Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_05g0008900 OGI:05024170 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr05:8813466-8820236
Gene Symbol -
DNA seq

atggacagcgatgagaaggAaaaaaaaagagagaacaaggagacTAtcaccAaaaaaatggagatcaagaggatcaagcaaacaagagAaaacataccaggtaaatttcaaccctgaaaccccttCccccttcacctttgcatttctgattttaaacctctaaaactttcaccacatcttctgccatcagttgaccaactagaacagatctatctaatgctcatacagttgaacaaTtgaacagataccaattctcatgcaggatattaacttgacaactcaaaacttccactagataacaactaaaattacatatggaactatggtccaattccactgtAactgcactgtaactgtcaatgAattgtactgtaactgaaactataagactacttacagttatattttgctagcaccatacatggccccaacccgtatgcAaaaaattacagtgcatttgcactaaaattacatttgtaagaacaatagatataacatgtagtatgcccattccaaattgtgctaagagggaatcactaaaactgaacacatcaactcagttttgaatcactaatagtatatcatgccatgtagctaggtgcacAAaccactgtaaatcactaatagtatatcaaTtggtcagaaaaaaaagaaaaagaaaaccacactagTtattagcatggtgatatgggtcagagacaaCtaacctgcatgatggctaatagacaggatagttgagatcccttgagtaagaagcaagctaaaattAaagagaacAaaagcatgaattaggacataTtccacggtaaaaCtgagtcacataacaattggagtagggcacaatCcatatgaaaaaaaCtcaatccatatctacaaacatgccaggcAaaaaaaaacatgaacacctattttaggcacaaatcaactgaaatcaacacacaaataatactccaatactaagaTtgcacaagggattaaaaatgaaaaagaagttcagaaactAaaaacaacaccgcaccaaatcaaattcacattcacatatggtcaaattggaaaattacagtgctttgtaccttaaaTtacatttgtaaaaacaatatatacggcatgtaagtgcactgtaagtttagtacAattgcactgtaaaaTttgataacttcaatatgttaacttcaaaaTttcataaattctccatcAaacagtaatgcatatacagaTtttacatcaaacatgataggaacacatgtaatgctcAaaaacaaacaatcaagatttacTtaaggtaataaacacatttatattaacactaataatataaaaACctttgccatcAaatattaaagaaaaacAcctcaaaactttgcacatcatcagacaagaagtttaataaatctttttcacaaatagtgaataattttcttgtctgatgacgtgcaaaaatttgatttgcttaattcaaaaattatttatcatcatttggcaaaaagagttgattgcataaagaacactagattatgaaaatttggtgcatgtcctatgtaaatAaatatctaatacttaacaatctagtaagatgattttAaaaaacatgtatactaatttggtgcatattccttgaatgttgcaggaacaaaatttgctgaaccagttcaggTtggctgcatggacaaaatagttacataaatactatactatgctagacAaaaagattcatcacatcaggtcatattaaaaatagcactattcagaagttaaagtttaaaagAAaaaaacaaCttacagtcaaaacttgctacaacttacagtcaaaacTtgctacaacttacagtcaaaacttgctaaaattacaactgtaactgtagttcatgaagaaTgtattggactgtaactatagtgcaataaatatggaactagaacagatatatctaaatacgccccaattctcgtagaggaaacttcacaaaACcAaaaattacagtagataacacctaaaattacatatgtaactatggcctaattccactttaactgcactgtaagtggtatacaaTtgtactgtaagaccactgtaaatgtgataattgatgaagaatatacagggattgtatggaatatagaattcagtaaggacaacacattacatgtttctactgtaaCtacaTtgccttaatttttgcagggttaaagaatgagacacaaaaagacaaagacatcaataaacaaggaaaaatacaggcacagattcaagtaatgaaagaaattgctggtaagtaatttatggtcaacaaaattttaaattacaaagataTtataTtgtaatgcttttTAaatattaatgcaggattaaagccagatggagaatgtagtcagaaaaaaattctttcagaaacaagTtgatacagaaatcaccaatttcaagcaacatacaggtaacaattaaattctacgaagAatagaataaaaTttattttgaaaaacactgcttgcagcTAtaaaaaatgactagggcagcaatcaaactaaggggcacataaaagtccgaacttacaaaaacatcaaacaaatttaattctccaggcatgccccaacaaatgaatgatgacaggatgAaaatatctaaaaaaactaacattctattataaattacaatacaaaagtactaaaattacgactgtaattAatcagtacttgaactgtaactgactgtaagtggtataaaatataactgtaactgattgtaTttttttttgcaggtacaaggaagcgtgaaagtgaagaagggggaataaatgcaGgggagaCaatgagaagaaaatttcaaaaaaCtgggcTtgaagaaaTCaaaagagacatacAaatatcaggttataTtattgagaaggaaaattttaacagaaaaaaaaatgacttacagtcAaaacttgcaaaacttacaactgtaactatagttgttgtgtactgtaaccttatgatgcttatttatttattcaattacaggatcaaatcaaTtgcaggagattgacaaaaaagaatattcaatcaggacaaaatgctagaggaggaacagaaacaccaaatgcaacaagctatggagcacaaatactatacaaccagtactcattgcttaatgaagatggaagacttgtaagtacaaaattcacaatattataaaaataatgccaatacttctgatataacagaaaacaagggaaatttacagatggaggcaggaaagatgagctacactaatctcatgcaacAaataattcagagtccaaGagtgaccatgcaaacaaatgaggtaagcatAttttaatcagaTTtcaattgtactagaaaaagaaaaatgaaagaaaaactaattgcaatctAaaatgaaatgtgcaggAaggaatagaggcAtatacaaatctacttcaaacacccGtcGcatttgatgtgagaacttaacttacaaccataaatgaagaacaaaaatgtcaaaatttataagtcattactaacagTttatAttttgccattgcagaaTtctatGattttgacaacaagcaggTtttctccacaagaaacagatcagcaagatgggttttatcaacaacaGatttctacaacagaacgcatctatcAAgaatttgatgcaatatacaataacaacaacatgactacatggagtgaggtaacaTtttgaacagtgaaataaatacactaaccGgattattacttacaaatgacaaacaatttAaaaaaattatgcagagatcatcagAaagagatatAaaagagTtgtaTgaatccaaaaacaaccatttcaaaagacaggtacgttacttttgacaaacattcatAaaataaaatcataaaaacatgtgatagtaTaattgaaacataacaaataagaaaTttgcaggtgAATgggacgacaatggcaatgcagagtaatgagcatccaaacgaagaggatatacaacaaaaTtcaagaaatgagaatggacaggtaaacaagagtgattcatatattgacattgagattacaaaatagattagtttactaaaatttcatactaatcaattcatatAtttttttcagataaacaGtggacaagtgaatgaagaaaTaacagaagttagaaatgacacagaaggtgcacAaaaagtccaaaataactgtgaacaaagtactataacagctagtaatgaagtaagcagttcaagaagccacacaactggaggggacataaatgaggaagacataaacaatttcttggatAatgaataggAaatcaatgaagtaattgacaaaaggcacatacctgaagttggaatggagttcagatcagataaggaggctcatggattcttcaacTtttatgcatacctagttgggttctcaattgTaaatacacaccaTtacaaGacAacaagcaagAaaatgaatggtgaGattactagttatacatatcagtgctacagatatgggaaaaatgaggaagatgggaagAaaaagaagaaaacaacagaacaaaggaatacaaatgtgataaacagAactgactacaagtgtgtgatggtaataaaagaggaatacAaatgtgataaatagaaaactgactacaagtgtgtgatggtaataaaagaggaatacaaatgtgatAaacagaactgactacaagtgtgtgatggtaataaaagaggtacagaatatttggaaaatatcaagactgAacctagaacacaatcacacactaagccCaaACaGagaaGcaaaattcctaaagtcacacaagaatatgacagtagaagAaaagaggttgatcagAactctcaagGAgtgcaacatacctacaagaagcAtgataGtcatactgtcatttctccaagggggattgtcagcactgctatacaacaaaaaagatgtcagcaatgtgacaacatcaatcaattcagaaacAaaaaacagtgatatgaagctcatggagtatctattaacaaagaagccgaaaacccaggattctactacgagttgttgctagatgagaataataaggtgaagagtatgttttggactgatggtagatccaCtcaactatatgaggagtatggtgaatttgttagTttcgacaccatgtacaaaactaacaagtacaacctaccaTttgctccttttgttGgggttacaggtcatggcagcatatgcatttttgcgtgtgcatttttaGgagatgaaactatGgaaactttcaaatgggTttttgaggcattcctaacagctatgggaggaaaacatcctgagacaatcataactgaccaagacttggcaatgaaatcagcaatagaaaaagtatttccggatacaaaacacacgaattgcttgttccatattatgaagaagtggagagaaaggacaggaaacacattttcagaaaagaaaaATtaagatctctacaatgaaTtttatgatattgttcacaactgcttgacaagagttgagtttgaaacattgtggcctcaaatgattgAaaagtatggtttgcAaaacatcaaatacctacagacaatgtggagaacaagggaaaactatataccattgtactttaaattagatttttgcccatttattcacagtacagcactaagtgaggtgacaaatgcaaggttcaaaaggggTgtgggcccaacacacagtgtaatgagtttccttaaagaatttgagataatcaatgacacaatctttgatacagaattttgcaaagatcatcagtccagaacaaagaagcctaagacactatggtcaagctacaagattgaactacaagcttcagagatgtacaacttgagAattttcaaaaaatttcaagatgagttgcaggAaacactgaatcaagAaattgcagttatagaacatGGgaaaacatatgaagtatatgcagctgaaaacctaacaaaACcggaattcagacagaGaaaatatgtgatcataacagacttagcacaatagaactatgtgtgcatatgtgcaaagccatatcctgaaagtgatgctatttctAaaaataagcaaaattcctgaaaagtacataattgaaaggtggaagaaaaaggagagaaaatgcatagcaagAatagagaaaccagctagtgatgAaaacagttcagttcttaggttcaatgtcctctctagaagaaTggctgacatggcttcaaaagcatcaaagagtaaagacacttacctgtatatgctagatcagatGgacaGgttggatggaaatttggacttgttgattgaacaggcacctgaaaatctgcaacaaaatAatcaaggcagtacaacAaaagagagtaatggggaataagaaacagaagAaacaatgaatgaacaagaagatatcgaagaccctaatttagcaaatacaaaaggcaaaaaaatcagctagaacAaaagcaattgtagagaagcttAaagagattccaaaaaggcattgcacacgatgtggaagaacaaatcatacaATagagacatgcccattgatggaagacacatacattatgcaaagtcagcaaaaaacagccaagacaagtaagaaaaaacaatttctttgaaataaattaaacTtgtacAaaaatattatgtGttaccaaaaatgtacttataaggatttaacattgtcagggactattgagaagcaaaggaagcctggaacaagAaagaaacagggagaagatcAaactggagaatcgTcaagcaaaagtaagaaacAaaaaacattcacctaa

