Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0005760 | OGI:05014490 | 12/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:4964801-4967629 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaacaccttcctcgagctcgagCccttctccactcctctctttgaaatccccgacgatgccgattttgagtacacatccatgCTcgccgctgacgacttctccctcatggacggcgaCTttcttgctgaccagccgccggcgccggcggaggtggtggcaggcggaggtgatgccagtgggaagcggagtttccatgccaacgacggcgaggccatgtgtgtcgtgtcccggtcgtcTaagagaaggaagaaggcgccaacgaattcgaCctcgccgtccaaccgcgacggcagcggcggcggcggcggcggcgaggggaatgagccgacggcggaaaggcgaggtagccggcgggtgTgggtgcgggagcgtagcacggagtggtgggaccgcatgagggaCccggcggcttgcccggaggcggacttccggcgagccttccgcatgccgcgcgcggTgttcgacaagctctgcgacgacctggccgccgccgtcgccaaggtggacaccacgctccgctccgccatccccgtgccgcagcgcgtcgccgtctgcctctggcgcctcgccaccggcgacccactccgcgaggtgtcccgccgctttggcctcggcatctccacctgccacaacatcatcgtccaggtctgcgccgccatcaccgccgtcctcctcaccagggttgtccggtggccggactcccacgccgccgccgcgtccaggttccaggccttgtcttggatccctggagtcgtcggcgccgtgcacaccgagcacttccgcatcgtcgcgccgagggagcacgccggcaagtactacgaccaccgcctcaccggccggaacaacaaggccacctactccgtcgccatgcaggccgtcgtggacgccgacggcgccttcaccgacgtctgcatcggccaCcccggctcgctgtccgacgctgccatcctcgcgaagtcggctctgtacgcccggtgcgaggctgggcttctgctcggccacgacaagctcgggtggcaacagccgctgtggctcgtcggcggcgcgagctacccgctgacgagctggatgctggtgccgtacacgcagccgaaCctgacgtgggcgcaggacaggctcaacgcgcgggtggccgacgcgcgcgcggcggcggtgggtgcgttccggcggctcagggcgcggtggcagtgcctgcggcgcgccgaggtgaagctgccggagctagccaacatgctgggcgcctgctgcgtgctgcacaacctctgcgagcgcagcggccatgggctcgatgccgacctcctcgatctCctggacgacgagctcgtcgacgacggagtggtcgCcggtggcggcaatacagtgcgctcccccgccgccgaacaggtgagagacaggatcgcgcacggtctcctagaccaatacgtcgggaatgcttctttgagtggctagtggctactactagccaaccattaccggaagttataagcttccatcggaagacactgattgagccgaaatttcagaataattTGgacatttgtttagttaaacttgaagaacTtttgctaaacttacaataaagcattccttaaaatttcaggcgaaatagtttcatatagggtgggcctaaattcatgattaTtttaaagtattattaggattttgaaaccggtaacaacttcagagtttatgtggtactccctccttcatcataatatAatggaatccaaaatttttcaaattgatcatcataTaaccgcatggacacggattccatcggaatacaattaacgtggcatagtagaatgtgtgcatgttagggtgtaattggtatggtgttttaatcgatacatgcattgtgggagaatgtgtacatgatgttttgattgatgcgatttgaattatccttgatcttggtgcataaacatatataatgatcaTTttgagattgagggagtagTAttcatttttagagttaatttggctggttgctggtcaaaTtttgaaattttgTAttgagtaaaattcataaaactacaggtattttacacaaTttatcacAAaactatagttttaatagcttatttcacaaaaatacagatttagtgtctccgTttatcacaaaactacaagtactttatataatctatcacaaaactatagaTttaagaaattgtttcacaaaactatagatttattgtattcgtttatcacagaaatacacaTttagtttcTtcatttatcacAaaattacagttttagtgtctccattatcccAaaactacggGTtttaaccatgctaaaaCccgtagTtttgtgataatagagacactaaacctgtagttttgtgataaatAaagatattaaatctgtagtattatgaaacaagTtttaaaatttgtagttttgTgttaaacgaagaaactaatccgtaTttttgtgaaacaagttcttaaatatgtagttttgtgatagattgtacaaagtatctatagttttatgaaattaactcTttacaTtttcatctaaaataaccggtggtaatcagcttgttatctctgatatatatCcttatgagcaagcTttcatcaaactgtactgggcaatagctgcaccgatgaggataaaaagtgccggtttagtaaccaacacctcttaggttcaagaatAaaaaaaagccgtCtcggtatatcagtttgaatcgagccgatgcgttgagCcaagaattacgtacataaaattacaaatacgatgacaaTgaatcaaaatcaacccaccaaattacgcataaaatttatcgaaaaaagttaatcacatcagagataa
