Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0003320 | OGI:04018410 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:5041873-5052502 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcgtgataaaaaagttaaaatatgctttctttgcacgtcttctttcaacattgtacaacggcgcataaaaactatacaaagtctatttaaagtacacatgtacatcacatatcttacacaatatcgagcacacaagacttgctaaccacaaacttttccaaaatcatgtacgtaagatcattccttgtgttgcataactggaatcgcagtctcaacattcataacacaagcaatcctcttcctttcaactcgccccaatggctagCccagtaaggatcctgaaacaaattctcattgttgaccatgagatgtcccagtagatgagtaccacttctcaaccatgctgttcttCccaaaattcgtattggTttgaaactgttgcggatcataggtccaacggaggtgtttcctgttacatggcatggcctgtcAacctcaactttttcatatcataagttacatatcaccactaGAGaacagatctctttcgtggtaaaaaaacacaaatttctcggatctataatctttagtgaTtttagttatatcactactaaagatgTtttttaataccGgttggtaacaccaacggtacTatacaatctttagtaccggttggtaataaaagatagtttttaagtcccggttcaacattgtcaaaccgtgtcaagccgcccctcaggatctttagtatcgaTtggtgtgactaatacttgttccagttgatgttaccaactgctactaaagattatgttgatctgtagtaccgattggtgttaccaaccagtaccaaagctcatttcccTtttatatgccttcttcctcctctagctcgaaccattgttgccaagaggaggaagagaagtgctgccaaatttttttggaaagtatttggtgatattacacgaatcgaaaggatctaaaaggttagcaaTttcatcctctattgatgtatggttaacatattacaTttctagctatgtttctacacatttctctcacaaaaagttgtggAaaaagaggagagaataaacttttagagaaaataagagtactttagaattttagagacattggatgAaaatgttaaaaaaaaagacaacaaaggaaaattatagaaaatgaaggaataagaacagaaaactaagtccatttttttttaaaaaatagttagaaataagaatataTtgaaaatatgctcagaattttaaaaaacttctaaaaatagttaaaataagtataatacatgAaaaaaaatacttacaattttataaaacttctagaattTAtatataattaaccatagctctgattaagtccatttaaaactcattaaaatcactagaaataagaagaattcattgaaaatgtttttagaattttaaaaaagataatacatgaaaatgtatatttacAattatgatgttttaaattattaaatgcTtatttaaccattttcaccttcgtcgacttcgtttacatggccgatgcatctacatgaaataaataaatgtaaaggaagtcgaggaaggtgaaaataatctttagtatcggttggtgacatcaatcagtactaaagtgttgatccttagtaccggttgatctttaatccctaaggatctgactcggtctgacaatgttgaaccgggactAaaaacaatgtttagtgattgtacagtactagtggtgttaccaaccggtactaaataacatatttagtatggttggtaatagatctgagaaatttgtgttttttggtaccacgacaaaagattagttctccagtagtGatagccaatacttgataattgtgacaaaaaaaagcaagaaagcaaaaatagttatcaacaatctcacacagaataaagatatTgtttgacaacagcgaatagttgataattgtgaaaacaaaagcaggaaaaGaaaactagttattaacaattttagtcatcaaaataattattattcacaagtagtgacggattttaccttgtgcagcaggtcatgtgcaatgtagtcccaaggaagagatactgacatcaagcaacattttagaggcagaagctcAtcatcaaagcgtttgttggtagatgcagcctcgtaggcatgctttgctagttttgatgcagtagatgctgcactatggacaagggcccgaaagctatttcctggatctttctttgatctctcatggctctgatctggtagaagacaatcattcccgtgtgagagtttgatggatcaacaacttgcactagagctacagtaacccAaaaagtgaatgtgcatgtctggggtggggcagtaaggatatttggaagtagttctaatgttgtacatttgttatagaatgcaaaatgcaaactataacctagcattgcaccaaaaagtgataacttgtagagaaacaaacatttcaacaacagtatAaagatacgacagtagtttaccaattaccatagcaatatatgtgtgtcattattttaactgagtcccaaatccattctattagaactactcattacagataatgcatgattgcatgtcacagcatgataattatggcactgatgatttgggactctcagactaaccataactgacctgctattccagaaacagctacttcaacttctccacgtccttcagggcccctcatataaagtttatcaagtttagtgcggtcatgcccgagtgagaataagctctcaaattttgatctgccagctataacaggatatcagaaaatgtgaaacctacaaggaatgaaatgttaggtacctacaaTttttttaaacaggaaatccactagttgagcaaagggttgatgcagttaaaaccagtactatcaaacatatgattctattagatttagctatggaggaagAaatatgttgacaggaatattaatcatgtgacaatagtttctgtgcagataaagttgaaaggaagcaaatacttcagaagaccaactgaacaatagtttccttggaaatacttagatggacgaaagactaaccatcataagcttctcgaacgttttggtagctgacgtagcctgaaaagagagttctctgcaataataatcacagaagccctatgtaggtgagAaactcattaatattgtatgacattatacatcataaagttgtgttgcagaagcagatatcttctaaagcgtaactatgctttgaacaagagtgatgccagtaggcagagagaacctgtcaatagttctaaatttatattaaaataattaggagcatagtgaaagatgtgcacaactgagaaggcacgactgagcaagccctccaaagcatataaaatattattatatctataaaactagAaaaggttgaggtgccaagaaaatactactttactatggcactgataatatGgggcctgaaactgttgtccttgtgaccacaataaattaccagttgccaacaaccgaagtttaacaagactcttatgggtttgaacaaatgctcacagttttaaagtagatcggttttaaatgaatgatcacagtcttaaagatatgatggatttggcactcaattactaccggaaacaagaaagtactgcagatcggtaatgtttaacaatgcataactcttttaaaaactgattaaaacttctgatcttatgtgacattatctAaaaaaatgcaagatgtgataacatatatttctaactgcagaactactcacaacaaaaaaagtgatttgaagttctttccatctgaaaatggtactacAaagaaacctgcatcgtatgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagaacctttggtggtttttcttgtttgctcccagtgTttaccccagatagcacatttgagctaggatttttcgattcagtgttttcaggaaatgctgccccatcatgtgcattgagaataacAcagtagcaatgttcagggtctgatAaaacctgctaaaatttgaatgaccacgttaatcattagggttttcctatagagtatatatatgaaaacaatgaaaacaatgcaatattaaagatacatccatatgacaacacttgttagaacgctgaacactatctcttctactagggggaattaaatgggaacttacaactgcatcaaaggtatcatcgaagtcatcaattgagaaacaaatattggggtatgcaggtaccgtttctactgcctgttcaaagaaacaagaatgtatatagaaaaaccatctcttttaacagaaaaggccagaaaaaaaatcaccttccttcgatcaagatgaaaatttacgcggctcGgggatgcatacacagtttttgtgacctgttttgataagacaatgagtttgagatggaattacttaacactgagaacatgttaaactttagctagggtagatagcattgcaacaatgaaatacagaagttaagagttaaataaaatggaacaactctttcagagtcaggttcatttcaacccaaggcttggaagaataaagaaaacccagccaaatgatcacacacgaggctttctgcagtccttgagggcaggaggtaccataatcctagcagtcaaatacacaccatctaatggctggaaaggttttgtaccgcccgccacgacggcctattgagagcaggtaccaatctatttctaatggtgggagggtaacatggtaatttcgcatcaactatttctccccatccaacgacattacctccttggctctgcagctcatgcgctgtctccccgtcttccctctcctgccgaccatcgcccacctttgggacagacatggccgccgccgatgtcaggggtgccagatatggccgagggcggcggtagctgggaggcttcctcgatttcatgggcggcctaacaacgagaacgatgagcagacagtgacagcgatgacctttgcgtggcagatgtggcagtggaccggctcgacgaccttctgatgcgctaggaggagagagcagggaacgtgggggcaggtgacggcagggacctccctccaccctggtccactcccatcgccgctggttcagtactgagctgagaccccactgacctctcttcctctttattttttgtttgttgctatgaattttgttgttgggtttgctgaaccaaacgtaaatagctatatgctggaataccagattacagtggaattggcagttttatattgatgaactataaaaacaagatccagagcttggatctgctgtaaataataggatatcgattcatgagaaagtcttgttctttgagttacgcattatttttcctcatccagattcctccctctgttcagatcaaagcagcagactcaaattgggtgccatcatgtgcattccccttgcaaggcatcctccctgatcctctgatcccattcccatgtctgtcgtgagaaacggatatagatacctagcattgctatttttaacttttggccatcatcctcccagcaaatcaatggttagatttgaatggtacccgtcattaccttgtacctggtggcacctcttaaggatggtaaaatcctctaaacacacagaagcctgatccagtattgtctgtgttctggactgtttagctccaaaacaggtgaaacaaaatttaaaggagttgcaatatgcagatttgaaccagcatctttgtctttcaatgtaggaaggaatcaagtggataggaccattgttcgtaagaaacaatactaggtattagttggcaaacaactcgaatagctgttaatcttttaaaggattttctcaagacaatttaatgttaccttcatcagactgtgttcctacagaaaaacctgactagtgaaccaagaaatagccagttcactcactggcctggtttaaaactgtggataaaattatggaatgttctgaaacaatgaatatataagtagtcatgaaacaaagctcaacattaaacatcacgagtaagtggcacagaatgcttacttgtacattaccttatAaactggtgataatggtttgcttttctctgcacggttgcaaagatccatgatactgtacagtagatcataagaaacacaattgttgaataataatttgctatatatatcaactaaggaggaacatatgacacaatcagaggtctcagtttgtgtgacaatggatattgttgcactccaaatatttgtgagtacccccccccccccccccgccccaaacacccacacacacaatgatgccagtataaattaataacgaaagatatctgactagttctgtaagttagaaggtaacctagatccagttcacaactgctagagcggggaagaaacagaaaatagaagcataaaactagtacagacaacatgtggcaacagtgtcacatttgagcaaaggaaggataagaatttaagagaatatacaggcaacttttttactgacagattagaagtttagaaccattaagttgcacattagaaaggatgtgcatcactagatcaccaaataaacttttccttgttaacataaataactgaatgccaatcattcaagataaatactaggtaaaTtttgctacaagacatcgtgacttcacgattttagctctaggacaccgcacggaatgacttttggggtaatacactctataaatgtggtaatttgccaagggacactgcacccattaaaataataactttcgctggaaggagagagaaaaatagcgcgaaatgtcaagaatacccttggacccacatgtcagctctcccatctctcttctctctatcccccccttccttcccacgcttccctgcgccagtccgccaccactcatcgattcctcgcgctctagcccgccgccaccacctcccgccaaagctgcttgccgcctcctcacgtgcgcccgccggacatccgagcgccgcaggtggctccggatgcgcgccctaccccgccgcctccgaccgccggacagctagcgccgccactggttcagggcgcgcgcgactgccGgacatccgagcaccgccgcctcctcgatgctggcaaattaatcgagattcgctatagatgTttttctctcgtggcaagaagatggataatcaaacagacctccaaaattaacagctcataggcggaccatggacacctggaccatgacgagctcccacgtgagctcgaacaccttggcggagatggcgagcgcgcccttctgcccgttctgcgtcgcctcgatgctcacctggcagtccttggtccgcgccatgaagctcaccatgccggcgatctcctctagcttggcgatgatgtcggccaccgacgcgccggacacgaagcgcatcctctcgccgcgctcctggaacagcccggacaggtcgaagctcggcgacgatgcaatgatgtcgaacgcgtttaggatcttgggccgcggcatgcgcggacactggacacagtcgtggcagtacgcctccccgacgtggcgtcccctgccggcgggcgtggtgccgaggtaggcgcacggaacacgttgttggtcaggtcggcgaagcgcgtcgccagctaccaccggtgagccgtcccgtggcgccaccttgtccgcatcgccggcaaacccatctgtggcatcgatggaggagacatcgatggaggagacagagagacaagagagatgggagagctgacatgtgggtccaggggtatttctgacatctcatgcggtttttctctccttcaaacgaaaactattattttaatgggtacggtgtctgctggcaaattaccacgtttatagagtgtattcccccaaaagccatttcgtgcagtgtcctatggctaaaaccgcgaagtcacgatgtcctgtagcaaaatttgcctaaatactaaatacaaaacatgcaggatatcttgagagatttgttgcagaaacattacctgcatattgcaactgtaacagagtatgacgtgtgagcaattaaattcaaatagaatgaacgttcccaattgacatcagctaaatttatattggtgatcttttcaagctgctccacataaaacaaaagaggccaaatagaaaatcaagacagtatgtataaatgtagtataagaaattgttgagctcatgctctagaaagtatgttatgaaccaaacactagcttatgaaagtaaatttaccaaatttaagtctgtcaaattgtggcagacaatcaagtacatgctaaagaaatgcagtataagacttgctggtgcaagtgtaaatgtgcaatgaatgataaatattattggaaagaaacatgaatgaaaaaatatgttatggttgacaatacatgatgatgtagttcatcttgatacagtttcaaacagaataactcaacagtaaattacagagaaattccaaaatagaaagaagtcttgaaattttccttctaccaaaagggacacatgcatttattgatcaagttaaacaaatagtctagcttaatttaccttaggagcccatcttcgcacaaaaaagggaggtggattttccatgttatcactggacctgtacccgttcaatttctgcaccaacatagaatattgagcttcagttagcatacaagaccacaccgtcaagctaaataaggggaatcaatagattgaaatgtaccataTtattaacaaagaagacaaggtcatcctcttccctcccctttgaaaccctaccatgcacgaagaaaagatcaagtatttcatgccagaatttatcatccatttccacgtctgatgcatcagcttcagcatcaataactgtccagccgatcaaatctgaatgttttttcaccatactcagcagtttgttcctAaaaaaaagtacaggacagaaagttgagcactggttaaaggatataagttttcgcagaagatgaagatatgcttaaatagaacaaaatcaaatctcttcctatttccaatgcattaccactagggagataacttagctctgaccagcatcattgggtggtatgtgttacagtggggtatgatgttgtcctttttttttcagcggaagtcacaagaatgatcattttggtcatgttttccttagcaatgggatcaagagcgctcttcaagcatagaggacatcagcaagggttaaggttaagcatgcagacggagctgcaaatcaaaggagggtgctttgcttgttgagatagctttagttctagtgaaaatgacaactgaagtgagatgaatgatcgatagtcagcagagacaagacttccgaagctgaaactattgtttattttgtcctgggtCccccatgatctaatcacatcactgctaaacctagaaaataaggagaggctgaaaagaagccattcaacaaagaaattcaatctttacatgagatcatcttaaaatagcaacaagaggaccactgctcaaagaaaagaaaaactcccaatatgaacacaggttaacaaggttgaatggcaatcttggttccatcgtaaagactaaagagcggtgttacgatataaaatggtatcatagatagctctaaggtctcagtaaatgtaatttcactcgaatgcattgagcatcaatgagcaataacttgtgctagatttcaaaacattactttaggtaattgaaatcggaatcgctaaccatcgtttgacagatttatgagccttcaatcattcggttttttagccgtaggatggtttgtgagatccgtgcttgcatctagctgctaattaactaggtccacgttactgttccctggtgttaaactagccgtacgtgttttccaaagttaatttgtttatgatccccacacgtactaattacatcgtacttacactataattacatattaattacataggtaattttagtgtatttacgatgtaagtctgaaaattacatatgtaattttagtgtatttacgatgtaagtttgaaatctacttgagcccatttgagcccacgtgagctttagatttgtccacgtgacccgtttgtttgttttttgtattttgtttgtgtatattAatgtcatccattagatgttgatctgaagggtaagaaatctgtatgataggaggccaaaaaatatgtcacatgatgtataggcagcctcgattgaaatcgatatgtgcaactgccaagctaggaatttcacaacttttgcaacatggaagggctgcccaaagctcacagaagtgaaaaataattaaaaaaaaaAGaggagaaaaatcatcctcggcggcggccgggcagccgaggggtgggcgtccagggcacctcccgcggcgtggatgcgaggtatgagccatggcgggtcctccactcctcgggaggatcagttgtggttcccaatttagggattggaggaaggggatataggtgcgtgccgtaccttgaggacgaggccccggagccgctctctacggcgacctcgacatctccggaggaggacggctggtgcggaggaggaccagccatcgagagagcggagaggaagaaggaacgggagagaagggcggcggcgatcggcggtggatggccggatgcggccgccgccggcgactctcggtggcgtttgggtgtt
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| CDS seq | atggctggtcctcctccgcaccagccgtcctcctccggagatgtcgaggtcgccgtagagagcggctccggggcctcgtcctcaaggaacaaactgctgagtatggtgaaaaaacattcagatttgatcggctggacagttattgatgctgaagctgatgcatcagacgtggaaatggatgataaattctggcatgaaatacttgatcttttcttcgtgcatggtagggtttcaaaggggagggaagaggatgaccttgtcttctttgttaataAtatgaaattgaacgggtacaggtccagtgataacatggaaaatccacctcccttttttgtgcgaagatgggctcctaaggtcacaaaaactgtgtatgcatcccCgagccgcgtaaattttcatcttgatcgaaggaaggcagtagaaacggtacctgcataccccaatatttgtttctcaattgatgacttcgatgatacctttgatgcagttgtttTatcagaccctgaacattgctactgTgttattctcaatgcacatgatggggcagcatttcctgaaaacactgaatcgaaaaatcctagctcaaatgtgctatctggggtaaAcactgggagcaaacaagaaaaaccaccaaagggcttctgtgattattattgcagagaactctcttttcaggctacgtcagctaccaaaacgttcgagaagcttatgatgctggcagatcaaaatttgagagcttattctcactcgggcatgaccgcactaaacttgataaactttatatga
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| Protein seq | MAGPPPHQPSSSGDVEVAVESGSGASSSRNKLLSMVKKHSDLIGWTVIDAEADASDVEMDDKFWHEILDLFFVHGRVSKGREEDDLVFFVNNMKLNGYRSSDNMENPPPFFVRRWAPKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFSIDDFDDTFDAVVLSDPEHCYCVILNAHDGAAFPENTESKNPSSNVLSGVNTGSKQEKPPKGFCDYYCRELSFQATSATKTFEKLMMLADQNLRAYSHSGMTALNLINFI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0003320 | OsLaMu_04g0003320.01 | Chr04 | 5041886 | 5052502 | - | NAM | ||
