Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0030910 | OGI:04101100 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:35643249-35647933 | ||||||||
| Gene Symbol | OsFbox238, Os_F0385, GIC | ||||||||||
| DNA seq | taggaatttaacaaggatgaatagcggagcatgaattttaccgttgaacacaaccacacagacacaggagcagattaatttacattgttctttgaacaatggcgccacaatttagacgcagatggcctctcgcacaactaaaaaagggcacgactaaaaaaggtcccgcaaattcaaaccatatcaggaaacagataaaagcatgtgatatcaggtttggttagagtctgtacaaatgtggcatatcaggctatcagcagctactttgtcatgtaaggtatccggtggccaccatgagcagctcgggcatcgcaagccattgcaagatacctcaaattgatttaatggcgtatcaagccagccgtgtcgaaccttgtaaaattaacagagccagccatgtcgaaccttataaaattaacagcgccctgtgagctatcagccgatgaataagttgtctcttttgacaataatcatgtcaagtcccgtacagaagcctcacagattttccaagatccatcactctgtctcctcaatatgtactgaacttcatacatactgcaattgtaacagtataaagtatcagtaccgtgttactttagagcacaacaggaaagcgtgataaatagaaacattatcttctgaattacctgtaatagctaggcttcttgggctgggattcatcaacaagctcagccgcttcctcaagaacagcaccaatttctgcaacttcaccagtgccagactcatccaatagtatctccgctcgaacaacagagagatttaacaaaacaaatctccaatagcaggactgatcctttgctgacaatgccaactcttgccactgctcgacaagtaggtcttccattatggacaattcaaatatttaaacatggaagtctatatgtaagtacaccatggataaaaaggaaattaccttcgaaagcattgaaccgtcaagaatttcagggagcatatcaatttgataatcagggccaagagcttcagatttgatgtcttgccactgcttcacaagtgtttctgcttcttgaagagccatactttgcttgcatactgtagcagccactgcattagcaacagaagacaggtcgctttcttcgcttcttgaataaagcctattgtttaaccaaagcatcttgggcagtttttcaaaatgtttcctgacgctgctagtaataaaagaatcttccaacgtcgattcttcattcagggactgtgtggcagcagaacccctacttgcggaggcaggtttcatgtgaccaaactgaaatctgagcagttttaatgtaccaaatagggcaaacccaatgagtgcactatatgcaagtttccctacaatatcaccagtaagaccccacgattccaaggttcttgcaggatgcaatacaagattgcgcttcaggggaacagatgttgtggttgaaccatttgctggcctatccattgaagaatggacccccaggttgtttggcgcaagttgctttacagcttcccccaaatggctggtagaatttaatcttggcgtctgctcccctaaagctctgttgcatggtgacacactagaagatggctgagaactcaaacggaccattcttgtggctcctaatttctgcttggaagtgctaaggatgcgcttaggagccccaaagaagttggcctgccgtaagagaataatgatatgaaattagtctgtagaaaaaaatattcataggtttcattactgaaaatagtaagacacagaccaaagatggtgaacaatctcttgtatccgcaaaacgagaaagtgccacatccttcagccacaattcctgtaaagatacgctatttgccatgagaaaattttaacacaatggagaaatataatattcagtaatctacagtagcacaatttatttgctccaaaacatactacagtgaaatataacataccagagactgacagatagtaaccttgtcattgccgtctttctttttaggtaacccataatttcttgagttggaattcccattactttgaagctgctgaagcttttcaaaaacagtggtgccagattcctgagagcaaacatttagttatgataatgtaaactagtaaaatttttgcagttcaaatcagcttatcacctctccaaggagatacaaacagaatgattcctcaaatttcaggtctgtgttttcagatgcaactaaacaatcgcaaatggttttggctttactgatctgcataaaggaactgtacgttaaataatgcataaatagcaaaaatgatagtttactactattgagaaggagaaggtaccaggtcagcctgccgggttgaaaaccctaacgcaaagtgagcaagcatcgctacatggaaacaattgaagtcaactactgcccgctggctctgggattccaacgattttttgtttttacgagttgtagccaaagtatcccaagaaagtagatccacaatttcagtggctaacaacttattcattgcttggcccaagaaacaaggccaatcatgaactctacaagaggattcaacgtcaagaccctgtctaagcagttcagagagagctgcaatagcaccctgcctgcgttcagcgttttcaggtgtctgaggtaagcttagaagctccagagtgcaagcaggtgcaagctcttcaagtgattcttcaatctagttcatccaatgaaataagttaagggcataattctacatgtagaagaatctgtagagcgataacaacaaaaattaacctgttcaagaagggacaacttctccaaagacggttttctcctcaacaggtattgagcacgtgctagagcttcaaagccaagagacactttacttttctcaaagctagcttttgcaatagaacactacaagaaaatgcatcaaatcattgcaaaatataccaatttgtagtcagttatttaaaattttgtgtgcttcttacttcagctagtgccattgcaagaagcatatcatgaacatatggcctagaatctgggcgtcgtagagccgcatgaccaatttccaaaactagcttctcttctccaacctgaaatgaatattgtagcatgtaatacaccatttcattatgataatggtacattcaattttaataaattcaagctgctaggtgtcttgtattcatgatcacttagaactcacaaacatcataatggtgactcatgatcacttagaactcacaaacatcataatggtgactaacctgcatcccctgcattttacgctacccagtcctaagaaagggcaaagtttaaaacctacgcgctcctcaccacattcctaaggataatttaccctgaagttagcataaaagttttctttattagttaaacattattgatcctaaatcttcttgatccctttcaaatcattcagtgaattgagaatagtattctgacaaagaataaggcagacctataaagaaacataccaggcatggtcatggtgacgactatgactatgtcatgtaacataaaaggtgacaaacctaaaccaaacttggtggttttcctttatttgttcacaataataaggatgtctgtgttacacattacctcctgcaagacacaaagtgcagcaggcaaccaactccaaggtatatgaagagaggatctgggtggaagcttttcttttatgcttcctgcgtactcctgttcaaagagaagtttgtctctcacatctaccagcagagcctaccaaacatgaaagaaataagcaaagattaaccacatgaattctgcattccctacattaaacaaagcagtatatccaaatatatttccagaattccttgattcagcgagcaacctgtctgcaggtagacacctctgccatgtacccgtcttcaatttctgcatttttcagctccattgctgctttgacaatctcatctttctcagccttctctgtaacaccaagaatctgcattggccatttgaaacatgtcactccaaaaatcagggaggcgtgtcacgcgtgtgaactaccagtgcaaattacaataggcatcgtggtgcaaacactaaagttgaattatggtcaagaaacgactatctaatctgcaactgtatcattcgaacagagaccagccgagctaaactagatccatcgacgatataagaccacatttccaaaattcggatccataaacagtacgagtggccaaaaaaaaaaaacctgatagcaagtgacggggatctccaccatcggcgcggcgggggcctcctgcctgctcccctccgcggccaccggcggcgcctccgccaccctcgcgcgcgcaacccacgcggccgcccctcgccgtccgccagccaggcatccacccccggcgtgtgcggacgcattgccatttcccaccccaacacgccgcgtcgaggacccacatgcgaccccggggacaaccgccgccgccgcggccaccgtcggcatcgccatggctggcctgaagacctcacccccccaaccctagcccaccctcgccaacgccaccatgtgcgagcggatggatgctttagggttttgggaggcgggcgagtcgtaggcccccgcgaataaagggacaaagcgtcagcgaggtggaggaggagaggcgtcgtgaaggcgaagccggaggccggagagagagagagagaggaaggtcgat
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| CDS seq | atggcgatgccgacggtggccgcggcggcggcggttgtccccggggtcgcatgtgggtcctcgacgcggcgtgttggggtgggaaatggcaatgcgtccgcacacgccgggggtggatgcctggctggcggacggcgaggggcggccgcgtgggttgcgcgcgcgagggtggcggaggcgccgccggtggccgcggaggggagcaggcaggaggcccccgccgcgccgatggtggagatccccgtcacttgctatcagattcttggtgttacagagaaggctgagaaagatgagattgtcaaagcagcaatggagctgaaaaatgcagaaattgaagacgggtacatggcagaggtgtctacctgcagacaggctctgctggtagatgtgagagacaaacttctctttgaacaggagtacgcaggaagcataaaagaaaagcttccacccagatcctctcttcatataccttggagttggttgcctgctgcactttgtgtcttgcaggaggttggagaagagaagctagttttggaaattggtcatgcggctctacgacgcccagattctaggccatatgttcatgatatgcttcttgcaatggcactagctgaatgttctattgcaaaagctagctttgagaaaagtaaagtgtctcttggctttgaagctctagcacgtgctcaatacctgttgaggagaaaaccgtctttggagaagttgtcccttcttgaacagattgaagaatcacttgaagagcttgcacctgcttgcactctggagcttctaagcttacctcagacacctgaaaacgctgaacgcaggcagggtgctattgcagctctctctgaactgcttagacagggtcttgacgttgaatcctcttgtagagttcatgattggccttgtttcttgggccaagcaatgaataagttgttagccactgaaattgtggatctactttcttgggatactttggctacaactcgtaaaaacaaaaaatcgttggaatcccagagccagcgggcagtagttgacttcaattgtttccatgtagcgatgcttgctcactttgcgttagggttttcaacccggcaggctgacctgatcagtaaagccaaaaccatttgcgattgtttagttgcatctgaaaacacagacctgaaatttgaggaatcattctgtttgtatctccttggagaggaatctggcaccactgtttttgaaaagcttcagcagcttcaaagtaatgggaattccaactcaagaaattatgggttacctaaaaagaaagacggcaatgacaaggttactatctgtcagtctctggaattgtggctgaaggatgtggcactttctcgttttgcggatacaagagattgttcaccatctttggccaacttctttggggctcctaagcgcatccttagcacttccaagcagaaattaggagccacaagaatggtccgtttgagttctcagccatcttctagtgtgtcaccatgcaacagagctttaggggagcagacgccaagattaaattctaccagccatttgggggaagctgtaaagcaacttgcgccaaacaacctgggggtccattcttcaatggataggccagcaaatggttcaaccacaacatctgttcccctgaagcgcaatcttgtattgcatcctgcaagaaccttggaatcgtggggtcttactggtgatattgtagggaaacttgcatatagtgcactcattgggtttgccctatttggtacattaaaactgctcagatttcagtttggtcacatgaaacctgcctccgcaagtaggggttctgctgccacacagtccctgaatgaagaatcgacgttggaagattcttttattactagcagcgtcaggaaacattttgaaaaactgcccaagatgctttggttaaacaataggctttattcaagaagcgaagaaagcgacctgtcttctgttgctaatgcagtggctgctacagtatgcaagcaaagtatggctcttcaagaagcagaaacacttgtgaagcagtggcaagacatcaaatctgaagctcttggccctgattatcaaattgatatgctccctgaaattcttgacggttcaatgctttcgaagtggcaagagttggcattgtcagcaaaggatcagtcctgctattggagatttgttttgttaaatctctctgttgttcgagcggagatactattggatgagtctggcactggtgaagttgcagaaattggtgctgttcttgaggaagcggctgagcttgttgatgaatcccagcccaagaagcctagctattacagtatgtatgaagttcagtacatattgaggagacagagtgatggatcttggaaaatctgtgaggcttctgtacgggacttgacatga
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| Protein seq | MAMPTVAAAAAVVPGVACGSSTRRVGVGNGNASAHAGGGCLAGGRRGAAAWVARARVAEAPPVAAEGSRQEAPAAPMVEIPVTCYQILGVTEKAEKDEIVKAAMELKNAEIEDGYMAEVSTCRQALLVDVRDKLLFEQEYAGSIKEKLPPRSSLHIPWSWLPAALCVLQEVGEEKLVLEIGHAALRRPDSRPYVHDMLLAMALAECSIAKASFEKSKVSLGFEALARAQYLLRRKPSLEKLSLLEQIEESLEELAPACTLELLSLPQTPENAERRQGAIAALSELLRQGLDVESSCRVHDWPCFLGQAMNKLLATEIVDLLSWDTLATTRKNKKSLESQSQRAVVDFNCFHVAMLAHFALGFSTRQADLISKAKTICDCLVASENTDLKFEESFCLYLLGEESGTTVFEKLQQLQSNGNSNSRNYGLPKKKDGNDKVTICQSLELWLKDVALSRFADTRDCSPSLANFFGAPKRILSTSKQKLGATRMVRLSSQPSSSVSPCNRALGEQTPRLNSTSHLGEAVKQLAPNNLGVHSSMDRPANGSTTTSVPLKRNLVLHPARTLESWGLTGDIVGKLAYSALIGFALFGTLKLLRFQFGHMKPASASRGSAATQSLNEESTLEDSFITSSVRKHFEKLPKMLWLNNRLYSRSEESDLSSVANAVAATVCKQSMALQEAETLVKQWQDIKSEALGPDYQIDMLPEILDGSMLSKWQELALSAKDQSCYWRFVLLNLSVVRAEILLDESGTGEVAEIGAVLEEAAELVDESQPKKPSYYSMYEVQYILRRQSDGSWKICEASVRDLT |
