAGRGSKILVTTRMKLVARYLNSTHVVSLDVLGSSDCWLLLKEAALGGESKDIPPDLQEIGRTIAAKAKGSPLVSKALGQMLRNTRSTWRWRALLDAEISHNIIISSLQHSYQHLPGHLQRCFAYCSIFPRGCRFQRDKLVKMWVALGFIQTSRKERKGEYDLAQEYFYDLLSRSFFCTASKDNQTFYFLDNLMHDLAQHASVHDCMNIDEGMPSVIPPTVRHLSVSTDYFPQLKSKCKLERLRTLLVLRSSSLSLSHLPSKFLSEFKNLRVLDLSESDILELPETISQLFHLHYLALCHMTSKLPKCIYKLVQSGVLDMPILLFPDSHPRGMSKFVTQKTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.618720 | 4.152929 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0414300 | RBH | 1.020153 | 1.595801 | 2.127165 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34230 | RBH | 0.718788 | 1.023703 | 0.435248 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0414300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017190 | RBH | 0.523748 | 11.175961 | 3.527325 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017190 | RBH | 0.192530 | 1.603694 | 0.980432 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0016990 | RBH | 1.686724 | 6.591168 | 5.594368 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017030 | RBH | 0.133508 | 0.287088 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017220 | RBH | 2.711731 | 8.555457 | 8.303566 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0310000 | SBH | 4.394151 | 28.8432245 | 9.272139 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016720 | RBH | 0.408556 | 0.769699 | 0.546188 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0319300 | RBH | 6.824114 | 28.6087225 | 16.1852565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017070 | RBH | 0.075440 | 0.063013 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016950 | RBH | 0.318620 | 6.746418 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017090 | RBH | 3.114019 | 12.107944 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017120 | RBH | 0.548834 | 0.268333 | 0.517519 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016630 | RBH | 0.518769 | 2.428780 | 1.498258 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016940 | RBH | 1.126152 | 13.579868 | 4.485899 |