More
|
||||||||||
| CDS seq | atgaacaccttcctcgagctcgagCccttctccactcctctctttgaaatccccgacgatgccgattttgagtacacatccatgCTcgccgctgacgacttctccctcatggacggcgaCTttcttgctgaccagccgccggcgccggcggaggtggtggcaggcggaggtgatgccagtgggaagcggagtttccatgccaacgacggcgaggccatgtgtgtcgtgtcccggtcgtcTaagagaaggaagaaggcgccaacgaattcgaCctcgccgtccaaccgcgacggcagcggcggcggcggcggcggcgaggggaatgagccgacggcggaaaggcgaggtagccggcgggtgTgggtgcgggagcgtagcacggagtggtgggaccgcatgagggaCccggcggcttgcccggaggcggacttccggcgagccttccgcatgccgcgcgcggTgttcgacaagctctgcgacgacctggccgccgccgtcgccaaggtggacaccacgctccgctccgccatccccgtgccgcagcgcgtcgccgtctgcctctggcgcctcgccaccggcgacccactccgcgaggtgtcccgccgctttggcctcggcatctccacctgccacaacatcatcgtccaggtctgcgccgccatcaccgccgtcctcctcaccagggttgtccggtggccggactcccacgccgccgccgcgtccaggttccaggccttgtcttggatccctggagtcgtcggcgccgtgcacaccgagcacttccgcatcgtcgcgccgagggagcacgccggcaagtactacgaccaccgcctcaccggccggaacaacaaggccacctactccgtcgccatgcaggccgtcgtggacgccgacggcgccttcaccgacgtctgcatcggccaCcccggctcgctgtccgacgctgccatcctcgcgaagtcggctctgtacgcccggtgcgaggctgggcttctgctcggccacgacaagctcgggtggcaacagccgctgtggctcgtcggcggcgcgagctacccgctgacgagctggatgctggtgccgtacacgcagccgaaCctgacgtgggcgcaggacaggctcaacgcgcgggtggccgacgcgcgcgcggcggcggtgggtgcgttccggcggctcagggcgcggtggcagtgcctgcggcgcgccgaggtgaagctgccggagctagccaacatgctgggcgcctgctgcgtgctgcacaacctctgcgagcgcagcggccatgggctcgatgccgacctcctcgatctCctggacgacgagctcgtcgacgacggagtggtcgCcggtggcggcaatacagtgcgctcccccgccgccgaacagagataa
More
|
||||||||||
| Protein seq | MNTFLELEPFSTPLFEIPDDADFEYTSMLAADDFSLMDGDFLADQPPAPAEVVAGGGDASGKRSFHANDGEAMCVVSRSSKRRKKAPTNSTSPSNRDGSGGGGGGEGNEPTAERRGSRRVWVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFDKLCDDLAAAVAKVDTTLRSAIPVPQRVAVCLWRLATGDPLREVSRRFGLGISTCHNIIVQVCAAITAVLLTRVVRWPDSHAAAASRFQALSWIPGVVGAVHTEHFRIVAPREHAGKYYDHRLTGRNNKATYSVAMQAVVDADGAFTDVCIGHPGSLSDAAILAKSALYARCEAGLLLGHDKLGWQQPLWLVGGASYPLTSWMLVPYTQPNLTWAQDRLNARVADARAAAVGAFRRLRARWQCLRRAEVKLPELANMLGACCVLHNLCERSGHGLDADLLDLLDDELVDDGVVAGGGNTVRSPAAEQR |
||||||||||
| Function | Protein ALP1-like [UniProtKB/Swiss-Prot:Q9M2U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0005760 | OsLaMu_05g0005760.01 | Chr05 | 4964801 | 4967629 | + | NAM | ||
| CDS seq | atgaacaccttcctcgagctcgagCccttctccactcctctctttgaaatccccgacgatgccgattttgagtacacatccatgCTcgccgctgacgacttctccctcatggacggcgaCTttcttgctgaccagccgccggcgccggcggaggtggtggcaggcggaggtgatgccagtgggaagcggagtttccatgccaacgacggcgaggccatgtgtgtcgtgtcccggtcgtcTaagagaaggaagaaggcgccaacgaattcgaCctcgccgtccaaccgcgacggcagcggcggcggcggcggcggcgaggggaatgagccgacggcggaaaggcgaggtagccggcgggtgTgggtgcgggagcgtagcacggagtggtgggaccgcatgagggaCccggcggcttgcccggaggcggacttccggcgagccttccgcatgccgcgcgcggTgttcgacaagctctgcgacgacctggccgccgccgtcgccaaggtggacaccacgctccgctccgccatccccgtgccgcagcgcgtcgccgtctgcctctggcgcctcgccaccggcgacccactccgcgaggtgtcccgccgctttggcctcggcatctccacctgccacaacatcatcgtccaggtctgcgccgccatcaccgccgtcctcctcaccagggttgtccggtggccggactcccacgccgccgccgcgtccaggttccaggccttgtcttggatccctggagtcgtcggcgccgtgcacaccgagcacttccgcatcgtcgcgccgagggagcacgccggcaagtactacgaccaccgcctcaccggccggaacaacaaggccacctactccgtcgccatgcaggccgtcgtggacgccgacggcgccttcaccgacgtctgcatcggccaCcccggctcgctgtccgacgctgccatcctcgcgaagtcggctctgtacgcccggtgcgaggctgggcttctgctcggccacgacaagctcgggtggcaacagccgctgtggctcgtcggcggcgcgagctacccgctgacgagctggatgctggtgccgtacacgcagccgaaCctgacgtgggcgcaggacaggctcaacgcgcgggtggccgacgcgcgcgcggcggcggtgggtgcgttccggcggctcagggcgcggtggcagtgcctgcggcgcgccgaggtgaagctgccggagctagccaacatgctgggcgcctgctgcgtgctgcacaacctctgcgagcgcagcggccatgggctcgatgccgacctcctcgatctCctggacgacgagctcgtcgacgacggagtggtcgCcggtggcggcaatacagtgcgctcccccgccgccgaacagagataa
More
|
|||||||
| Protein seq | MNTFLELEPFSTPLFEIPDDADFEYTSMLAADDFSLMDGDFLADQPPAPAEVVAGGGDASGKRSFHANDGEAMCVVSRSSKRRKKAPTNSTSPSNRDGSGGGGGGEGNEPTAERRGSRRVWVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFDKLCDDLAAAVAKVDTTLRSAIPVPQRVAVCLWRLATGDPLREVSRRFGLGISTCHNIIVQVCAAITAVLLTRVVRWPDSHAAAASRFQALSWIPGVVGAVHTEHFRIVAPREHAGKYYDHRLTGRNNKATYSVAMQAVVDADGAFTDVCIGHPGSLSDAAILAKSALYARCEAGLLLGHDKLGWQQPLWLVGGASYPLTSWMLVPYTQPNLTWAQDRLNARVADARAAAVGAFRRLRARWQCLRRAEVKLPELANMLGACCVLHNLCERSGHGLDADLLDLLDDELVDDGVVAGGGNTVRSPAAEQR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0183900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g09150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0183900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005730 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005630 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0077800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0077900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005710 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005790 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006150 | SBH | 0.064658 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028490 | SBH | 0.186870 | 1.002185 | 0.277989 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028990 | SBH | 0.337616 | 4.711618 | 2.803510 |