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CDS seq

atggacagcgatgagaaggAaaaaaaaagagagaacaaggagacTAtcaccAaaaaaatggagatcaagaggatcaagcaaacaagagAaaacataccagggttaaagaatgagacacaaaaagacaaagacatcaataaacaaggaaaaatacaggcacagattcaagtaatgaaagaaattgctggtacaaggaagcgtgaaagtgaagaagggggaataaatgcaGgggagaCaatgagaagaaaatttcaaaaaaCtgggcTtgaagaaaTCaaaagagacatacAaatatcagaaaacaagggaaatttacagatggaggcaggaaagatgagctacactaatctcatgcaacAaataattcagagtccaaGagtgaccatgcaaacaaatgaggAaggaatagaggcAtatacaaatctacttcaaacacccGtcGcatttgataaTtctatGattttgacaacaagcaggTtttctccacaagaaacagatcagcaagatgggttttatcaacaacaGatttctacaacagaacgcatctatcAAgaatttgatgcaatatacaataacaacaacatgactacatggagtgagagatcatcagAaagagatatAaaagagTtgtaTgaatccaaaaacaaccatttcaaaagacaggtgAATgggacgacaatggcaatgcagagtaatgagcatccaaacgaagaggatatacaacaaaaTtcaagaaatgagaatggacagataaacaGtggacaagtgaatgaagaaaTaacagaagttagaaatgacacagaaggtgcacAaaaagtccaaaataactgtgaacaaagtactataacagctagtaatgaagAaatcaatgaagtaattgacaaaaggcacatacctgaagttggaatggagttcagatcagataaggaggctcatggattcttcaacTtttatgcatacctagttgggttctcaattgTaaatacacaccaTtacaaGacAacaagcaagAaaatgaatggtgaGattactagttatacatatcagtgctacagatatgggaaaaatgaggaagatgggaagAaaaagaagaaaacaacagaacaaaggaatacaaatgtgataaacagAactgactacaagtgtgtgatgaggaatacaaatgtgatAaacagaactgactacaagtgtgtgatggtaataaaagaggtacagaatatttggaaaatatcaagactgAacctagaacacaatcacacactaagccCaaACaGagaaGcaaaattcctaaagtcacacaagaatatgacagtagaagAaaagaggttgatcagAactctcaagGAgtgcaacatacctacaagaagcAtgataGtcatactgtcatttctccaagggggattagttgagtttgaaacattgtggcctcaaatgattgAaaagtatggtttgcAaaacatcaaatacctacagacaatgtggagaacaagggaaaactatataccattgtactttaaattagatttttgcccatttattcacagtacagcactaagtgaggtgacaaatgcaaggttcaaaaggggTgtgggcccaacacacagtgtaatgagtttccttaaagaatttgagataatcaatgacacaatctttgatacagaattttgcaaagatcatcagtccagaacaaagaagcctaagacactatggtcaagctacaagattgaactacaagcttcagagatgtacaacttgagAattttcaaaaaatttcaagatgagttgcaggAaacactgaatcaagAaattgcagttatagaacatGGgaaaacatatgaagtatatgcagctgaaaacctaacaaaACcggaattcagacagaGaaaatatgtgatcataacagacttagcacaatag

