Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_05g0002400 | OGI:05005560 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr05:1768207-1770120 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtgttcgaccaaatgccgcctccgcctcctcctccccctcccccgccgccacctctccaccgcgccggcgacgagccaccggaataagataccggcggacccatcccgtacggagcggcctcgtccagaccctggctccggggactccgcgaggcaccatgaggcaaccgtcaggaggctggccgcggcgggcgacgtggacggcgtccagtacgcgctgcaggagatgcggctgcgcggggtggcgtgcaccgaggacgccctcgtcgcggccatcggcgccttcgcccgcgccggctccgcggaccgcgcgctcaagacgttctaccgcgccagcgacctcggctgccgcgaccccggcgtgcgggtctacaatcacctgctcgacgcgctgctcagggagaacatggtcggggcggtcgtgccggtgtacgacaacatgaggaaggccggcgtcgatcccaacgtgtacacttacaacctgctcatcagggcgctgtgccagaacgaccgggtcgatgccgcgcgcaagatgctcgatgaaatgtccaggaaggggtgccacccggacgaggtgagccatgggacgatagtttcgggtatgtgcaagcttggcagggtggaggaggccaggggattcctggctgagacggtgccggtgcaagcgtcgtacaacgctgtcgttcacgcgctttgtggagagttcaggatgtgggaagtgttctcggttgtcaacgagatggtgcagaggggattgcaaccaaatgtcgtcacttacaccactatagtcgacgcattttgcaaggccagggagctgaggatggcttgtgccattttggctaggatggtaagcatgggatgcactccaaatgttctcacatttactgcgttggtgaaagggttttttgaggatggaaaggtacatgatgcactttctatgtggcattggatggtggatgaaggatgggctccatcaacaatctcttacaatgttctcatccgtggcctttgctgcattggtgatttgaaaggagcattagatttcttcaacagtatgaaaagaaatgccctccttcccaacgcgactacctattctacgcttgttgatggcttttctaacgctggagatctggatggcgccatgctgatatggaatgagatgaaaagttccggttgcaagccaaatgttgttgtttacacgaacatgatcgatgtgctttgcaagaagatgatgtttgaccaagcagagagtcttattgataagatgttaatggacaattgtcctcctaacaccgtgacattcaacacgttgattggaaggctgtgcgattgtggaagagttgggagagcattgaatgtgtttcatgggatgagaaggaatggatgccatccaaatgataggacttacaacgagttgcttcatggccttttcagagaaggaaatcacaaagacgcttttgcaatggtgattgagatgcttaacaatgggtttgagttaagtctagtaacttacaacacagtgattaattgtctgtgccaaatgtgcatgaggaaacatgctatgttgcttctggggaggatgatggttcaaggaattcaacctgatgcattcactttcaatgcgataattcatgcttattgcaaggaagggaaggtcagtattgctgcttgtctattgggacaaatgaatgcagtgaactgcccacgcaacgtagttgcgtataccattctgatttcagagctttgcaatcagggtaagctatcaaatgccatggtttacctcttaaagatgttatatgaaggtatttgtccgaatgaagcaacatggaatgtgttggttcgtgcaatttttacaaatattggcactattggaccaattcatttgtttaagtacattgttgaagatttataa
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| CDS seq | atgtgttcgaccaaatgccgcctccgcctcctcctccccctcccccgccgccacctctccaccgcgccggcgacgagccaccggaataagataccggcggacccatcccgtacggagcggcctcgtccagaccctggctccggggactccgcgaggcaccatgaggcaaccgtcaggaggctggccgcggcgggcgacgtggacggcgtccagtacgcgctgcaggagatgcggctgcgcggggtggcgtgcaccgaggacgccctcgtcgcggccatcggcgccttcgcccgcgccggctccgcggaccgcgcgctcaagacgttctaccgcgccagcgacctcggctgccgcgaccccggcgtgcgggtctacaatcacctgctcgacgcgctgctcagggagaacatggtcggggcggtcgtgccggtgtacgacaacatgaggaaggccggcgtcgatcccaacgtgtacacttacaacctgctcatcagggcgctgtgccagaacgaccgggtcgatgccgcgcgcaagatgctcgatgaaatgtccaggaaggggtgccacccggacgaggtgagccatgggacgatagtttcgggtatgtgcaagcttggcagggtggaggaggccaggggattcctggctgagacggtgccggtgcaagcgtcgtacaacgctgtcgttcacgcgctttgtggagagttcaggatgtgggaagtgttctcggttgtcaacgagatggtgcagaggggattgcaaccaaatgtcgtcacttacaccactatagtcgacgcattttgcaaggccagggagctgaggatggcttgtgccattttggctaggatggtaagcatgggatgcactccaaatgttctcacatttactgcgttggtgaaagggttttttgaggatggaaaggtacatgatgcactttctatgtggcattggatggtggatgaaggatgggctccatcaacaatctcttacaatgttctcatccgtggcctttgctgcattggtgatttgaaaggagcattagatttcttcaacagtatgaaaagaaatgccctccttcccaacgcgactacctattctacgcttgttgatggcttttctaacgctggagatctggatggcgccatgctgatatggaatgagatgaaaagttccggttgcaagccaaatgttgttgtttacacgaacatgatcgatgtgctttgcaagaagatgatgtttgaccaagcagagagtcttattgataagatgttaatggacaattgtcctcctaacaccgtgacattcaacacgttgattggaaggctgtgcgattgtggaagagttgggagagcattgaatgtgtttcatgggatgagaaggaatggatgccatccaaatgataggacttacaacgagttgcttcatggccttttcagagaaggaaatcacaaagacgcttttgcaatggtgattgagatgcttaacaatgggtttgagttaagtctagtaacttacaacacagtgattaattgtctgtgccaaatgtgcatgaggaaacatgctatgttgcttctggggaggatgatggttcaaggaattcaacctgatgcattcactttcaatgcgataattcatgcttattgcaaggaagggaaggtcagtattgctgcttgtctattgggacaaatgaatgcagtgaactgcccacgcaacgtagttgcgtataccattctgatttcagagctttgcaatcagggtaagctatcaaatgccatggtttacctcttaaagatgttatatgaaggtatttgtccgaatgaagcaacatggaatgtgttggttcgtgcaatttttacaaatattggcactattggaccaattcatttgtttaagtacattgttgaagatttataa
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| Protein seq | MCSTKCRLRLLLPLPRRHLSTAPATSHRNKIPADPSRTERPRPDPGSGDSARHHEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIGTIGPIHLFKYIVEDL |
