Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0007700 | OGI:05019850 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:7104064-7109362 | ||||||||
| Gene Symbol | Z15, OsRLCK181, RLCK181, OsZ15 | ||||||||||
| DNA seq | ggtgaactcttgtcaggcaactcaaccctgaataagtatggacagtatattcaaaagttaattagctcaattcatttgaattacataggcaaacgggtgggtggtGgaacacatccataacataatacttatgaaagaatcaacaattgtagctaccaaaagctatacttcggtcaaacttacggttcatcgcatcgcacgcaagtcagcaactttggtcatacgaactcagatggactttacagattgaaacaatcaaaatgttAaaagaggaaaaacaaagatttccctcatgaggctccgctgtatcctgagctgtagccactgtagccgcctctcttggttgtcctgctctcgacttcctgggtttgttggccctcgctgcttgatgcagagggtatctggccatactcgctggttggtgcgctgtattgactgctcgtatcattattgttggtaaaagccatcttcctgaacttcttcatgtcctcgttgtattggccagaatcatagtcagagctgctgtacgatccaaaatagcggctgtgaccaggccgaacaccttcattaagatcctccaaagacacgtcaccttccaaagcccggacaacctgataccatatcagatatgagacattagaccacaaactgaatccatgcatatgccagccatgtcaccacagtgcttctcactgttgaataaatatttactgatgccaatattctggttcatgttaagcatctagttgcactccgtgctcttttatctggcagtagaagagatgtattgcaagttacctggctcatgcgtgggcgacgacgagcggaatggcgtacacatgcagctgcacaagcaatcattctcgccatctcattgggattgaaatccttcccAagccgaggatctactaactcctcgtagttaccattctcaagtgcttgcatcagtaaaggccttgcctgcacgtcgtcatatatattactctcaagatgtttgtattttaacagtttcgtgaagacacagaatgacgtaataacaagttaagtcatggagatatagttagtggtgctgataacaagcggtgatcgcaactagtcaaaagcaacaccaacttggactagggtactattattaaagcatgcatggaaacatccatactacacacgaaaatagaggtatgtatatgcagttatgctcgcatagcacgctatatgcctatatccaaagctgaagggataagtcatcattagtgactacacacaattattcaggtggcacattgttcaaaggcatacatttaaaatatAaaccataaaagtccagttccattcttttattAAaaagatgatttgtttaaacagttaataggcatgttataaagctatcaagtacctacccagtcaaccaagctgtcatccatatatgtttgacttgtatcaactggccgacgaccagttattaactcaagaagcataactccataggagaagacatctgatttctcagtgagcttgccagaagatgcgtactctggtgctagatatctgagacaagtaaaatgaacaattggacattagaaaaaactccgattatttctatgtaggaagttgaatgctgaaatagttaaactgctagatagatgtcaccaaattttaaaaccaacaggaacatgctagaaaatcgaggcaaaaaaatatgttgaagtgttttatcaggaagaataccagccatgtgacctagtttaaactgggacagaaagggggtccatatcttttttttttcaatcatcataaagtaacaccaatgttgcatgtctacctAaaaatgtaactccaatgtaaatagaacattgctacaacaagaatatatacatacccaaaagtgcccattactcttgtcgaaacatgagtgttattatcactggtgaacttagcaagtccaaaatcagcaacctgtgcatagggtacacgtcataaatatatgatataaaaaaatcagaaaagcaatacaaagaaaaatgaagtattgaaaactataaatgcacagcctcagagAaaaaaaaagacaataagtgaagttttctatacaacagcaatatacaaaagtacagtgtcagctttggagttgacagcaactccatttcggtaattctatgcagcaaatccaaattactatggcatgttttgaaccgacaaacacaaccagataatcacatggcatgttcattggcaaaaatctatatcctcagcatgaaccattctatgtcaacgctgtgaatgcaggggAaagcaagagtataacaaaccttagattcaaacttaaaatcaagaagaatgtttgacgccttaatatcacgatggatgatcttaggatggcctgtcatttaaaacaaatattaatacctgtttgccactacacttttttgctaatttggaaaacaatggtgagaatcttagttcagataaagttataaacttacagtcttcatgaagataagctaaaccctttgcagctcccaaagcaatctttagtcttgtgggccactccattgttggtcggccttttcctacggatggtaaatataggaattaataatgcataacaaagcataaaaaatattgatacaggaattaacttgtacaatgcatgaccgaactttcaacaaattaccAaaagagagaattaattcatggccctatgagaattgagaaggcaacttcttaagcactaccatctctatgaagcaaagcacttcatccaaaggattcagtggcattgaatatattttaaggaaatggtggcccAaaaatgatggtggctagaaatagttaagtggtgatatttctgactgaaagtagtttagcctgctaatttaattttattactcgcaaaggttatttatccctgtttactatttccataaattcaaagttctcctatggtagctcagaagtttatccagtaagaaggaaattgaaaccataaagttcagacAaacagttctgacagtcctctagaataaagcaaaatcccttgctctctaaaagtgtatttactattcacttagctacattgtactggatagcacgatagctgatagctaactagtctcagtacatcctccattactatatgtgttagtcgatcatctatgtttttgtcgtgagatctttcagacAaaagtaactgagcaaaataataaaatataagtaatcacagataaagaagcaaacatatgaacaaagcataccgtgcaagtggaattccaatgtgttgttggggacaaactcatagacaagcagtctcttgcccccagaaatgcaataaccaaccaaggagacaagatgtttgtgatgtactctgctgataatctcaacctccgcctggaattcacgctctccctggccacttccaactttcaattgtttcacagcaatctcttttccagtaggcagcactcctctatggacatagccaaaaccaccttgtccaaggagattagcatcagagaatccatccgttgccctcaacagctcttcataagtaaatgtgctctttgagaaaccaagggcagcgccaggggatggtggtggtaggatctctccacctgagtaagagccagacccaccgctgctgtttatcatagcagctggaggggtcgatggtggctgtggaggacggtttgcatacgctggcggaggtgatgggtgcatcttcactacatgctcaggcggaggtggtggggcattttgctgccaactttgctggtatgatccaccatatgcatcctctgcaataagatgaaacagcattagaaaaagtatgtcaccatgttactagtaacgtgtaatgtgtgaacacatcaaaacgttcagagttcaaacggctttcatggcacagcatgtaccaactactctttttctaggaaaaaaaaggcaggctattccaaacatactacaacattttgatattgacagcaggcatgacatcatctcatcctacattcatccatcatcacctagttccattggataaccaatcacgaattaatttactgaatgcaacgaaagacacacgtgaaaaatcctcagtcctggcaattaagaaagaaatcctcagtcctggcatgaagaataaatcctcagttgtggctattaagaataaatcttcagttctggcttttaatacgaaatccaggaccagctctattgaagtcgaaattttcgtctgtacatactaaaactaatcctatgtagccgccatgaacctgtcaagttgtcaactacacagcacatgcgtatagcgtcctagtcagtgccaaactgccacgcgagaaagaaagatccagcgccaccaaaaattgcgggcaaggaggaGaattgaagctgatagcaacgtgaccaaaagctgctgctatcgcacgctaaccgcacactagatctagatctggagagcgacagctattgatcggaccagcagagagagatcgatctcggtatctcacccttgtactgcggcggcggcggcgggtacacgtagtgctgctgcggcggcggcgggcgcctccgcttcttccggaggcagcagaggcagatgaagctggcgagcagcagcagcacgaggccaccgacggcgacgcccaccaccgtcgccgtggacaccccggagccacctccccccgacgagcgcgaggcgggcgatttcggcgaggggtgggtgctcggcgtcgacggcgacctccctccaccgcccccggacgacggcggcgagttccccccgccgccagatgacggcGgggagggcgtatccgagggcggcgcgggtgtcgcaggaccacccgaggccgacggcggcgacgccgagggcaccgcgggcgtggacgccggtgctGggggcgacgcggagggaaccgccggcggcgtgccggccgatggtggcgccttcgccggcgcgggcggggacggcgcggacggggtggcaggcggcggcgcggagggcgtcgtcggcgtcgtgggcgtcggcgtcggcggcggcgtcgacggggtggcgggtggtggggtcgtgttgttcgccgctggcgccgccggcggcgaggtcggcgccggcgcggcggtcggcgacgacatcgcgcaccccgctccgcggtgcccgaggcggcggagctagggtttgggtgctccctccctccctcctcggctttgcttagcgcgtaagcttgaggggatcggagaagagaagcgagagagagagagtaaattggaaggagcagtagagtagagtggagtattcttcttcttc