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| Function | Plastid division protein CDP1, chloroplastic [UniProtKB/Swiss-Prot:Q8VY16] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0030910 | OsLaMu_04g0030910.01 | Chr04 | 35643249 | 35647933 | - | NAM | ||
| CDS seq | atggcgatgccgacggtggccgcggcggcggcggttgtccccggggtcgcatgtgggtcctcgacgcggcgtgttggggtgggaaatggcaatgcgtccgcacacgccgggggtggatgcctggctggcggacggcgaggggcggccgcgtgggttgcgcgcgcgagggtggcggaggcgccgccggtggccgcggaggggagcaggcaggaggcccccgccgcgccgatggtggagatccccgtcacttgctatcagattcttggtgttacagagaaggctgagaaagatgagattgtcaaagcagcaatggagctgaaaaatgcagaaattgaagacgggtacatggcagaggtgtctacctgcagacaggctctgctggtagatgtgagagacaaacttctctttgaacaggagtacgcaggaagcataaaagaaaagcttccacccagatcctctcttcatataccttggagttggttgcctgctgcactttgtgtcttgcaggaggttggagaagagaagctagttttggaaattggtcatgcggctctacgacgcccagattctaggccatatgttcatgatatgcttcttgcaatggcactagctgaatgttctattgcaaaagctagctttgagaaaagtaaagtgtctcttggctttgaagctctagcacgtgctcaatacctgttgaggagaaaaccgtctttggagaagttgtcccttcttgaacagattgaagaatcacttgaagagcttgcacctgcttgcactctggagcttctaagcttacctcagacacctgaaaacgctgaacgcaggcagggtgctattgcagctctctctgaactgcttagacagggtcttgacgttgaatcctcttgtagagttcatgattggccttgtttcttgggccaagcaatgaataagttgttagccactgaaattgtggatctactttcttgggatactttggctacaactcgtaaaaacaaaaaatcgttggaatcccagagccagcgggcagtagttgacttcaattgtttccatgtagcgatgcttgctcactttgcgttagggttttcaacccggcaggctgacctgatcagtaaagccaaaaccatttgcgattgtttagttgcatctgaaaacacagacctgaaatttgaggaatcattctgtttgtatctccttggagaggaatctggcaccactgtttttgaaaagcttcagcagcttcaaagtaatgggaattccaactcaagaaattatgggttacctaaaaagaaagacggcaatgacaaggttactatctgtcagtctctggaattgtggctgaaggatgtggcactttctcgttttgcggatacaagagattgttcaccatctttggccaacttctttggggctcctaagcgcatccttagcacttccaagcagaaattaggagccacaagaatggtccgtttgagttctcagccatcttctagtgtgtcaccatgcaacagagctttaggggagcagacgccaagattaaattctaccagccatttgggggaagctgtaaagcaacttgcgccaaacaacctgggggtccattcttcaatggataggccagcaaatggttcaaccacaacatctgttcccctgaagcgcaatcttgtattgcatcctgcaagaaccttggaatcgtggggtcttactggtgatattgtagggaaacttgcatatagtgcactcattgggtttgccctatttggtacattaaaactgctcagatttcagtttggtcacatgaaacctgcctccgcaagtaggggttctgctgccacacagtccctgaatgaagaatcgacgttggaagattcttttattactagcagcgtcaggaaacattttgaaaaactgcccaagatgctttggttaaacaataggctttattcaagaagcgaagaaagcgacctgtcttctgttgctaatgcagtggctgctacagtatgcaagcaaagtatggctcttcaagaagcagaaacacttgtgaagcagtggcaagacatcaaatctgaagctcttggccctgattatcaaattgatatgctccctgaaattcttgacggttcaatgctttcgaagtggcaagagttggcattgtcagcaaaggatcagtcctgctattggagatttgttttgttaaatctctctgttgttcgagcggagatactattggatgagtctggcactggtgaagttgcagaaattggtgctgttcttgaggaagcggctgagcttgttgatgaatcccagcccaagaagcctagctattacagtatgtatgaagttcagtacatattgaggagacagagtgatggatcttggaaaatctgtgaggcttctgtacgggacttgacatga