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Protein seq

MDSDEKEKKRENKETITKKMEIKRIKQTRENIPGLKNETQKDKDINKQGKIQAQIQVMKEIAGTRKRESEEGGINAGETMRRKFQKTGLEEIKRDIQISENKGNLQMEAGKMSYTNLMQQIIQSPRVTMQTNEEGIEAYTNLLQTPVAFDNSMILTTSRFSPQETDQQDGFYQQQISTTERIYQEFDAIYNNNNMTTWSERSSERDIKELYESKNNHFKRQVNGTTMAMQSNEHPNEEDIQQNSRNENGQINSGQVNEEITEVRNDTEGAQKVQNNCEQSTITASNEEINEVIDKRHIPEVGMEFRSDKEAHGFFNFYAYLVGFSIVNTHHYKTTSKKMNGEITSYTYQCYRYGKNEEDGKKKKKTTEQRNTNVINRTDYKCVMRNTNVINRTDYKCVMVIKEVQNIWKISRLNLEHNHTLSPNREAKFLKSHKNMTVEEKRLIRTLKECNIPTRSMIVILSFLQGGLVEFETLWPQMIEKYGLQNIKYLQTMWRTRENYIPLYFKLDFCPFIHSTALSEVTNARFKRGVGPTHSVMSFLKEFEIINDTIFDTEFCKDHQSRTKKPKTLWSSYKIELQASEMYNLRIFKKFQDELQETLNQEIAVIEHGKTYEVYAAENLTKPEFRQRKYVIITDLAQ

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_05g0008900 OsLaMu_05g0008900.02 Chr05 8819465 8820236 + NAM
CDS seq

atgtgtgcatatgtgcaaagccatatcctgaaagtgatgctatttctAaaaataagcaaaattcctgaaaagtacataattgaaaggtggaagaaaaaggagagaaaatgcatagcaagAatagagaaaccagctagtgatgAaaacagttcagttcttaggttcaatgtcctctctagaagaaTggctgacatggcttcaaaagcatcaaagagtaaagacacttacctgtatatgctagatcagatGgacaGgttggatggaaatttggacttgttgattgaacaggcacctgaaaatctgcaacaaaatAatcaaggcagtacaacAaaagagactagaacAaaagcaattgtagagaagcttAaagagattccaaaaaggcattgcacacgatgtggaagaacaaatcatacaATagagacatgcccattgatggaagacacatacattatgcaaagtcagcaaaaaacagccaagacaaggactattgagaagcaaaggaagcctggaacaagAaagaaacagggagaagatcAaactggagaatcgTcaagcaaaagtaagaaacAaaaaacattcacctaa

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Protein seq

MCAYVQSHILKVMLFLKISKIPEKYIIERWKKKERKCIARIEKPASDENSSVLRFNVLSRRMADMASKASKSKDTYLYMLDQMDRLDGNLDLLIEQAPENLQQNNQGSTTKETRTKAIVEKLKEIPKRHCTRCGRTNHTIETCPLMEDTYIMQSQQKTAKTRTIEKQRKPGTRKKQGEDQTGESSSKSKKQKTFT

