Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0004780 | OGI:04025330 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:7567301-7570760 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gactgtcaaaattaatagtagatttaatttcaataagcttgccacatgacaagttcatcagtgtatcaagtcaacaaaaaggaaaaatggcacccccatgcatattaacttacagtagtattcaaatgcatattaacttacagcttcttttcaagctttttttgttatctcactggccgcaagctccTttttcttctcataatccttcttagacagaccctgccatgattatcaggactgaataaatattccttggtctctcataattcaaagtagaattagatggcagctagaacacatccatacctctcaatcttctatccctgcagttgtaaaaatatgaagtatacaatgttcttcaggatacttacaaatatgcttccacaaggcttctccaaattagctcagtcatcctgccaattgcactcagagtcttagagttaagttattttagactcaaagctgtactcaactttgccattttccaaaataatattggtcacattagccttgaatatttcactaatttccctgaagtggctatcgcactagacctgctgttttgcccataggatagcagaagtttaaataaacaaactaaaggcaaacaaatatggagcaacctaaccttcctcttcgcccttcagtcctccaatcaaaattttacatataaattgcataaaacaagaagaataatacacaactataatatccataaacaagaaaacttaacggaagaataatatacaactaaaaattccacagacttcacggaagaatctcagccctcaaaaactcccttctattctatacaatgttcaagcaaaactctttcaactgaccatcctaaatgaaaggggcaagcttcccaatgaacagtagacaccagacagcttctctgatattttccttgcacaaatcaacagaagcattgttaaccttcggagcatagccacacacctttattttgcagttatctcatcaagcttcagaaggatcctttcatttccaaaattttttcacctccaactgcaaactgatgaacactgccattcagctccatccaactgcaacctttcttcttccacgtcccctggactttcattactccccttacctccttaacatcattccagtttccatattctgcatatatatttgataagagcacttgtgctccaccatgattagggtccaactccaaaaTtttctttgcagcaaacgcgccgagctcaagatcaccatgcatccggcatgctgctaacaaagatccccaaatgaccacatttggtcttaagtgcatggactgtatcaggtcagcagcttgtccaagaagttttgctcttcccaaaagatccaccatacaaccgtagtgctcatgcataggctcaatcctgtattgctggaccataattttgaacaataaacggccttcttcaactaaaccagcatgacagcaagcatagagcaacccaagaaatgtcactccattgggttgaataccttcacttttcatgttctcaaaaagggttaaggcggatcttccatcaccatgcatagcagatgcagtaattatgcttgtccaggtgacaacattcttttgaggcattgcattgaagacatccaaggcaagagttaaactcccacatttggagaacatatcaataagagcatttccgatgggtaatatcttacacatgctatgattctccacgaaggaatggatgcatctcgctttatcaagggcaccaacattagcacatgcagatattacactcagcatggtaatttcatcaggtttgacaccactccgttgcatatcatggaacaaattcagcgcttccataggtttgctgctttcagcatatcctgctatcatagcactccaagatacaacgtccttctctggcattccattgaatatggagtgagcaatctcaacttttccattcttggcatacccatacaccatggtggttgataatacaatgtccttttctgacaccctattgtacagcttttcagccatttccatgtctgcacaactagcatacatgttcatgagagcacagctgacttgagcatcaataagagcatctgacaccaacatgtatgagtggatagcctttccaaatctcaagtttcttgtatgagcacaagttgaaaggacagtagcaataatcacttgatcaggaacaactcttgatctcttcatgctatgaaaaagcaacagggcttcttcatagtttcgggcctgacaataactgacagggtgatgttagagaggtttatcataactatagtgaaaagtccaattaacatattatacagaagtataaaaaataacagtagaaaaaatattagcacaaaacaaatgtatatatgtaaaatggtttgcaaaatacttcagagttgagctggattagaaagaaatgtttctccacgtgccccttgaatttcagcacgtaacacagagatctagaggaacccacatataaatgtatgtcaaaaatctcaagtagaacatgaacagtgatgttttaaaaacgagaagttccaaccttctaggcttctactggttccccatgtctactcaaaatttacaagttgcattgctgcaagctgagtaatttcataggtcgaggtgatttcagtttatatatttttccccacaaaataaatcagtatatattttaagttccacattatttctgactatgccaagactgattctgttccaatcaggatttgaaaatttcactcttgctcggtgatgataagattgagtatatggttccgatggccttaggacatactagttggactcgctctgacatacagccatgcaaaacgttctccgatgtaccatgcattgaactctcaactaagcacaagcaactgaataaaccattttgcaggcagccaggcatacacagaacatgatacttatgagatagatcaaacaactaggattccatacgattgcatgaagaaatggagctgttcacagtgcgttaccagtcaagcatgacgccccaggcgacgaggtcccggtcaggcatcccatcgaacaccttgcgtgcgtcctccacacgcccgcacgccgcgtaggcccggaccagcgcggtcccgacgaagccatcgacctctgccccgaccctaaacgcgagaccgtgcgcggcccctgcggtgccagggaaacgcgcgagcgcgatggcacggagaagggacgggagcgcgcggcgtcctggcgcgggcaggcccacgcggcggaggcaagcgaaggccgcgagcgctaggcgcggcgcggtggccgcgcggatcgcggagatgtaggcgcgatcgaggtcggggtcggggtgagccgccggcgggaaggggtggccgcggcggaggaagtgggcgtggagctctccgagttggcgggaaaggcgctctcgaggctgcattggggcttggc