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| Protein seq | MAMPTVAAAAAVVPGVACGSSTRRVGVGNGNASAHAGGGCLAGGRRGAAAWVARARVAEAPPVAAEGSRQEAPAAPMVEIPVTCYQILGVTEKAEKDEIVKAAMELKNAEIEDGYMAEVSTCRQALLVDVRDKLLFEQEYAGSIKEKLPPRSSLHIPWSWLPAALCVLQEVGEEKLVLEIGHAALRRPDSRPYVHDMLLAMALAECSIAKASFEKSKVSLGFEALARAQYLLRRKPSLEKLSLLEQIEESLEELAPACTLELLSLPQTPENAERRQGAIAALSELLRQGLDVESSCRVHDWPCFLGQAMNKLLATEIVDLLSWDTLATTRKNKKSLESQSQRAVVDFNCFHVAMLAHFALGFSTRQADLISKAKTICDCLVASENTDLKFEESFCLYLLGEESGTTVFEKLQQLQSNGNSNSRNYGLPKKKDGNDKVTICQSLELWLKDVALSRFADTRDCSPSLANFFGAPKRILSTSKQKLGATRMVRLSSQPSSSVSPCNRALGEQTPRLNSTSHLGEAVKQLAPNNLGVHSSMDRPANGSTTTSVPLKRNLVLHPARTLESWGLTGDIVGKLAYSALIGFALFGTLKLLRFQFGHMKPASASRGSAATQSLNEESTLEDSFITSSVRKHFEKLPKMLWLNNRLYSRSEESDLSSVANAVAATVCKQSMALQEAETLVKQWQDIKSEALGPDYQIDMLPEILDGSMLSKWQELALSAKDQSCYWRFVLLNLSVVRAEILLDESGTGEVAEIGAVLEEAAELVDESQPKKPSYYSMYEVQYILRRQSDGSWKICEASVRDLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.076344 | 2.832821 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0675800 | RBH | 1.701033 | 1.101902 | 3.547046 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g57920 | RBH | 0.742495 | 0.501715 | 0.587334 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0675800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030880 | RBH | 0.172471 | 2.695133 | 1.675538 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031660 | RBH | 0.352312 | 0.000000 | 0.754290 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031230 | RBH | 0.300714 | 1.652880 | 2.567867 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031060 | RBH | 0.021019 | 0.047703 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031300 | RBH | 4.173641 | 3.330786 | 7.105802 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029940 | RBH | 0.193182 | 0.337079 | 0.995501 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0550200 | RBH | 2.5596995 | 3.317447 | 11.7467925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030390 | RBH | 0.138349 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030220 | RBH | 0.610542 | 1.953471 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030350 | RBH | 0.761634 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030900 | RBH | 0.417161 | 0.575507 | 0.732462 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030410 | RBH | 0.000000 | 1.268872 | 1.400447 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030100 | RBH | 0.191278 | 2.782490 | 3.328465 |
