Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0012120 | OGI:04061810 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:20388041-20392731 | ||||||||
| Gene Symbol | CLPC1, ClpC1 | ||||||||||
| DNA seq | ttagtcttccatttctagagaagatgaagctagcataggccttccttcttgaggcaacacgagcacggcggatggcgcggcgaatgctttgtcagcctcatgtaccaatatacctggagtgtccaatgagcttggagacgtagctctcatgaactcactcatgtctagtctgatcatggcctcttctgagccaaagtagtaggctgcaagagcctttgctaactctgatttaccgacaccagttggtccagagaagatgaagctagcaataggccgattcgggttcttgaggccaacacgagcacggcGgatggcacggctaatagctttgacagcctcatcctgaccaatgatacgcgtatggagtgtctcctccatcttaaggagacggtcagactcatcagatgagactttctccAcaGgtattccagtccaagaggacacgatatgctgaatatctgcctcagtaacaaggggaccgacttcaccggattcagtctctgctttaaccatttccttgctcttgtcaataatggctgtaatttgggccttcAattccatttcccgatctcttaattccccagcctgtcaagatataacaATgatgagatagcatgaaacAaaatttggaagcaatagagttgattcaaaaTtgatgctaagaatgaaggaataaaaggatggcttatagctatgatttagagtcactgggcaactttacaaCacaaagtgcaaaaagccaaatcaactcAataggtttacaagtaaatagcagtgccagtaatatttactataaaagatcatttaagaactttatatgatttctgcaagaagtcTAtataccttttcaaaatcttggccacgtacagccTcgttcttgtctttggttacctgtcgaagctctttgtccagctccttggcttcatcagggagctgcaacataaaggaatcatgtctttagacagaaataatacagtgaacgagactgcaacatagaataatacaatgtagtacctgtgcatgcctgagcctaacacgaGatcctgcttcatcaatcaagtcaatagccttatcaggcaggaagcgatcactgaagaaagaaagtaaaataagtttattagattgaaaatcaaatgattatatgtcaactgctgagaatttaaatcccatccaaatgttctgcaaaattaggggcatgtttggtgcacaccctaacAttgccacacaTgcgtgccaaaggtgtggctaacaaatcaatggcaacaattaggcaaggTtttgcaaaaaaagagaaaaaaaaggagtgcatgatatttggatcctagggttAaaaaattgtggcatagcgcaaatgtggcaatgaaacaaacaatagcctcatgatagtttggcaaagtgtggtagtgaaccaaacacccactagatatttttatttgcaaacTtataaccatatatcctttctagtccagaaatctgaaatggatccaagtcaatctttatgttgttcagcttcaaatagatcactgataTttaatttgcttccaggAagggatcctaaacagcatcatgcacagaatatAAcatatattttatcttccAaggcattttGacggtctaacagatAaagggtgaaactcagtaagtactatcgtagtactcagagttcacaggacactactcctggaccattaaacaatgcgcttacctgtgcaagcacctagttaccatttcagaaataagtatatgcttctcttcagAaaaaaaaaacagatatgtaaaagactaaacatccctatgcacaagagaaatatagtacggttAaaaatgatgccaattaacaagaataggtatgaattgatatagccacagtaaaggccAaaaattaataaagatgAaacatattagctaagAatgtgctgcatagcaaacctgatatactGgtatgacaattgtgctgcagcaattaaagaatcatctgtgtatcgcagcttatgatgcagttcatatcgctcacgaagtcctcTtaagatttgtattgtttcatcaacagttggctctggaaccttaactggttgaaaccgtcgctctaaagctggatctttctcaatatgtttcctgtactcatcAagtgttgtggcaccaatgcactgaagacagaagcataagaaatgtggtgaattaGgggcaaaaacaggtaacaatcatatattGttcatggataacatgcaaagtggacaaattagtctctggagtcaagaggctttgaggcaTtctccagattaaaActatAaatatgataaaaacataatcatggaagcaacagattcaaaattaggcacatatacctgcagttcacctctagcaagagctggtttcaagatgttggcagcatcaattgcaccttcagcagcacctgctccaattagcgtgtgcacttcatcaataaagagaataatgtcatcattttgtttgatttcctccataagtttcttcagtctttcttcgaactctccacGgtacttGgtaccagcaacaaggagccccatgtcaagagtaataacctaaccgagtaaaatgccaatcagtattctgaaacaatactatgataattagaaagagaagcttcacaccactcaaaatcttataaattgtgcaagtctcattcaaatcagacgatagccttgaGtcctcactggtcaggacacaataccAatgcaacaacattagttgcatcagtacacgatatcgagcgaaaagttgaattcacaattacatctggacaatgtactagagaaagctatCcagaaagctagtattattcgtAaatgcAaacttatactatAattacttgtctagttaatgaaattagcgagtttacccAaaagggtgatAaaccctggaaaaagtgtcagcatgatggtactcatttgcatgcatatatgcAaaacaatGgtgatgcacaggtgacaggatggtctaagctaaCcttctttccttcaattgtttctggaacgtcaccattggaaatacgttgtgcaagcccctcagcaatagcagtctttccaacAccaggttctccaattaggcaagggttgttctttgtccgccttcccaaaatttgagttacacgctcaatttgatcctgcctgccaacaactGggtctagtttaccctgcagatgaaaatgattagtttcttgtctttgcTtatttatctacgcaatagagaatgcacaaacaagtctgataaaatacctcttctgccagcttagtcAaattaGtgccatactcttcgagtgtaggcatcTtctggccactgcttccgccaccaactccagcaccaacagcttctgtgctttcaccaaccAttcttatgacctgaacatcatatcaaatgtcattccctgcatAattttaactgaaagtagattggctaagatttaaggaacataatagtaaagctatttacctgggtacgaatgttgtttggatcagcaCcaagactttccagtacccgtgctgctaCAccttcaCcctcacgaagtagccccAgaagtaagtgctcagatcctatatagttatgccctgaacaatAaaaaatgatgaatattagacaaaaGaccatgcatatttttctaaataactagtctcacAaggcatagattcAaaactcaaatgtgaatactttcttgaccttAgcatcaagtcaacaacaatgccattgttaccttttcactttttttggcatacttgttgtacaGTATtagtgtAataatatgcatattaataatttagtaaacAgtgccagatctgatgcatattAataagAcctctagcatcAttctaaaccagtaattattcataggagaaagaaagcatatttgtacatgattagcgattaacccaccacatgcagattctcaaccaatttagcactattattttgcatacttAatgtgaagtacgaaaattgagagcaggataatagcaatatgaaAccaaagcacatgctggTttgattggaaactagaggtatataagcaatagttcaggacAaaaaatgctataaggaaagaattAaagtgtccaattaTaAccaaatgaaactagctgaatctttgaacaaagagaggttatacctagctggcgagcttcttcaagtgacagttccaagacacgctttgcacgaggcgtgaatgggatctcaacagccacaaacccgctaccacGtccaatgatcttctcaacttccacacGggcatccttaaggttgataCccatagacttgagaacctttgccgcgattcctgtgccctcaccgataaggcccAgtagaatttgctccgtcccaacaaagttgtggcccaggcgcctcgcttcttcctgtgcaagcatgatcaccttgattgccttctccgtgaagcgctcaaacatggcgcggaccacccctcttgaccccaaccctcGggggcgtgAaatctggctcgcgacaatagagccgaagtcacgcttaatcaccgacctcgagtccaggaaattcgtctgccgcaggccctggAaaccccccagggtgagggtccgtgttggcatggtacgcatcatcgTggccctcgcgcgcacgcggaaccgcgcggtgccgctcctcctgtatatggtcggagcaatcgcggactggactagcgacccctccat
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| CDS seq | atggaggggtcgctagtccagtccgcgattgctccgaccatatacaggaggagcggcaccgcgcggttccgcgtgcgcgcgagggccAcgatgatgcgtaccatgccaacacggaccctcaccctggggggttTccagggcctgcggcagacgaatttcctggactcgaggtcggtgattaagcgtgacttcggctctattgtcgcgagccagattTcacgccccCgagggttggggtcaagaggggtggtccgcgccatgtttgagcgcttcacggagaaggcaatcaaggtgatcatgcttgcacaggaagaagcgaggcgcctgggccacaactttgttgggacggagcaaattctacTgggccttatcggtgagggcacaggaatcgcggcaaaggttctcaagtctatggGtatcaaccttaaggatgccCgtgtggaagttgagaagatcattggaCgtggtagcgggtttgtggctgttgagatcccattcacgcctcgtgcaaagcgtgtcttggaactgtcacttgaagaagctcgccagctagggcataactatataggatctgagcacttacttcTggggctacttcgtgaggGtgaaggTGtagcagcacgggtactggaaagtcttgGtgctgatccaaacaacattcgtacccaggtcataagaaTggttggtgaaagcacagaagctgttggtgctggagttggtggcggaagcagtggccagaAgatgcctacactcgaagagtatggcaCtaattTgactaagctggcagaagagggtaaactagaccCagttgttggcaggcaggatcaaattgagcgtgtaactcaaattttgggaaggcggacaaagaacaacccttgcctaattggagaacctggTgttggaaagactgctattgctgaggggcttgcacaacgtatttccaatggtgacgttccagaaacaattgaaggaaagaaggttattactcttgacatggggctccttgttgctggtacCaagtacCgtggagagttcgaagaaagactgaagaaacttatggaggaaatcaaacaaaatgatgacattattctctttattgatgaagtgcacacgctaattggagcaggtgctgctgaaggtgcaattgatgctgccaacatcttgaaaccagctcttgctagaggtgaactgcagtgcattggtgccacaacactTgatgagtacaggaaacatattgagaaagatccagctttagagcgacggtttcaaccagttaaggttccagagccaactgttgatgaaacaatacaaatcttaAgaggacttcgtgagcgatatgaactgcatcataagctgcgatacacagatgattctttaattgctgcagcacaattgtcatacCagtatatcagtgatcgcttcctgcctgataaggctattgacttgattgatgaagcaggatCtcgtgttaggctcaggcatgcacagctccctgatgaagccaaggagctggacaaagagcttcgacaggtaaccaaagacaagaacgAggctgtacgtggccaagattttgaaaaggctggggaattaagagatcgggaaatggaatTgaaggcccaaattacagccattattgacaagagcaaggaaatggttaaagcagagactgaatccggtgaagtcggtccccttgttactgaggcagatattcagcatatcgtgtcctcttggactggaatacCtgTggagaaagtctcatctgatgagtctgaccgtctccttaagatggaggagacactccatacgcgtatcattggtcaggatgaggctgtcaaagctattagccgtgccatcCgccgtgctcgtgttggcctcaagaacccgaatcggcctattgctagcttcatcttctctggaccaactggtgtcggtaaatcagagttagcaaaggctcttgcagcctactactttggctcagaagaggccatgatcagactagacatgagtgagttcatgagagctacgtctccaagctcattggacactccaggtatattggtacatgaggctgacaaagcattcgccgcgccatccgccgtgctcgtgttgcctcaagaaggaaggcctatgctagcttcatcttctctagaaatggaagactaa
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| Protein seq | MEGSLVQSAIAPTIYRRSGTARFRVRARATMMRTMPTRTLTLGGFQGLRQTNFLDSRSVIKRDFGSIVASQISRPRGLGSRGVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLGADPNNIRTQVIRMVGESTEAVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPDEAKELDKELRQVTKDKNEAVRGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTGIPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMRATSPSSLDTPGILVHEADKAFAAPSAVLVLPQEGRPMLASSSLEMED |
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| Function | Chaperone protein ClpC1, chloroplastic [UniProtKB/Swiss-Prot:Q7F9I1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0012120 | OsLaMu_04g0012120.01 | Chr04 | 20388041 | 20392731 | - | NAM | ||
| CDS seq | atggaggggtcgctagtccagtccgcgattgctccgaccatatacaggaggagcggcaccgcgcggttccgcgtgcgcgcgagggccAcgatgatgcgtaccatgccaacacggaccctcaccctggggggttTccagggcctgcggcagacgaatttcctggactcgaggtcggtgattaagcgtgacttcggctctattgtcgcgagccagattTcacgccccCgagggttggggtcaagaggggtggtccgcgccatgtttgagcgcttcacggagaaggcaatcaaggtgatcatgcttgcacaggaagaagcgaggcgcctgggccacaactttgttgggacggagcaaattctacTgggccttatcggtgagggcacaggaatcgcggcaaaggttctcaagtctatggGtatcaaccttaaggatgccCgtgtggaagttgagaagatcattggaCgtggtagcgggtttgtggctgttgagatcccattcacgcctcgtgcaaagcgtgtcttggaactgtcacttgaagaagctcgccagctagggcataactatataggatctgagcacttacttcTggggctacttcgtgaggGtgaaggTGtagcagcacgggtactggaaagtcttgGtgctgatccaaacaacattcgtacccaggtcataagaaTggttggtgaaagcacagaagctgttggtgctggagttggtggcggaagcagtggccagaAgatgcctacactcgaagagtatggcaCtaattTgactaagctggcagaagagggtaaactagaccCagttgttggcaggcaggatcaaattgagcgtgtaactcaaattttgggaaggcggacaaagaacaacccttgcctaattggagaacctggTgttggaaagactgctattgctgaggggcttgcacaacgtatttccaatggtgacgttccagaaacaattgaaggaaagaaggttattactcttgacatggggctccttgttgctggtacCaagtacCgtggagagttcgaagaaagactgaagaaacttatggaggaaatcaaacaaaatgatgacattattctctttattgatgaagtgcacacgctaattggagcaggtgctgctgaaggtgcaattgatgctgccaacatcttgaaaccagctcttgctagaggtgaactgcagtgcattggtgccacaacactTgatgagtacaggaaacatattgagaaagatccagctttagagcgacggtttcaaccagttaaggttccagagccaactgttgatgaaacaatacaaatcttaAgaggacttcgtgagcgatatgaactgcatcataagctgcgatacacagatgattctttaattgctgcagcacaattgtcatacCagtatatcagtgatcgcttcctgcctgataaggctattgacttgattgatgaagcaggatCtcgtgttaggctcaggcatgcacagctccctgatgaagccaaggagctggacaaagagcttcgacaggtaaccaaagacaagaacgAggctgtacgtggccaagattttgaaaaggctggggaattaagagatcgggaaatggaatTgaaggcccaaattacagccattattgacaagagcaaggaaatggttaaagcagagactgaatccggtgaagtcggtccccttgttactgaggcagatattcagcatatcgtgtcctcttggactggaatacCtgTggagaaagtctcatctgatgagtctgaccgtctccttaagatggaggagacactccatacgcgtatcattggtcaggatgaggctgtcaaagctattagccgtgccatcCgccgtgctcgtgttggcctcaagaacccgaatcggcctattgctagcttcatcttctctggaccaactggtgtcggtaaatcagagttagcaaaggctcttgcagcctactactttggctcagaagaggccatgatcagactagacatgagtgagttcatgagagctacgtctccaagctcattggacactccaggtatattggtacatgaggctgacaaagcattcgccgcgccatccgccgtgctcgtgttgcctcaagaaggaaggcctatgctagcttcatcttctctagaaatggaagactaa
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| Protein seq | MEGSLVQSAIAPTIYRRSGTARFRVRARATMMRTMPTRTLTLGGFQGLRQTNFLDSRSVIKRDFGSIVASQISRPRGLGSRGVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLGADPNNIRTQVIRMVGESTEAVGAGVGGGSSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQDQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRISNGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILRGLRERYELHHKLRYTDDSLIAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPDEAKELDKELRQVTKDKNEAVRGQDFEKAGELRDREMELKAQITAIIDKSKEMVKAETESGEVGPLVTEADIQHIVSSWTGIPVEKVSSDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMRATSPSSLDTPGILVHEADKAFAAPSAVLVLPQEGRPMLASSSLEMED
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.323463 | 46.773777 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0397100 | SBH | 69.505684 | 79.215240 | 47.178692 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32560 | RBH | 34.504452 | 33.979740 | 9.835762 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0397100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011770 | RBH | 12.594346 | 65.080940 | 40.720692 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012570 | RBH | 6.552412 | 21.388054 | 22.731256 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012260 | RBH | 28.697956 | 58.643864 | 67.618332 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011920 | RBH | 4.540253 | 2.551700 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012180 | RBH | 127.344398 | 73.555962 | 129.710510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0310100 | RBH | 60.211695 | 96.0202405 | 144.31036 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011100 | RBH | 10.770543 | 6.223584 | 11.339029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0307300 | RBH | 88.637329 | 94.090332 | 61.032501 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011760 | RBH | 5.800228 | 0.949617 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011370 | RBH | 13.205211 | 56.648605 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011380 | RBH | 97.839462 | 59.877819 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011870 | RBH | 22.405273 | 5.753179 | 14.646758 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011290 | RBH | 9.487787 | 24.325827 | 20.686129 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011280 | RBH | 50.819958 | 163.419556 | 88.312851 |
