Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0014830 | OGI:05048810 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:18672819-18677604 | ||||||||
| Gene Symbol | OsPR2, Gns1, OsEGL1 | ||||||||||
| DNA seq | aaatcttttaaattttttctttttttttctcaaacgcctacgtgaggcaaaatacctcgacgtacggcgtacaaatgtacagtattacaatctgtgtacgtacaaaatacacctcctaagtacgtacatatacatgtatatatattgcaaccctctctatatagtaatagtaatctaggaagggaaaatgggggctaattcgcctaccacagcgtaccgtattttgtacctgtagcttcccttctatacataccgtaataatacggtatatatataatatacccaATatatatactatcgcgtacgcatctgacagacgtacacttggtgtacgtgtcctctcagcggtcgcaagccaagccctctgtacaatactgtaatgtacaggtacgtgtacgtgtatactacactacctgcggtcacgtatacgcatacgtatgcgtatatgtgtacggaatgcatcagaagctgatggggtagacgtgctgcatgttggggtagaagaggccccaattctgctcgacgccggcgtccttctggttctcgttgaacatggagaagacgtaggtctcgatggcgccggggtggcgcggcgtgccgcggccgacgtggttgatgaggttctggttgtagatccgggcgttggccggcgaggcggacatgccgccggcggagggccagccggtctcggagacgacgagggagacgccggagccgccgtgcttggccatggcggcgtagaacgcgtcgacggtggtgtcgaacaggttctggtacccgtaggcgccgtcctggacgacggtgccggcggcggtgaagagcgcgtaggagacgtcgacgctgccctggctgtaggtgtaggagaagtaggggtagatgttggcgagcagcggcgcgccggtgcgggcgaggaagctcaggacgggcgccatgaacgcctgcgactcgccggtgaactccgcggcggacggcgggctgtacacggcgaggagcgcctgcgacaccgacgtcgtcaccttgatgtggcccagccccgccgacaccagcgcgccccggacgttctccatggccgggaccaggctggacgtggcgccgccggcgacctcgttcccgacggcgacgtaccggaacgacaccgacgggtaggcctggatgttgttccgcacccacgacgccgccgcggcggggctggcggcgaggttggagagcacgtcgttgggcgcgccgacgacgacgctgatccccgtgccgcccaccgactgcagcgccgcctggtccggcgcgtacagccgcatcgacgtgatgccgttggagcggtacatccccaccaccgagctcgccggcggcaggttgttcgcgctcatgccgtagcacaccccgatcgcctccgcctctgcatcaccatcatatcacgttagtaaaattttttattactttaattatttacagcaattaattaactattactaagcttgtggttgctttatttttttcgatgttcattttaagacttgtttatgtgcgtttgtctagtacggacttatataatactccgtaattggttgtaactcattgagtaaaggctgggattctattctattgttaaaaaaataactaatttatagagctgtaaataattatgtttttatgtttagttactgttaatgaacagtgcatgggtgtacatgtattactgtttaatattaatctcgttttaaatcgggaaatgggtacacatagcaagaaagggcggccggagagtagtgtagaaaagtgacagaatgcgatgcatgtactactattgaagaagtacaaatacatacacatcctttttttgacttattattttttcgatgaataataatttaaattttaatcttaatctcaagaaaaagacatttaactgaaatttgtatgcacgcttggactagcttgatttaatttgcataTtttttttgtgcttctctctctttctctagactctactactggcagacaaaaatgggatgtttttagctttgttttactgaaaaatattatactgattaagttggtgtcaagtgcacgcacactgacgaggaataatatatatttgcttcttgcttagttgcttgaatgctgcaggtttcctgcttctctagcttgacctagttgtcactcgtgactaaagacgtgtctaaagtgtgtaataactttaacaagtatgctaataagctagctcgtgaccaaggataaccttaaacaacgggataagcttttgaccctaagtggattaatctcttactagctagcaatctcactctactacctaaccctgaaaattaggtctaatagttgaaaactctcccctgatcacggcatctagctatagctcttgatgcaatttttttttgactttggaaagctatcaagtgtttatcctacaacaaatagcatgtacttgcacgccacttgtcagctaatttcggagatggacaaggaatatactacccaagaaacatagagaaattgagagagaaaaattgagatagagaaattgaaagagagagagagagagagagagagatggagatgtaatggtttggtccaacgtcagcagcatgaccgttggatagtccacgtaaggtcgatgtggccaaaggggaagctagctagctaactaacaaagcagcatctaataagctttagctgaagcttagtttagaccacccgtgtgctaatagtcagtgagtgcagtggagtaatatgcaactactcaagaaacgtacatgtccaattaaatgaagcacacccctacaacttactaattgctccaatttgtcaggtcacaacatgctttaggacaacataagcaacacctgtcctaactaattaatttctgactactggtgatcatggatgtgccatgtgtttactactactctctttacagtttagttgcactatatgtgtcaatatttgtgttagaacaagactaatagctataatatgtagtacactatttagtagtatatatccatcattagatattgttagtgagtgagtgagttagttactagttagtacaacatgcatatatcttacttaaagaatggaacagtgttggtacaagatatgggagtttgtgtcaacctggaggaccattggactggcaggtacaatatcatgcatcaattgaaaaatgtcaagcgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctagagagagaaaactaaagacgacagataatgagatatggtgtggtgttgggttagggggtggttaagcagttgttgcaaccgaatcaataagggaacaaacgaagcggtagggatcaagagagagatagaaaagcttatatttgtgagagagatggcacttgataaattgaattaactttcatgaatgtcaaaaacaaaaaggctatctctagtagctgaattcttagcctaacatgactactgatgagagatagaaagaaagaaagatataaagctaggttatgtgttgaaacattctaaagttccaaaagatgcaagcaactgtgagatgacatgcatgcatgcaccaaacatgcaaagacttcatctgcaagattgttagttaatttgtgtacgaaatgtgcctctaaaagctagctgctagctagctagaaacatccctttcggcatgctcccaagatactatgcttgcttgcagaaattaattactactcgcagtaatttttcttgttaattaaactgcagtcaattatactatattcttcagacatatatatatgcacttttgttttggtgaggtgccaccactcaaaaaggatagatatatctttgagagaacgactctcgataagcaaaaattcagagaggtgagtcatcagagaagatcagtcaaaattgaggtttcctgatcttttaacgaaagtgattgatgcgaggtttttactggtcccatagacgaagacgacgatgcgtgtgagtgatgggcagaatgagacggcacgagacgagcttaattaaccttctttcagcagcagcagcagcagcagcaattaagcagcagaagagaataattaaactcgcagtgagagcgacaggcaccgaaactgcagggggaggcgtttaacgagatgactcgctaacgagagttgttatctctcttttctgcatgacgttgttgatgaaaattgatgtatatctatgtgactcttgaccactgtgtgtattaTttgttagctagctatctctatttagctagcccatttctaccaattataatctcttcatctttctctgtctcccaagaaattaatcattaactttttgcaatctatccacacaccatgcatgacgtgcgtaaacaaaacctttttttggtaatagaataaaattaaaccccagactctgcatcgtgagcgagtgcatgaactaaactaaaacttatatatacctaatgattttccaaacatgcaacaaatcgaaaaaaaaacacaagagagagatagagagagaaaaagaaaaggaaagagagggaaaggtaatcactttgaggaatggaggcaaaggcaccgaggagcaatgcgagagcgaacatggaggctacaccttggctagccatttctctcaaaacctctctcaaattccaaaagctaaaaatgagctatatataggagatgtggtttgtgtgtgctgctgccaatgagctaaccaacacgcctcctctctgagtctctccttgtttcgttggtgt
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| CDS seq | atggctagccaaggtgtagcctccatgttcgctctcgcattgctcctcggtgcctttgcctccattcctcaaaaggcggaggcgatcggggtgtgctacggcatgagcgcgaacaacctgccgccggcgagctcggtggtggggatgtaccgctccaacggcatcacgtcgatgcggctgtacgcgccggaccaggcggcgctgcagtcggtgggcggcacggggatcagcgtcgtcgtcggcgcgcccaacgacgtgctctccaacctcgccgccagccccgccgcggcggcgtcgtgggtgcggaacaacatccaggcctacccgtcggtgtcgttccggtacgtcgccgtcgggaacgaggtcgccggcggcgccacgtccagcctggtcccggccatggagaacgtccggggcgcgctggtgtcggcggggctgggccacatcaaggtgacgacgtcggtgtcgcaggcgctcctcgccgtgtacagcccgccgtccgccgcggagttcaccggcgagtcgcaggcgttcatggcgcccgtcctgagcttcctcgcccgcaccggcgcgccgctgctcgccaacatctacccctacttctcctacacctacagccagggcagcgtcgacgtctcctacgcgctcttcaccgccgccggcaccgtcgtccaggacggcgcctacgggtaccagaacctgttcgacaccaccgtcgacgcgttctacgccgccatggccaagcacggcggctccggcgtctccctcgtcgtctccgagaccggctggccctccgccggcggcatgtccgcctcgccggccaacgcccggatctacaaccagaacctcatcaaccacgtcggccgcggcacgccgcgccaccccggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacgccggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcagcttctga
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| Protein seq | MASQGVASMFALALLLGAFASIPQKAEAIGVCYGMSANNLPPASSVVGMYRSNGITSMRLYAPDQAALQSVGGTGISVVVGAPNDVLSNLAASPAAAASWVRNNIQAYPSVSFRYVAVGNEVAGGATSSLVPAMENVRGALVSAGLGHIKVTTSVSQALLAVYSPPSAAEFTGESQAFMAPVLSFLARTGAPLLANIYPYFSYTYSQGSVDVSYALFTAAGTVVQDGAYGYQNLFDTTVDAFYAAMAKHGGSGVSLVVSETGWPSAGGMSASPANARIYNQNLINHVGRGTPRHPGAIETYVFSMFNENQKDAGVEQNWGLFYPNMQHVYPISF |
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| Function | Lichenase-2 (Fragment) [UniProtKB/Swiss-Prot:P12257] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0014830 | OsLaMu_05g0014830.01 | Chr05 | 18672819 | 18677604 | - | NAM | ||