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| Function | Pentatricopeptide repeat-containing protein At3g48810 [UniProtKB/Swiss-Prot:Q9M302] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_05g0002400 | OsLaMu_05g0002400.01 | Chr05 | 1768207 | 1770120 | + | NAM | ||
| CDS seq | atgtgttcgaccaaatgccgcctccgcctcctcctccccctcccccgccgccacctctccaccgcgccggcgacgagccaccggaataagataccggcggacccatcccgtacggagcggcctcgtccagaccctggctccggggactccgcgaggcaccatgaggcaaccgtcaggaggctggccgcggcgggcgacgtggacggcgtccagtacgcgctgcaggagatgcggctgcgcggggtggcgtgcaccgaggacgccctcgtcgcggccatcggcgccttcgcccgcgccggctccgcggaccgcgcgctcaagacgttctaccgcgccagcgacctcggctgccgcgaccccggcgtgcgggtctacaatcacctgctcgacgcgctgctcagggagaacatggtcggggcggtcgtgccggtgtacgacaacatgaggaaggccggcgtcgatcccaacgtgtacacttacaacctgctcatcagggcgctgtgccagaacgaccgggtcgatgccgcgcgcaagatgctcgatgaaatgtccaggaaggggtgccacccggacgaggtgagccatgggacgatagtttcgggtatgtgcaagcttggcagggtggaggaggccaggggattcctggctgagacggtgccggtgcaagcgtcgtacaacgctgtcgttcacgcgctttgtggagagttcaggatgtgggaagtgttctcggttgtcaacgagatggtgcagaggggattgcaaccaaatgtcgtcacttacaccactatagtcgacgcattttgcaaggccagggagctgaggatggcttgtgccattttggctaggatggtaagcatgggatgcactccaaatgttctcacatttactgcgttggtgaaagggttttttgaggatggaaaggtacatgatgcactttctatgtggcattggatggtggatgaaggatgggctccatcaacaatctcttacaatgttctcatccgtggcctttgctgcattggtgatttgaaaggagcattagatttcttcaacagtatgaaaagaaatgccctccttcccaacgcgactacctattctacgcttgttgatggcttttctaacgctggagatctggatggcgccatgctgatatggaatgagatgaaaagttccggttgcaagccaaatgttgttgtttacacgaacatgatcgatgtgctttgcaagaagatgatgtttgaccaagcagagagtcttattgataagatgttaatggacaattgtcctcctaacaccgtgacattcaacacgttgattggaaggctgtgcgattgtggaagagttgggagagcattgaatgtgtttcatgggatgagaaggaatggatgccatccaaatgataggacttacaacgagttgcttcatggccttttcagagaaggaaatcacaaagacgcttttgcaatggtgattgagatgcttaacaatgggtttgagttaagtctagtaacttacaacacagtgattaattgtctgtgccaaatgtgcatgaggaaacatgctatgttgcttctggggaggatgatggttcaaggaattcaacctgatgcattcactttcaatgcgataattcatgcttattgcaaggaagggaaggtcagtattgctgcttgtctattgggacaaatgaatgcagtgaactgcccacgcaacgtagttgcgtataccattctgatttcagagctttgcaatcagggtaagctatcaaatgccatggtttacctcttaaagatgttatatgaaggtatttgtccgaatgaagcaacatggaatgtgttggttcgtgcaatttttacaaatattggcactattggaccaattcatttgtttaagtacattgttgaagatttataa
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| Protein seq | MCSTKCRLRLLLPLPRRHLSTAPATSHRNKIPADPSRTERPRPDPGSGDSARHHEATVRRLAAAGDVDGVQYALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDALLRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICPNEATWNVLVRAIFTNIGTIGPIHLFKYIVEDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.171063 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0132000 | RBH | 0.265440 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04160 | RBH | 0.187945 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0132000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0002350 | RBH | 0.099256 | 0.0 | 0.601260 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0002400 | RBH | 0.199579 | 0.0 | 0.646331 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0002380 | RBH | 0.000000 | 0.000000 | 2.304657 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0002330 | RBH | 0.071557 | 0.026430 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0002390 | RBH | 0.0 | 0.0 | 0.590783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0029300 | RBH | 0.684925 | 1.617182 | 0.4730945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0002340 | RBH | 0.039002 | 0.209506 | 0.193174 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0028500 | RBH | 1.9316925 | 3.043866 | 8.2913655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0002350 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0002270 | RBH | 0.197707 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0002370 | RBH | 1.278826 | 3.439132 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0002380 | RBH | 0.288911 | 0.124727 | 0.120277 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013170 | SBH | 0.319465 | 3.213094 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G002240 | RBH | 0.163828 | 0.464696 | 0.185394 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0002430 | RBH | 0.493969 | 4.766685 | 1.332117 |