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| CDS seq | atgaagagatcaagagttgttcctgatcaagtgattattgctactgtcctttcaacttgtgctcatacaagaaacttgagatttggaaaggctatccactcatacatgttggtgtcagatgctcttattgatgctcaagtcagctgtgctctcatgaacatgtatgctagttgtgcagacatggaaatggctgaaaagctgtacaatagggtgtcagaaaaggacattgtattatcaaccaccatggtgtatgggtatgccaagaatggaaaagttgagattgctcactccatattcaatggaatgccagagaaggacgttgtatcttggagtgctatgatagcaggatatgctgaaagcagcaaacctatggaagcgctgaatttgttccatgatatgcaacggagtggtgtcaaacctgatgaaattaccatgctgagtgtaatatctgcatgtgctaatgttggtgcccttgataaagcgagatgcatccattccttcgtggagaatcatagcatgtgtaagatattacccatcggaaatgctcttattgatatgttctccaaatgtgggagtttaactcttgccttggatgtcttcaatgcaatgcctcaaaagaatgttgtcacctggacaagcataattactgcatctgctatgcatggtgatggaagatccgccttaaccctttttgagaacatgaaaagtgaaggtattcaacccaatggagtgacatttcttgggttgctctatgcttgctgtcatgctggtttagttgaagaaggccgtttattgttcaaaattatggtccagcaatacaggattgagcctatgcatgagcactacggttgtatggtggatcttttgggaagagcaaaacttcttggacaagctgctgacctgatacagtccatgcacttaagaccaaatgtggtcatttggggatctttgttagcagcatgccggatgcatggtgatcttgagctcggcgcgtttgctgcaaagaaaAttttggagttggaccctaatcatggtggagcacaagtgctcttatcaaatatatatgcagaatatggaaactggaatgatgttaaggaggtaaggggagtaatgaaagtccaggggacgtggaagaagaaaggttgcagttggatggagctgaatggcagtgttcatcagtttgcagttggaggtgaaaaaattttggaaatgaaaggatccttctga
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| Protein seq | MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALDKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWMELNGSVHQFAVGGEKILEMKGSF |
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| Function | Pentatricopeptide repeat-containing protein At4g14820 [UniProtKB/Swiss-Prot:O23337] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0004780 | OsLaMu_04g0004780.01 | Chr04 | 7567301 | 7570760 | - | NAM | ||
| CDS seq | atgaagagatcaagagttgttcctgatcaagtgattattgctactgtcctttcaacttgtgctcatacaagaaacttgagatttggaaaggctatccactcatacatgttggtgtcagatgctcttattgatgctcaagtcagctgtgctctcatgaacatgtatgctagttgtgcagacatggaaatggctgaaaagctgtacaatagggtgtcagaaaaggacattgtattatcaaccaccatggtgtatgggtatgccaagaatggaaaagttgagattgctcactccatattcaatggaatgccagagaaggacgttgtatcttggagtgctatgatagcaggatatgctgaaagcagcaaacctatggaagcgctgaatttgttccatgatatgcaacggagtggtgtcaaacctgatgaaattaccatgctgagtgtaatatctgcatgtgctaatgttggtgcccttgataaagcgagatgcatccattccttcgtggagaatcatagcatgtgtaagatattacccatcggaaatgctcttattgatatgttctccaaatgtgggagtttaactcttgccttggatgtcttcaatgcaatgcctcaaaagaatgttgtcacctggacaagcataattactgcatctgctatgcatggtgatggaagatccgccttaaccctttttgagaacatgaaaagtgaaggtattcaacccaatggagtgacatttcttgggttgctctatgcttgctgtcatgctggtttagttgaagaaggccgtttattgttcaaaattatggtccagcaatacaggattgagcctatgcatgagcactacggttgtatggtggatcttttgggaagagcaaaacttcttggacaagctgctgacctgatacagtccatgcacttaagaccaaatgtggtcatttggggatctttgttagcagcatgccggatgcatggtgatcttgagctcggcgcgtttgctgcaaagaaaAttttggagttggaccctaatcatggtggagcacaagtgctcttatcaaatatatatgcagaatatggaaactggaatgatgttaaggaggtaaggggagtaatgaaagtccaggggacgtggaagaagaaaggttgcagttggatggagctgaatggcagtgttcatcagtttgcagttggaggtgaaaaaattttggaaatgaaaggatccttctga
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| Protein seq | MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALDKARCIHSFVENHSMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWMELNGSVHQFAVGGEKILEMKGSF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.085698 | 1.268149 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0221300 | RBH | 1.777679 | 0.882618 | 1.719325 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14450 | RBH | 0.808424 | 0.546830 | 0.343963 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0221300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004760 | RBH | 0.278198 | 0.000000 | 0.415219 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005400 | RBH | 0.0 | 0.521536 | 1.035100 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004990 | RBH | 0.754464 | 3.600263 | 3.855356 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004810 | RBH | 0.068623 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004700 | RBH | 1.100990 | 6.687447 | 3.575495 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0114300 | RBH | 1.4476615 | 6.306316 | 3.377672 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004790 | RBH | 0.046923 | 0.089958 | 0.427393 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0122000 | RBH | 2.2309415 | 10.88756 | 17.0391045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004870 | RBH | 0.216827 | 5.787119 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004640 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004510 | RBH | 0.107919 | 0.302272 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004720 | RBH | 0.218898 | 3.194929 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004920 | RBH | 0.400676 | 0.959254 | 1.303615 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004630 | RBH | 0.650296 | 0.0 | 1.116372 |