Gene Transcript Chromosome Start End Strand Source
OsLaMu_05g0008900 OsLaMu_05g0008900.01 Chr05 8813466 8819460 + NAM
CDS seq

atggacagcgatgagaaggAaaaaaaaagagagaacaaggagacTAtcaccAaaaaaatggagatcaagaggatcaagcaaacaagagAaaacataccagggttaaagaatgagacacaaaaagacaaagacatcaataaacaaggaaaaatacaggcacagattcaagtaatgaaagaaattgctggtacaaggaagcgtgaaagtgaagaagggggaataaatgcaGgggagaCaatgagaagaaaatttcaaaaaaCtgggcTtgaagaaaTCaaaagagacatacAaatatcagaaaacaagggaaatttacagatggaggcaggaaagatgagctacactaatctcatgcaacAaataattcagagtccaaGagtgaccatgcaaacaaatgaggAaggaatagaggcAtatacaaatctacttcaaacacccGtcGcatttgataaTtctatGattttgacaacaagcaggTtttctccacaagaaacagatcagcaagatgggttttatcaacaacaGatttctacaacagaacgcatctatcAAgaatttgatgcaatatacaataacaacaacatgactacatggagtgagagatcatcagAaagagatatAaaagagTtgtaTgaatccaaaaacaaccatttcaaaagacaggtgAATgggacgacaatggcaatgcagagtaatgagcatccaaacgaagaggatatacaacaaaaTtcaagaaatgagaatggacagataaacaGtggacaagtgaatgaagaaaTaacagaagttagaaatgacacagaaggtgcacAaaaagtccaaaataactgtgaacaaagtactataacagctagtaatgaagAaatcaatgaagtaattgacaaaaggcacatacctgaagttggaatggagttcagatcagataaggaggctcatggattcttcaacTtttatgcatacctagttgggttctcaattgTaaatacacaccaTtacaaGacAacaagcaagAaaatgaatggtgaGattactagttatacatatcagtgctacagatatgggaaaaatgaggaagatgggaagAaaaagaagaaaacaacagaacaaaggaatacaaatgtgataaacagAactgactacaagtgtgtgatgaggaatacaaatgtgatAaacagaactgactacaagtgtgtgatggtaataaaagaggtacagaatatttggaaaatatcaagactgAacctagaacacaatcacacactaagccCaaACaGagaaGcaaaattcctaaagtcacacaagaatatgacagtagaagAaaagaggttgatcagAactctcaagGAgtgcaacatacctacaagaagcAtgataGtcatactgtcatttctccaagggggattagttgagtttgaaacattgtggcctcaaatgattgAaaagtatggtttgcAaaacatcaaatacctacagacaatgtggagaacaagggaaaactatataccattgtactttaaattagatttttgcccatttattcacagtacagcactaagtgaggtgacaaatgcaaggttcaaaaggggTgtgggcccaacacacagtgtaatgagtttccttaaagaatttgagataatcaatgacacaatctttgatacagaattttgcaaagatcatcagtccagaacaaagaagcctaagacactatggtcaagctacaagattgaactacaagcttcagagatgtacaacttgagAattttcaaaaaatttcaagatgagttgcaggAaacactgaatcaagAaattgcagttatagaacatGGgaaaacatatgaagtatatgcagctgaaaacctaacaaaACcggaattcagacagaGaaaatatgtgatcataacagacttagcacaatag

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Protein seq

MDSDEKEKKRENKETITKKMEIKRIKQTRENIPGLKNETQKDKDINKQGKIQAQIQVMKEIAGTRKRESEEGGINAGETMRRKFQKTGLEEIKRDIQISENKGNLQMEAGKMSYTNLMQQIIQSPRVTMQTNEEGIEAYTNLLQTPVAFDNSMILTTSRFSPQETDQQDGFYQQQISTTERIYQEFDAIYNNNNMTTWSERSSERDIKELYESKNNHFKRQVNGTTMAMQSNEHPNEEDIQQNSRNENGQINSGQVNEEITEVRNDTEGAQKVQNNCEQSTITASNEEINEVIDKRHIPEVGMEFRSDKEAHGFFNFYAYLVGFSIVNTHHYKTTSKKMNGEITSYTYQCYRYGKNEEDGKKKKKTTEQRNTNVINRTDYKCVMRNTNVINRTDYKCVMVIKEVQNIWKISRLNLEHNHTLSPNREAKFLKSHKNMTVEEKRLIRTLKECNIPTRSMIVILSFLQGGLVEFETLWPQMIEKYGLQNIKYLQTMWRTRENYIPLYFKLDFCPFIHSTALSEVTNARFKRGVGPTHSVMSFLKEFEIINDTIFDTEFCKDHQSRTKKPKTLWSSYKIELQASEMYNLRIFKKFQDELQETLNQEIAVIEHGKTYEVYAAENLTKPEFRQRKYVIITDLAQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g15930 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0008930 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0008970 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0008860 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0008940 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0009000 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0135900 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0008860 RBH 0.0 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0134800 RBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0008840 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0008790 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0008890 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0008960 RBH 0.0 0.137214 1.223758
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G008750 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0009020 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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