More
|
||||||||||
| CDS seq | atgtcgtcgccgaccgccgcgccggcgccgacctcgccgccggcggcgccagcggcgaacaacacgaccccaccacccgccaccccgtcgacgccgccgccgacgccgacgcccacgacgccgacgacgccctccgcgccgccgcctgccaccccgtccgcgccgtccccgcccgcgccggcgaaggcgccaccatcggccggcacgccgccggcggttccctccgcgtcgccccCagcaccggcgtccacgcccgcggtgccctcggcgtcgccgccgtcggcctcgggtggtcctgcgacacccgcgccgccctcggatacgccctcccCgccgtcatctggcggcggggggaactcgccgccgtcgtccgggggcggtggagggaggtcgccgtcgacgccgagcacccacccctcgccgaaatcgcccgcctcgcgctcgtcggggggaggtggctccggggtgtccacggcgacggtggtgggcgtcgccgtcggtggcctcgtgctgctgctgctcgccagcttcatctgcctctgctgcctccggaagaagcggaggcgcccgccgccgccgcagcagcactacgtgtacccgccgccgccgccgcagtacaaggaggatgcatatggtggatcataccagcaaagttggcagcaaaatgccccaccacctccgcctgagcatgtagtgaagatgcacccatcacctccgccagcgtatgcaaaccgtcctccacagccaccatcgacccctccagctgctatgataaacagcagcggtgggtctggctcttactcaggtggagagatcctaccaccaccatcccctggcgctgcccttggtttctcaaagagcacatttacttatgaagagctgttgagggcaacggatggattctctgatgctaatctccttggacaaggtggttttggctatgtccatagaggagtgctgcctactggaaaagagattgctgtgaaacaattgaaagttggaagtggccagggagagcgtgaattccaggcggaggttgagattatcagcagagtacatcacaaacatcttgtctccttggttggttattgcatttctgggggcaagagactgcttgtctatgagtttgtccccaacaacacattggaattccacttgcacggaaaaggccgaccaacaatggagtggcccacaagactaaagattgctttgggagctgcaaagggtttagcttatcttcatgaagactgccatcctaagatcatccatcgtgatattaaggcgtcaaacattcttcttgattttaagtttgaatctaaggttgctgattttggacttgctaagttcaccagtgataataacactcatgtttcgacaagagtaatgggcacttttggatatctagcaccagagtacgcatcttctggcaagctcactgagaaatcagatgtcttctcctatggagttatgcttcttgagttaataactggtcgtcggccagttgatacaagtcaaacatatatggatgacagcttggttgactgggcaaggcctttactgatgcaagcacttgagaatggtaactacgaggagttagtagatcctcggctTgggaaggatttcaatcccaatgagatggcgagaatgattgcttgtgcagctgcatgtgtacgccattccgctcgtcgtcgcccacgcatgagccaggttgtccgggctttggaaggtgacgtgtctttggaggatcttaatgaaggtgttcggcctggtcacagccgctattttggatcgtacagcagctctgactatgattctggccaatacaacgaggacatgaagaagttcaggaagatggcttttaccaacaataatgatacgagcagtcaatacagcgcaccaaccagcgagtatggccagataccctctgcatcaagcagcgagggccaacaaacccaggaagtcgagagcaggacaaccaagagaggcggctacagtggctacagctcaggatacagcggagcctcatga
More
|
||||||||||
