Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0003490 | OGI:05007920 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:2621863-2626810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacctgtttaatgcaaatcaatacatcagtccaaagaacagtgttcagggttgtgaactttttgggtttaactgcttagtttatcacaaacttggcaagatacatctactgctttagctgtataaaatttaatgcgaccaaatctattgtatagaagaataaatcgatctcagaatatggagcagggatagaaaaatgttcTtttttgttgagaaaaaggattgctaaatttattgaattgctaatcattgaaaacatgaaagctcactacattgacatcaacaggacaaattagaattcacaaaaccatttgtacatgtaaatcgcataagacatgcacgagtacagggaaatggctatcaacctcacatggtactgaggcacttaccaaactacaagacaaaaccacattacatttttacatcacagttaacctgtatagaaaagatcacttgcctgtcgttgctagtggctcctgggtagaaatctcttcccgagaatctaatcggtaaaacaaaatgatatactcaggcaaatgaacacaaattataatccttcaattatcgtacttgtgctatgaaatattcatgacgtagtaatcaagaaacattatcacaatgtataaaatggcatttagcatgctatcaatagttagcacatgacagtgtgcaaaagagcagcagattaacacagcaaagatgacttaccaggacctacttgatcaagtggtactgaggttgatgctccatctgcagtagggatgtgagaatcacctagacaatacaaatacttttagtaaactgaaattctcaaaatccacaaaaagaaaccgcaaacacacatgaaaacaccaggttgtgctttctagcacaaaagttcattcctgagtaatttcgaatagtaaagaaacacacacgttggtaaacacaacacgacagcaaccatggctagctacagtttacctgcccagccctcttctcttagtgcatcttccccaagcggggccagattaggaatctcttcacaggtagggccagcaacaaagaaaacgcctaggaaatgaaaaacatcaatttatatcattgttgcacaatgtaccggtaaagcatatctactctcgtcaccattaaagaaatctgcagacctcttttaactacttccccattttctaagacatttgctgttaacttttttatgctttgagcactgtatcataaatcctttctccattgagatattcaataatgtcacctattctgactcccagtttctcaaggatggacccttctgatacctatattttagttgacagtaggcgtatatcttcaggaagtgcagagaagtctacaattagcaatgataaacagtctatatatctctttaacaattaggccatcacaaatatgagtcttgcgcaatatcatctcgatatggggaaggtctagaaacttaatggcccaaagcttaactccaagttgagggcgagggatgcacctactccagatagccattaatttcaattcaacagaggatataaaggataataaaaatttattaaaacataataatttgaaactcaaataacttgtacaaaatgttgaaagtttgacagaatatatcaaatcaattgatacggaatagagttaaaacaaaatatatataatctattccaatactctgtgcaactaaggcccgtcatggtgctgatcctacaatttgatacatgagttttagcattgcatgatttaactacaatatacattagaaaatgcacatctaaggcagtttaggttatctatctgaattaaatcaactctacaatttaactttcaacaacaaacagatgtgcaacacaatagaaaaatagaactgaaaaagaaaacgcactggaacttatgccatagcttcaaacacttgagtatcaccgatgaaggtataaaagcatgtataagaccagtcattcccaccaccttccccttaaggtcaatcactaatcctcccaagccaaactacaacatttaccaaattaactagaacaaatcatacatgccatacactacacaattcaaaataagaaatggtgtggggtaaaatggagatacctcggggattgcactgctaacgtacatatagtgatgacgatcacataagtatggattagagtacaacactctgccatgacttatacgcagatacaaattttcatctcttccaagcatgaaaatatgttgagcacggtcaactctagaactaaaagtaggtaactcgctaggagtctccagagcaatctcaaataaagccagattataatgtgtttgagagtatatcaagcgggcctccactgtggtgtcatctagtaagtggacatagacctggacgttgattgcataatataccacactaaattagagaacaacacccaaaaattacataactgtaccaaaaggatagaaaatgatccacaatcatttcaacaaaagaacagtaccaaaaggatagaagatgatccacaatcatttcaacaaaaaaatacatgatacatatgtttctagaagagtcgaatgtaggacaactaaattgattcagtaaccttagatacatattggaggataaactacttttctaggttgggcagaagttaagcttctatggaggcaatattatgtttctgtttgaagtattcattgtagcaattcatatttttaatataatggaacttccaagctggatcttaaagacgttaataaaaaaagaaaaaaaaagtctaatttactaccccaaactatcgcgtttgtctactttaccccctaaacaatttttaggctcacttaaccccctaaacaattaataccaggtcgtttagctccctagcctggtattccacgactgtttcgccagcgtggaggtggttttgattgattcagccacgtgagttgccgaaatggttgctagatgacgtagctctgaaactgggccatcaatgtggagcgttcgttcctcttgttgggtcgtcaacaagggtttttcgttcttaacgttccgctagccactacacgagaaatttccgcgcggcaccatataatcagagatcattagtcgccttctaaagccgacctcatccagatcacctccttgtctcctttcttagtgagcgacagcccccaacccctgcttattcacatgatcgctctggatttgtcctcctgatcgctgctccttgcggcaacgttgaggttagtcatagtatcttattggtatgattttgctatggtagaactatgtgttggttttggatacaacactcccatgaacaagaagcagaggaaccaggatagcatttagcaatatactagtgtacctgtcggtaatcctaataagctttttagtgtgtccagattttgtcgtagctatcataggctaacagagaggcaaagaaaagatgttttctgcacaccatggatatgcaacatgcaggtgtttgtacttatacctgtgtcaacctctcttcttgctcgacaattttcttggtaatcaaaccttactggtttaattagctatcacaaccgaaataaaatggtattatggtttttttttctttttttttcttttttcctaaaagaattctttttctttaggaatagtacgattaggttctgtccttttagttgtattttctccaacttcatgaaaaaacatcaatatttaccaacatacctcagcattaggacaacactcatcttcaccagaccaacaatctaagcttaactttgagcaaataatatcagaggttgtcattacaattccctttttccttgtttcatcccaatcaactagaaaccccgagcagcgagctaatggttttcctcctacaaatatacatacatacgtacgtacATatatatatatatatatatatatagtatcagcaaacaaataaaattttctattatatcaaataagagatgtgaaaactatgtaccaatggatgacgaaagtcctaaaatgaattttgcagcaccaaggactgctttctttgcaggttcatggatgtccaacaactttgggtccgaaagacacaaagatttacttgagttaagtgtgggcaggctcagctgacgagctacaagaccatcaatgcataagtacatgataatttagagttagaggaataTttttttttaatcttgcaaaacattttttattaaagagaaaacgcactaagaaagtaacactaaaaaaatcctccttttttctattagatggagggtggtactgttctcaacttttgacttacaccatcattaacaatgagttatgccaaatctgcattatatgtcaacagcataaagaagaaaatgaaagaaaggaacattggcatatacaatatacatagtgtacaggtcagtcaactaatttatagagattgctaggagctaaataaggtcactagctgtcgatacaggatatgcacgatctgtataatcaatcaaccataaaggtatattccaacagaaaagaaggaagactggactgaaaattacctcttttttcttggaattcctcacgtctctgctggtaagcatcaacaatgtccatgtcaggtggctcaaggatctcttgaccatcagaatcatacccactgaatttgaaaggtaataagggcatgtggagtggagagctcagtgcagaagatacctcctcctcctcctccccttcattcatcttctctggcaccttttcctcaccatcctcacaactatgatcggcctcggtcatttttctcctcctcttcatcccttgagctcgctcagatgatggtgaagcaggtggagatcgggagcaatgtgagcgccccttgctgtcttgctcattaccacggccacgcacagtcctcaggggctcctgcaaccttggcacatcgtcctcttccgcagcaacaggtgccat
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| CDS seq | atggcacctgttgctgcggaagaggacgatgtgccaaggttgcaggagcccctgaggactgtgcgtggccgtggtaatgagcaagacagcaaggggcgctcacattgctcccgatctccacctgcttcaccatcatctgagcgagctcaagggatgaagaggaggagaaaaatgaccgaggccgatcatagttgtgaggatggtgaggaaaaggtgccagagaagatgaatgaaggggaggaggaggaggaggtatcttctgcactgagctctccactccacatgcccttattacctttcaaattcagtgggtatgattctgatggtcaagagatccttgagccacctgacatggacattgttgatgcttaccagcagagacgtgaggaattccaagaaaaaagaggaggaaaaccattagctcgctgctcggggtttctagttgattgggatgaaacaaggaaaaagggaattgtaatgacaacctctgatattatttgctcaaagttaagcttagattgttggtctggtgaagatgagtgttgtcctaatgctgagcctatgatagctacgacaaaatctggacacactaaaaagcttattaggattaccgacagtgtggtatattatgcaatcaacgtccaggtctatgtccacttactagatgacaccacagtggaggcccgcttgatatactctcaaacacattataatctggctttatttgagattgctctggagactcctagcgagttacctacttttagttctagagttgaccgtgctcaacatattttcatgcttggaagagatgaaaatttgtatctgcgtataagtcatggcagagtgttgtactctaatccatacttatgtgatcgtcatcactatatgtacgttagcagtgcaatccccgagtttggcttgggaggattagtgattgaccttaaggggaaggtggtgggaatgactggtcttatacatgcttttataccttcatcggtgatactcaagtgtttgaagctatggcataagttccatgctcaaagcataaaaaagttaacagcaaatgtcttagaaaatggggaagtagttaaaagaggcgttttctttgttgctggccctacctgtgaagagattcctaatctggccccgcttggggaagatgcactaagagaagagggctgggcaggtgattctcacatccctactgcagatggagcatcaacctcagtaccacttgatcaagtaggtcctgtttggtaa
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| Protein seq | MAPVAAEEDDVPRLQEPLRTVRGRGNEQDSKGRSHCSRSPPASPSSERAQGMKRRRKMTEADHSCEDGEEKVPEKMNEGEEEEEVSSALSSPLHMPLLPFKFSGYDSDGQEILEPPDMDIVDAYQQRREEFQEKRGGKPLARCSGFLVDWDETRKKGIVMTTSDIICSKLSLDCWSGEDECCPNAEPMIATTKSGHTKKLIRITDSVVYYAINVQVYVHLLDDTTVEARLIYSQTHYNLALFEIALETPSELPTFSSRVDRAQHIFMLGRDENLYLRISHGRVLYSNPYLCDRHHYMYVSSAIPEFGLGGLVIDLKGKVVGMTGLIHAFIPSSVILKCLKLWHKFHAQSIKKLTANVLENGEVVKRGVFFVAGPTCEEIPNLAPLGEDALREEGWAGDSHIPTADGASTSVPLDQVGPVW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0003490 | OsLaMu_05g0003490.01 | Chr05 | 2621863 | 2626810 | - | NAM | ||
