Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_04g0008060 OGI:10002700 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr04:15224391-15226377
Gene Symbol -
DNA seq

atggatctggatgaacctccagccatggaggaggagcaggaaacaaatcaagtccctcttccagatccagaaattactacttccctggaagccatgacaataacaccaagaaaggagattagagtcaagcttcagcagtcgcctgaaactgcttcagttcagggattccataatctcctcatgaaggtgggctactcaggtggacaacagaggcagatccctttagaagccttgaggaagtcaatggcaaaagcttggcaaaaagtctatttggacatctctcaggtagaaaacaatctcttcatggctcattttcgcacttatgatgatctttcctgggtctggcagaaacaaccttggtcttttggcagtgaagtttttctgttcgaatgggtctctttagatgataagattaagcctatgtctgcctatacttttaagcatcttatggtgaatgttcgtatctatggtatcccctcaagtcttaaaaatgttgagaatgtgagattagcagcaggggttataggtcagatttctaaagctgagcccattgatgaagatagcctgcataagaatgataagtttgtgtcggtcagaatcaggttagatgttaacaagcctttgccagatcatgttattcttgaacaacctggaaaatctgatcttaaggcctatcttcattacgaaagaattcctagaatctgcactttttgtggtctcctgtttcacaatgttcaagtttgccctcagagacagaaaattgtcattcagtttcctgatgccactgaagagaatctcaaggaaaatctaggaaaatggattacccagttaaattatctCcccccccagctgcctttgtggatattgaaaaatctaaccgaaattcaatagttgataaatttaggcagcatttTTCttctcctcagcacaagaacatacaaggccaagagaagcatctcgagcttgcttgtggggccaaacagaaacatactttgccaaggctcagtcagaatcctttgactttaagggaacccagtacagagaaaagaagccaaagtctaggtgttcacactatcagggttgatactgtgcacaaggagaaggaaaaaggggatcagcagtttaaagaagctgcagaaaaaagggctgtatcagaaacgcaggtacacggatctacagttcagaagaaactgacatttggtgtaccacaggagcatgtaagccagaacccagagaatgtgggtactgtcagattgatgcgccagactggaactaatagatttaccagaactattcaacacagcactcctagcataaccatgcatcatagtaacagaacgggttctactaattacaacaaagagatgcatggcaagacaaatcccaaatcctcggcctttatgaatcaagacaaattgtccgagctgccagatctgcatttaaacaagaaaagggctctagatgaatcaattctaggtgctcacaaacgccattgctctccaactacctcaacagcttcctccttttcatcaataggtggtaatgagcatggaggaatcacctcacagggaaaacctacagttagtgatcattcaacagttagtcgaaatgcaagcaaaaggagtggatcaagagcttcaaggtgggatcagggaggaagctttggaggtggggtggcaaaccccattccttgggggactgctgttgttgcttttgagggtgccaatcaaggagatcccccaaaatccactgaaagtgctcacagtgatcatagaaggcagcatccttggaataatctggagaagatgcataatgccattgttgctcaagatgttggagttgatgaaagaagcaacttagaagttggtggatccaaatcacatttgtctacaggtatggataataaggccggtaggactgattcttatgtacccaatcagctgtcttctgtgggaaaacaggttgtatgcactggcacttatcttga

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CDS seq

atggatctggatgaacctccagccatggaggaggagcaggaaacaaatcaagtccctcttccagatccagaaattactacttccctggaagccatgacaataacaccaagaaaggagattagagtcaagcttcagcagtcgcctgaaactgcttcagttcagggattccataatctcctcatgaaggtgggctactcaggtggacaacagaggcagatccctttagaagccttgaggaagtcaatggcaaaagcttggcaaaaagtctatttggacatctctcaggtagaaaacaatctcttcatggctcattttcgcacttatgatgatctttcctgggtctggcagaaacaaccttggtcttttggcagtgaagtttttctgttcgaatgggtctctttagatgataagattaagcctatgtctgcctatacttttaagcatcttatggtgaatgttcgtatctatggtatcccctcaagtcttaaaaatgttgagaatgtgagattagcagcaggggttataggtcagatttctaaagctgagcccattgatgaagatagcctgcataagaatgataagtttgtgtcggtcagaatcaggcagcatttTTCttctcctcagcacaagaacatacaaggccaagagaagcatctcgagcttgcttgtggggccaaacagaaacatactttgccaaggctcagtcagaatcctttgactttaagggaacccagtacagagaaaagaagccaaagtctaggtgttcacactatcagggttgatactgtgcacaaggagaaggaaaaaggggatcagcagtttaaagaagctgcagaaaaaagggctgtatcagaaacgcaggtacacggatctacagttcagaagaaactgacatttggtgtaccacaggagcatgtaagccagaacccagagaatgtgggtactgtcagattgatgcgccagactggaactaatagatttaccagaactattcaacacagcactcctagcataaccatgcatcatagtaacagaacgggttctactaattacaacaaagagatgcatggcaagacaaatcccaaatcctcggcctttatgaatcaagacaaattgtccgagctgccagatctgcatttaaacaagaaaagggctctagatgaatcaattctaggtgctcacaaacgccattgctctccaactacctcaacagcttcctccttttcatcaataggtggtaatgagcatggaggaatcacctcacagggaaaacctacagttagtgatcattcaacagttagtcgaaatgcaagcaaaaggagtggatcaagagcttcaaggtgggatcagggaggaagctttggaggtggggtggcaaaccccattccttgggggactgctgttgttgcttttgagggtgccaatcaaggagatcccccaaaatccactgaaagtgctcacagtgatcatagaaggcagcatccttggaataatctggagaagatgcataatgccattgttgctcaagatgttggagttgatgaaagaagcaacttagaagttggtggatccaaatcacatttgtctacaggttgtatgcactggcacttatcttga