| Protein seq | MSSPTAAPAPTSPPAAPAANNTTPPPATPSTPPPTPTPTTPTTPSAPPPATPSAPSPPAPAKAPPSAGTPPAVPSASPPAPASTPAVPSASPPSASGGPATPAPPSDTPSPPSSGGGGNSPPSSGGGGGRSPSTPSTHPSPKSPASRSSGGGGSGVSTATVVGVAVGGLVLLLLASFICLCCLRKKRRRPPPPQQHYVYPPPPPQYKEDAYGGSYQQSWQQNAPPPPPEHVVKMHPSPPPAYANRPPQPPSTPPAAMINSSGGSGSYSGGEILPPPSPGAALGFSKSTFTYEELLRATDGFSDANLLGQGGFGYVHRGVLPTGKEIAVKQLKVGSGQGEREFQAEVEIISRVHHKHLVSLVGYCISGGKRLLVYEFVPNNTLEFHLHGKGRPTMEWPTRLKIALGAAKGLAYLHEDCHPKIIHRDIKASNILLDFKFESKVADFGLAKFTSDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDTSQTYMDDSLVDWARPLLMQALENGNYEELVDPRLGKDFNPNEMARMIACAAACVRHSARRRPRMSQVVRALEGDVSLEDLNEGVRPGHSRYFGSYSSSDYDSGQYNEDMKKFRKMAFTNNNDTSSQYSAPTSEYGQIPSASSSEGQQTQEVESRTTKRGGYSGYSSGYSGAS |
||||||||||
| Function | Proline-rich receptor-like protein kinase PERK1 [UniProtKB/Swiss-Prot:Q9LV48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0007700 | OsLaMu_05g0007700.01 | Chr05 | 7104064 | 7109362 | - | NAM | ||
| CDS seq | atgtcgtcgccgaccgccgcgccggcgccgacctcgccgccggcggcgccagcggcgaacaacacgaccccaccacccgccaccccgtcgacgccgccgccgacgccgacgcccacgacgccgacgacgccctccgcgccgccgcctgccaccccgtccgcgccgtccccgcccgcgccggcgaaggcgccaccatcggccggcacgccgccggcggttccctccgcgtcgccccCagcaccggcgtccacgcccgcggtgccctcggcgtcgccgccgtcggcctcgggtggtcctgcgacacccgcgccgccctcggatacgccctcccCgccgtcatctggcggcggggggaactcgccgccgtcgtccgggggcggtggagggaggtcgccgtcgacgccgagcacccacccctcgccgaaatcgcccgcctcgcgctcgtcggggggaggtggctccggggtgtccacggcgacggtggtgggcgtcgccgtcggtggcctcgtgctgctgctgctcgccagcttcatctgcctctgctgcctccggaagaagcggaggcgcccgccgccgccgcagcagcactacgtgtacccgccgccgccgccgcagtacaaggaggatgcatatggtggatcataccagcaaagttggcagcaaaatgccccaccacctccgcctgagcatgtagtgaagatgcacccatcacctccgccagcgtatgcaaaccgtcctccacagccaccatcgacccctccagctgctatgataaacagcagcggtgggtctggctcttactcaggtggagagatcctaccaccaccatcccctggcgctgcccttggtttctcaaagagcacatttacttatgaagagctgttgagggcaacggatggattctctgatgctaatctccttggacaaggtggttttggctatgtccatagaggagtgctgcctactggaaaagagattgctgtgaaacaattgaaagttggaagtggccagggagagcgtgaattccaggcggaggttgagattatcagcagagtacatcacaaacatcttgtctccttggttggttattgcatttctgggggcaagagactgcttgtctatgagtttgtccccaacaacacattggaattccacttgcacggaaaaggccgaccaacaatggagtggcccacaagactaaagattgctttgggagctgcaaagggtttagcttatcttcatgaagactgccatcctaagatcatccatcgtgatattaaggcgtcaaacattcttcttgattttaagtttgaatctaaggttgctgattttggacttgctaagttcaccagtgataataacactcatgtttcgacaagagtaatgggcacttttggatatctagcaccagagtacgcatcttctggcaagctcactgagaaatcagatgtcttctcctatggagttatgcttcttgagttaataactggtcgtcggccagttgatacaagtcaaacatatatggatgacagcttggttgactgggcaaggcctttactgatgcaagcacttgagaatggtaactacgaggagttagtagatcctcggctTgggaaggatttcaatcccaatgagatggcgagaatgattgcttgtgcagctgcatgtgtacgccattccgctcgtcgtcgcccacgcatgagccaggttgtccgggctttggaaggtgacgtgtctttggaggatcttaatgaaggtgttcggcctggtcacagccgctattttggatcgtacagcagctctgactatgattctggccaatacaacgaggacatgaagaagttcaggaagatggcttttaccaacaataatgatacgagcagtcaatacagcgcaccaaccagcgagtatggccagataccctctgcatcaagcagcgagggccaacaaacccaggaagtcgagagcaggacaaccaagagaggcggctacagtggctacagctcaggatacagcggagcctcatga