| CDS seq | atggctagccaaggtgtagcctccatgttcgctctcgcattgctcctcggtgcctttgcctccattcctcaaaaggcggaggcgatcggggtgtgctacggcatgagcgcgaacaacctgccgccggcgagctcggtggtggggatgtaccgctccaacggcatcacgtcgatgcggctgtacgcgccggaccaggcggcgctgcagtcggtgggcggcacggggatcagcgtcgtcgtcggcgcgcccaacgacgtgctctccaacctcgccgccagccccgccgcggcggcgtcgtgggtgcggaacaacatccaggcctacccgtcggtgtcgttccggtacgtcgccgtcgggaacgaggtcgccggcggcgccacgtccagcctggtcccggccatggagaacgtccggggcgcgctggtgtcggcggggctgggccacatcaaggtgacgacgtcggtgtcgcaggcgctcctcgccgtgtacagcccgccgtccgccgcggagttcaccggcgagtcgcaggcgttcatggcgcccgtcctgagcttcctcgcccgcaccggcgcgccgctgctcgccaacatctacccctacttctcctacacctacagccagggcagcgtcgacgtctcctacgcgctcttcaccgccgccggcaccgtcgtccaggacggcgcctacgggtaccagaacctgttcgacaccaccgtcgacgcgttctacgccgccatggccaagcacggcggctccggcgtctccctcgtcgtctccgagaccggctggccctccgccggcggcatgtccgcctcgccggccaacgcccggatctacaaccagaacctcatcaaccacgtcggccgcggcacgccgcgccaccccggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacgccggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcagcttctga
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| Protein seq | MASQGVASMFALALLLGAFASIPQKAEAIGVCYGMSANNLPPASSVVGMYRSNGITSMRLYAPDQAALQSVGGTGISVVVGAPNDVLSNLAASPAAAASWVRNNIQAYPSVSFRYVAVGNEVAGGATSSLVPAMENVRGALVSAGLGHIKVTTSVSQALLAVYSPPSAAEFTGESQAFMAPVLSFLARTGAPLLANIYPYFSYTYSQGSVDVSYALFTAAGTVVQDGAYGYQNLFDTTVDAFYAAMAKHGGSGVSLVVSETGWPSAGGMSASPANARIYNQNLINHVGRGTPRHPGAIETYVFSMFNENQKDAGVEQNWGLFYPNMQHVYPISF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0014830 | OsLaMu_05g0014830.02 | Chr05 | 18672819 | 18677604 | - | NAM | ||
| CDS seq | atggctagccaaggtgtagcctccatgttcgctctcgcattgctcctcggtgcctttgcctccattcctcaaaaggcggaggcgatcggggtgtgctacggcatgagcgcgaacaacctgccgccggcgagctcggtggtggggatgtaccgctccaacggcatcacgtcgatgcggctgtacgcgccggaccaggcggcgctgcagtcggtgggcggcacggggatcagcgtcgtcgtcggcgcgcccaacgacgtgctctccaacctcgccgccagccccgccgcggcggcgtcgtgggtgcggaacaacatccaggcctacccgtcggtgtcgttccggtacgtcgccgtcgggaacgaggtcgccggcggcgccacgtccagcctggtcccggccatggagaacgtccggggcgcgctggtgtcggcggggctgggccacatcaaggtgacgacgtcggtgtcgcaggcgctcctcgccgtgtacagcccgccgtccgccgcggagttcaccggcgagtcgcaggcgttcatggcgcccgtcctgagcttcctcgcccgcaccggcgcgccgctgctcgccaacatctacccctacttctcctacacctacagccagggcagcgtcgacgtctcctacgcgctcttcaccgccgccggcaccgtcgtccaggacggcgcctacgggtaccagaacctgttcgacaccaccgtcgacgcgttctacgccgccatggccaagcacggcggctccggcgtctccctcgtcgtctccgagaccggctggccctccgccggcggcatgtccgcctcgccggccaacgcccggatctacaaccagaacctcatcaaccacgtcggccgcggcacgccgcgccaccccggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacgccggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcagcttctga
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| Protein seq | MASQGVASMFALALLLGAFASIPQKAEAIGVCYGMSANNLPPASSVVGMYRSNGITSMRLYAPDQAALQSVGGTGISVVVGAPNDVLSNLAASPAAAASWVRNNIQAYPSVSFRYVAVGNEVAGGATSSLVPAMENVRGALVSAGLGHIKVTTSVSQALLAVYSPPSAAEFTGESQAFMAPVLSFLARTGAPLLANIYPYFSYTYSQGSVDVSYALFTAAGTVVQDGAYGYQNLFDTTVDAFYAAMAKHGGSGVSLVVSETGWPSAGGMSASPANARIYNQNLINHVGRGTPRHPGAIETYVFSMFNENQKDAGVEQNWGLFYPNMQHVYPISF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0014830 | OsLaMu_05g0014830.03 | Chr05 | 18672819 | 18677604 | - | NAM | ||