| CDS seq | atggcacctgttgctgcggaagaggacgatgtgccaaggttgcaggagcccctgaggactgtgcgtggccgtggtaatgagcaagacagcaaggggcgctcacattgctcccgatctccacctgcttcaccatcatctgagcgagctcaagggatgaagaggaggagaaaaatgaccgaggccgatcatagttgtgaggatggtgaggaaaaggtgccagagaagatgaatgaaggggaggaggaggaggaggtatcttctgcactgagctctccactccacatgcccttattacctttcaaattcagtgggtatgattctgatggtcaagagatccttgagccacctgacatggacattgttgatgcttaccagcagagacgtgaggaattccaagaaaaaagaggaggaaaaccattagctcgctgctcggggtttctagttgattgggatgaaacaaggaaaaagggaattgtaatgacaacctctgatattatttgctcaaagttaagcttagattgttggtctggtgaagatgagtgttgtcctaatgctgagcctatgatagctacgacaaaatctggacacactaaaaagcttattaggattaccgacagtgtggtatattatgcaatcaacgtccaggtctatgtccacttactagatgacaccacagtggaggcccgcttgatatactctcaaacacattataatctggctttatttgagattgctctggagactcctagcgagttacctacttttagttctagagttgaccgtgctcaacatattttcatgcttggaagagatgaaaatttgtatctgcgtataagtcatggcagagtgttgtactctaatccatacttatgtgatcgtcatcactatatgtacgttagcagtgcaatccccgagtttggcttgggaggattagtgattgaccttaaggggaaggtggtgggaatgactggtcttatacatgcttttataccttcatcggtgatactcaagtgtttgaagctatggcataagttccatgctcaaagcataaaaaagttaacagcaaatgtcttagaaaatggggaagtagttaaaagaggcgttttctttgttgctggccctacctgtgaagagattcctaatctggccccgcttggggaagatgcactaagagaagagggctgggcaggtgattctcacatccctactgcagatggagcatcaacctcagtaccacttgatcaagtaggtcctgtttggtaa
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| Protein seq | MAPVAAEEDDVPRLQEPLRTVRGRGNEQDSKGRSHCSRSPPASPSSERAQGMKRRRKMTEADHSCEDGEEKVPEKMNEGEEEEEVSSALSSPLHMPLLPFKFSGYDSDGQEILEPPDMDIVDAYQQRREEFQEKRGGKPLARCSGFLVDWDETRKKGIVMTTSDIICSKLSLDCWSGEDECCPNAEPMIATTKSGHTKKLIRITDSVVYYAINVQVYVHLLDDTTVEARLIYSQTHYNLALFEIALETPSELPTFSSRVDRAQHIFMLGRDENLYLRISHGRVLYSNPYLCDRHHYMYVSSAIPEFGLGGLVIDLKGKVVGMTGLIHAFIPSSVILKCLKLWHKFHAQSIKKLTANVLENGEVVKRGVFFVAGPTCEEIPNLAPLGEDALREEGWAGDSHIPTADGASTSVPLDQVGPVW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0145700 | SBH | 0.207103 | 0.320173 | 1.871223 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g05550 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0145700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0003360 | RBH | 0.000000 | 0.0 | 2.797325 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0003400 | RBH | 0.000000 | 0.645735 | 0.830261 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0003360 | RBH | 0.271157 | 0.0 | 4.424067 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0003430 | RBH | 0.090104 | 0.030902 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0003490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0040100 | RBH | 1.1366325 | 0.880957 | 8.6227895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0003260 | RBH | 0.0 | 0.0 | 0.182191 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0041500 | RBH | 0.675641 | 0.9071195 | 5.2331515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0003380 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0003300 | RBH | 0.700121 | 4.389198 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0003420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0003440 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0003380 | RBH | 0.198556 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003310 | RBH | 0.056724 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0003490 | RBH | 0.000000 | 0.000000 | 0.000000 |