More
|
|||||||
| Protein seq | MSSPTAAPAPTSPPAAPAANNTTPPPATPSTPPPTPTPTTPTTPSAPPPATPSAPSPPAPAKAPPSAGTPPAVPSASPPAPASTPAVPSASPPSASGGPATPAPPSDTPSPPSSGGGGNSPPSSGGGGGRSPSTPSTHPSPKSPASRSSGGGGSGVSTATVVGVAVGGLVLLLLASFICLCCLRKKRRRPPPPQQHYVYPPPPPQYKEDAYGGSYQQSWQQNAPPPPPEHVVKMHPSPPPAYANRPPQPPSTPPAAMINSSGGSGSYSGGEILPPPSPGAALGFSKSTFTYEELLRATDGFSDANLLGQGGFGYVHRGVLPTGKEIAVKQLKVGSGQGEREFQAEVEIISRVHHKHLVSLVGYCISGGKRLLVYEFVPNNTLEFHLHGKGRPTMEWPTRLKIALGAAKGLAYLHEDCHPKIIHRDIKASNILLDFKFESKVADFGLAKFTSDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDTSQTYMDDSLVDWARPLLMQALENGNYEELVDPRLGKDFNPNEMARMIACAAACVRHSARRRPRMSQVVRALEGDVSLEDLNEGVRPGHSRYFGSYSSSDYDSGQYNEDMKKFRKMAFTNNNDTSSQYSAPTSEYGQIPSASSSEGQQTQEVESRTTKRGGYSGYSSGYSGAS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.336466 | 13.350722 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0218400 | RBH | 1.343664 | 1.674753 | 7.836624 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g12680 | RBH | 0.859772 | 1.065813 | 1.933119 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0218400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007690 | RBH | 0.188020 | 12.648508 | 11.911778 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007720 | RBH | 0.227174 | 5.996938 | 4.388616 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007610 | RBH | 0.673180 | 24.228249 | 12.907726 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007670 | RBH | 0.077005 | 0.923493 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007750 | RBH | 0.414426 | 37.760441 | 22.337900 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0110900 | RBH | 11.7603575 | 96.4956475 | 23.33039 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007620 | RBH | 0.130402 | 2.906744 | 1.755573 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0108800 | RBH | 18.4293085 | 77.896271 | 42.131481 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007650 | RBH | 0.047475 | 0.762962 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007570 | RBH | 0.513016 | 24.855932 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007670 | RBH | 0.946076 | 31.491325 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007730 | RBH | 0.072972 | 2.416214 | 1.631093 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G007470 | RBH | 0.0 | 13.045732 | 7.305929 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007720 | RBH | 0.000000 | 32.752167 | 12.523002 |