| CDS seq | atggctagccaaggtgtagcctccatgttcgctctcgcattgctcctcggtgcctttgcctccattcctcaaaaggcggaggcgatcggggtgtgctacggcatgagcgcgaacaacctgccgccggcgagctcggtggtggggatgtaccgctccaacggcatcacgtcgatgcggctgtacgcgccggaccaggcggcgctgcagtcggtgggcggcacggggatcagcgtcgtcgtcggcgcgcccaacgacgtgctctccaacctcgccgccagccccgccgcggcggcgtcgtgggtgcggaacaacatccaggcctacccgtcggtgtcgttccggtacgtcgccgtcgggaacgaggtcgccggcggcgccacgtccagcctggtcccggccatggagaacgtccggggcgcgctggtgtcggcggggctgggccacatcaaggtgacgacgtcggtgtcgcaggcgttcatggcgcccgtcctgagcttcctcgcccgcaccggcgcgccgctgctcgccaacatctacccctacttctcctacacctacagccagggcagcgtcgacgtctcctacgcgctcttcaccgccgccggcaccgtcgtccaggacggcgcctacgggtaccagaacctgttcgacaccaccgtcgacgcgttctacgccgccatggccaagcacggcggctccggcgtctccctcgtcgtctccgagaccggctggccctccgccggcggcatgtccgcctcgccggccaacgcccggatctacaaccagaacctcatcaaccacgtcggccgcggcacgccgcgccaccccggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacgccggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcagcttctga
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| Protein seq | MASQGVASMFALALLLGAFASIPQKAEAIGVCYGMSANNLPPASSVVGMYRSNGITSMRLYAPDQAALQSVGGTGISVVVGAPNDVLSNLAASPAAAASWVRNNIQAYPSVSFRYVAVGNEVAGGATSSLVPAMENVRGALVSAGLGHIKVTTSVSQAFMAPVLSFLARTGAPLLANIYPYFSYTYSQGSVDVSYALFTAAGTVVQDGAYGYQNLFDTTVDAFYAAMAKHGGSGVSLVVSETGWPSAGGMSASPANARIYNQNLINHVGRGTPRHPGAIETYVFSMFNENQKDAGVEQNWGLFYPNMQHVYPISF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 18672819 | 18674211 | - | OsLaMu_05g0014830.01 | OsLaMu_05g0014830.02,OsLaMu_05g0014830.01 | All |
| RI | Chr05 | 18672819 | 18674211 | - | OsLaMu_05g0014830.01 | OsLaMu_05g0014830.03,OsLaMu_05g0014830.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.153269 | 78.077599 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0375400 | RBH | 0.529882 | 0.467992 | 2.021434 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g31140 | RBH | 0.329774 | 0.289676 | 0.549551 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0375400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0014890 | RBH | 0.201582 | 99.760727 | 10.138625 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0014890 | RBH | 2.532385 | 6.477068 | 1.925786 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014730 | RBH | 0.262070 | 43.967777 | 8.630351 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0014760 | RBH | 0.328859 | 1.455300 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014910 | RBH | 1.223034 | 48.610905 | 18.930841 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0276800 | RBH | 19.8554095 | 89.589981 | 0.775554 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0014530 | RBH | 0.343081 | 4.319223 | 4.227051 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0386800 | SBH | 12.5387825 | 6.580813 | 0.135197 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014680 | RBH | 0.150737 | 1.606134 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0014720 | RBH | 0.700851 | 43.910549 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0014740 | RBH | 0.000000 | 118.787178 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0014800 | RBH | 3.810600 | 15.866119 | 5.279232 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045600 | RBH | 0.110860 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G014450 | RBH | 0.104418 | 1.854024 | 1.226060 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0014710 | RBH | 0.000000 | 141.130203 | 13.130313 |
