Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0016620 | OGI:03070620 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:20430000-20430372 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcaaggacactattgttgatttactaacctctataagaaacacggacatgaataaaaaaggaactattcgggtagtatctacaaatattaccgaaaacattgttaaaatacttctacgagagggttttattgaaagtgttcggaaacatcaggaaagtaatagatatttcttggtttcaactttgcgacatcaaaagagaaagactagaaagggaatatatagaactagaacctttttaaagcgtatcagccgacctggcttatgaatttatgccaactatcaaggaattcctaaggttttggccggaatgggaattgctattctttctacttctcgaggtataatgacagatcgagaagctcgactaa |
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| CDS seq | atgggcaaggacactattgttgatttactaacctctataagaaacacggacatgaataaaaaaggaactattcgggtagtatctacaaatattaccgaaaacattgttaaaatacttctacgagagggttttattgaaagtgttcggaaacatcaggaaaccgacctggcttatgaatttatgccaactatcaaggaattcctaaggttttggccggaatgggaattgctattctttctacttctcgagatcgagaagctcgactaa |
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| Protein seq | MGKDTIVDLLTSIRNTDMNKKGTIRVVSTNITENIVKILLREGFIESVRKHQETDLAYEFMPTIKEFLRFWPEWELLFFLLLEIEKLD |
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| Function | 30S ribosomal protein S8, chloroplastic [UniProtKB/Swiss-Prot:A1E9W0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0016620 | OsLaMu_05g0016620.01 | Chr05 | 20430000 | 20430372 | + | NAM | ||
| CDS seq | atgggcaaggacactattgttgatttactaacctctataagaaacacggacatgaataaaaaaggaactattcgggtagtatctacaaatattaccgaaaacattgttaaaatacttctacgagagggttttattgaaagtgttcggaaacatcaggaaaccgacctggcttatgaatttatgccaactatcaaggaattcctaaggttttggccggaatgggaattgctattctttctacttctcgagatcgagaagctcgactaa
More
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| Protein seq | MGKDTIVDLLTSIRNTDMNKKGTIRVVSTNITENIVKILLREGFIESVRKHQETDLAYEFMPTIKEFLRFWPEWELLFFLLLEIEKLD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007550 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007540 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007760 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007600 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016690 | RBH | 0.000000 | 0.000000 | 2.130422 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205600 | SBH | 11.7140845 | 7.2092875 | 6.559548 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007700 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007650 | RBH | 1.013970 | 0.452268 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007450 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007370 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007990 | RBH | 3.574792 | 6.036655 | 12.630600 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