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Protein seq

MDLDEPPAMEEEQETNQVPLPDPEITTSLEAMTITPRKEIRVKLQQSPETASVQGFHNLLMKVGYSGGQQRQIPLEALRKSMAKAWQKVYLDISQVENNLFMAHFRTYDDLSWVWQKQPWSFGSEVFLFEWVSLDDKIKPMSAYTFKHLMVNVRIYGIPSSLKNVENVRLAAGVIGQISKAEPIDEDSLHKNDKFVSVRIRQHFSSPQHKNIQGQEKHLELACGAKQKHTLPRLSQNPLTLREPSTEKRSQSLGVHTIRVDTVHKEKEKGDQQFKEAAEKRAVSETQVHGSTVQKKLTFGVPQEHVSQNPENVGTVRLMRQTGTNRFTRTIQHSTPSITMHHSNRTGSTNYNKEMHGKTNPKSSAFMNQDKLSELPDLHLNKKRALDESILGAHKRHCSPTTSTASSFSSIGGNEHGGITSQGKPTVSDHSTVSRNASKRSGSRASRWDQGGSFGGGVANPIPWGTAVVAFEGANQGDPPKSTESAHSDHRRQHPWNNLEKMHNAIVAQDVGVDERSNLEVGGSKSHLSTGCMHWHLS

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_04g0008060 OsLaMu_04g0008060.01 Chr04 15224391 15226377 + NAM
CDS seq

atggatctggatgaacctccagccatggaggaggagcaggaaacaaatcaagtccctcttccagatccagaaattactacttccctggaagccatgacaataacaccaagaaaggagattagagtcaagcttcagcagtcgcctgaaactgcttcagttcagggattccataatctcctcatgaaggtgggctactcaggtggacaacagaggcagatccctttagaagccttgaggaagtcaatggcaaaagcttggcaaaaagtctatttggacatctctcaggtagaaaacaatctcttcatggctcattttcgcacttatgatgatctttcctgggtctggcagaaacaaccttggtcttttggcagtgaagtttttctgttcgaatgggtctctttagatgataagattaagcctatgtctgcctatacttttaagcatcttatggtgaatgttcgtatctatggtatcccctcaagtcttaaaaatgttgagaatgtgagattagcagcaggggttataggtcagatttctaaagctgagcccattgatgaagatagcctgcataagaatgataagtttgtgtcggtcagaatcaggcagcatttTTCttctcctcagcacaagaacatacaaggccaagagaagcatctcgagcttgcttgtggggccaaacagaaacatactttgccaaggctcagtcagaatcctttgactttaagggaacccagtacagagaaaagaagccaaagtctaggtgttcacactatcagggttgatactgtgcacaaggagaaggaaaaaggggatcagcagtttaaagaagctgcagaaaaaagggctgtatcagaaacgcaggtacacggatctacagttcagaagaaactgacatttggtgtaccacaggagcatgtaagccagaacccagagaatgtgggtactgtcagattgatgcgccagactggaactaatagatttaccagaactattcaacacagcactcctagcataaccatgcatcatagtaacagaacgggttctactaattacaacaaagagatgcatggcaagacaaatcccaaatcctcggcctttatgaatcaagacaaattgtccgagctgccagatctgcatttaaacaagaaaagggctctagatgaatcaattctaggtgctcacaaacgccattgctctccaactacctcaacagcttcctccttttcatcaataggtggtaatgagcatggaggaatcacctcacagggaaaacctacagttagtgatcattcaacagttagtcgaaatgcaagcaaaaggagtggatcaagagcttcaaggtgggatcagggaggaagctttggaggtggggtggcaaaccccattccttgggggactgctgttgttgcttttgagggtgccaatcaaggagatcccccaaaatccactgaaagtgctcacagtgatcatagaaggcagcatccttggaataatctggagaagatgcataatgccattgttgctcaagatgttggagttgatgaaagaagcaacttagaagttggtggatccaaatcacatttgtctacaggttgtatgcactggcacttatcttga

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Protein seq

MDLDEPPAMEEEQETNQVPLPDPEITTSLEAMTITPRKEIRVKLQQSPETASVQGFHNLLMKVGYSGGQQRQIPLEALRKSMAKAWQKVYLDISQVENNLFMAHFRTYDDLSWVWQKQPWSFGSEVFLFEWVSLDDKIKPMSAYTFKHLMVNVRIYGIPSSLKNVENVRLAAGVIGQISKAEPIDEDSLHKNDKFVSVRIRQHFSSPQHKNIQGQEKHLELACGAKQKHTLPRLSQNPLTLREPSTEKRSQSLGVHTIRVDTVHKEKEKGDQQFKEAAEKRAVSETQVHGSTVQKKLTFGVPQEHVSQNPENVGTVRLMRQTGTNRFTRTIQHSTPSITMHHSNRTGSTNYNKEMHGKTNPKSSAFMNQDKLSELPDLHLNKKRALDESILGAHKRHCSPTTSTASSFSSIGGNEHGGITSQGKPTVSDHSTVSRNASKRSGSRASRWDQGGSFGGGVANPIPWGTAVVAFEGANQGDPPKSTESAHSDHRRQHPWNNLEKMHNAIVAQDVGVDERSNLEVGGSKSHLSTGCMHWHLS

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g30310 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0010110 RBH 0.0 0.0 1.977255
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0010880 RBH 0.0 0.0 0.204246
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0010270 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0007950 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0007700 RBH 0.0 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G029020 SBH 0.0 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0040230 RBH 0.0 0.0 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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