| CDS seq | atggctggtcctcctccgcaccagccgtcctcctccggagatgtcgaggtcgccgtagagagcggctccggggcctcgtcctcaaggaacaaactgctgagtatggtgaaaaaacattcagatttgatcggctggacagttattgatgctgaagctgatgcatcagacgtggaaatggatgataaattctggcatgaaatacttgatcttttcttcgtgcatggtagggtttcaaaggggagggaagaggatgaccttgtcttctttgttaataAtatgaaattgaacgggtacaggtccagtgataacatggaaaatccacctcccttttttgtgcgaagatgggctcctaaggtcacaaaaactgtgtatgcatcccCgagccgcgtaaattttcatcttgatcgaaggaaggcagtagaaacggtacctgcataccccaatatttgtttctcaattgatgacttcgatgatacctttgatgcagttgtttTatcagaccctgaacattgctactgTgttattctcaatgcacatgatggggcagcatttcctgaaaacactgaatcgaaaaatcctagctcaaatgtgctatctggggtaaAcactgggagcaaacaagaaaaaccaccaaagggcttctgtgattattattgcagagaactctcttttcaggctacgtcagctaccaaaacgttcgagaagcttatgatgctggcagatcaaaatttgagagcttattctcactcgggcatgaccgcactaaacttgataaactttatatga
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| Protein seq | MAGPPPHQPSSSGDVEVAVESGSGASSSRNKLLSMVKKHSDLIGWTVIDAEADASDVEMDDKFWHEILDLFFVHGRVSKGREEDDLVFFVNNMKLNGYRSSDNMENPPPFFVRRWAPKVTKTVYASPSRVNFHLDRRKAVETVPAYPNICFSIDDFDDTFDAVVLSDPEHCYCVILNAHDGAAFPENTESKNPSSNVLSGVNTGSKQEKPPKGFCDYYCRELSFQATSATKTFEKLMMLADQNLRAYSHSGMTALNLINFI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0003320 | OsLaMu_04g0003320.02 | Chr04 | 5041873 | 5042128 | - | IsoSeq | ||
| CDS seq | atgttgagactgcgattccagttatgcaacacaaggaatgatcttacgtacatgattttggaaaagtttgtggttagcaagtcttgtgtgctcgatatt |
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| Protein seq | MLRLRFQLCNTRNDLTYMILEKFVVSKSCVLDI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.461196 | 11.649014 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0183100 | RBH | 5.379949 | 2.015963 | 4.236533 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g10420 | RBH | 1.891938 | 1.324331 | 0.772708 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0183100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003200 | RBH | 1.064072 | 1.506592 | 4.222461 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0003760 | RBH | 0.417244 | 3.748531 | 2.867261 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003270 | RBH | 0.965501 | 6.822020 | 9.827402 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003440 | RBH | 0.091816 | 0.210197 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003370 | RBH | 7.630226 | 41.923538 | 23.138206 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0083500 | RBH | 4.066999 | 20.018223 | 16.5006145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003440 | RBH | 0.177251 | 0.350785 | 1.860441 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0085800 | RBH | 5.469448 | 30.835304 | 15.653065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003280 | RBH | 0.426902 | 0.609978 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003520 | RBH | 0.599831 | 6.554862 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003320 | RBH | 11.258599 | 38.391670 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003210 | RBH | 0.679683 | 1.347889 | 1.176533 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003570 | RBH | 0.713566 | 3.081237 | 1.362853 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003350 | RBH | 2.991911 | 41.471836 | 8.515186 |
