Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0002170 | OGI:04011460 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:3298285-3299592 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtggacagtgatggagatggagctctCcctcatgtatgacatcttgtacaccaaggcatatgtgattcacactagcttaggatacatcatccgcatcatggcgccgatcaccatcattgcctcactcttactgtttcatttcagtggcaaaggtggccacAaccgaatcgatgtcatgatcacatatgtcttgttgggcggcgctctcgtcctagagacgaggtcgctgttgagatcactttggtctacttgggggctagtgttcctctgcgacacacgctggagctggcttcgacatgtagctctctgcagcggaagatggcatcggcttcggtacacagttctctctttccgcagagcaatcaagattgctttttcaagaaattcaaggaggtggtcgggaaggatggggcagtacaacatgctgcactcatgctatcataagatcaccgaagcgacaacaagtcaccattggttcaagacgctcaacgatttgtccactctggtgggcttcgctgactggttggatatgcagcattgctcgtcaaatctcgaaattccagacaaggtcaagacaactttgcaagatatgcatgagagaTttgcaccaaatgatttgaacactatGggcttattgaggcataactGggggatgctggcaatgggtgaggacatgggcagcgggactcgccctgagcagttcaagaacctgaagaggtttcatggtgttgacttccatgagagcatccttatttggcacatcgccacagacttattccttgctaaaatagggaaggaagggccaactgtggaggcaatcagggcgatgtccaactatatgatgttcctatttgtggatcgCccagaaatgctaccgggactcccacataaatggctgtacgagatgacaaaaaaaaacataatcgaatcatgcagagcatctaatggtttcactaatgaagtgaagcatggtgggcaaagatcccttaggctcaaacagacagagcaggtagctggcaaactactcaatattgacaaaagggaagtacaaCctggccctaaagaacctcgcctcacctatgcaagaattgttgctgatacactgtccgaatggaaggatgaagatccaattgatgtgctgtttgacctgtggatagattttctgatgtatgcagccaaccgctgcaataGggaatcacatgccaagaagctcaacgctggcggtgagtttttgaccatcgtctggctaatgattgagcactttcaacaattagcaaaagcaaaaaaggagcacggcaatgaataa
More
|
||||||||||
| CDS seq | atgtggacagtgatggagatggagctctCcctcatgtatgacatcttgtacaccaaggcatatgtgattcacactagcttaggatacatcatccgcatcatggcgccgatcaccatcattgcctcactcttactgtttcatttcagtggcaaaggtggccacAaccgaatcgatgtcatgatcacatatgtcttgttgggcggcgctctcgtcctagagacgaggtcgctgttgagatcactttggtctacttgggggctagtgttcctctgcgacacacgctggagctggcttcgacatgtagctctctgcagcggaagatggcatcggcttcggtacacagttctctctttccgcagagcaatcaagattgctttttcaagaaattcaaggaggtggtcgggaaggatggggcagtacaacatgctgcactcatgctatcataagatcaccgaagcgacaacaagtcaccattggttcaagacgctcaacgatttgtccactctggtgggcttcgctgactggttggatatgcagcattgctcgtcaaatctcgaaattccagacaaggtcaagacaactttgcaagatatgcatgagagaTttgcaccaaatgatttgaacactatGggcttattgaggcataactGggggatgctggcaatgggtgaggacatgggcagcgggactcgccctgagcagttcaagaacctgaagaggtttcatggtgttgacttccatgagagcatccttatttggcacatcgccacagacttattccttgctaaaatagggaaggaagggccaactgtggaggcaatcagggcgatgtccaactatatgatgttcctatttgtggatcgCccagaaatgctaccgggactcccacataaatggctgtacgagatgacaaaaaaaaacataatcgaatcatgcagagcatctaatggtttcactaatgaagtgaagcatggtgggcaaagatcccttaggctcaaacagacagagcaggtagctggcaaactactcaatattgacaaaagggaagtacaaCctggccctaaagaacctcgcctcacctatgcaagaattgttgctgatacactgtccgaatggaaggatgaagatccaattgatgtgctgtttgacctgtggatagattttctgatgtatgcagccaaccgctgcaataGggaatcacatgccaagaagctcaacgctggcggtgagtttttgaccatcgtctggctaatgattgagcactttcaacaattagcaaaagcaaaaaaggagcacggcaatgaataa
More
|
||||||||||
| Protein seq | MWTVMEMELSLMYDILYTKAYVIHTSLGYIIRIMAPITIIASLLLFHFSGKGGHNRIDVMITYVLLGGALVLETRSLLRSLWSTWGLVFLCDTRWSWLRHVALCSGRWHRLRYTVLSFRRAIKIAFSRNSRRWSGRMGQYNMLHSCYHKITEATTSHHWFKTLNDLSTLVGFADWLDMQHCSSNLEIPDKVKTTLQDMHERFAPNDLNTMGLLRHNWGMLAMGEDMGSGTRPEQFKNLKRFHGVDFHESILIWHIATDLFLAKIGKEGPTVEAIRAMSNYMMFLFVDRPEMLPGLPHKWLYEMTKKNIIESCRASNGFTNEVKHGGQRSLRLKQTEQVAGKLLNIDKREVQPGPKEPRLTYARIVADTLSEWKDEDPIDVLFDLWIDFLMYAANRCNRESHAKKLNAGGEFLTIVWLMIEHFQQLAKAKKEHGNE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0002170 | OsLaMu_04g0002170.01 | Chr04 | 3298285 | 3299592 | + | NAM | ||
| CDS seq | atgtggacagtgatggagatggagctctCcctcatgtatgacatcttgtacaccaaggcatatgtgattcacactagcttaggatacatcatccgcatcatggcgccgatcaccatcattgcctcactcttactgtttcatttcagtggcaaaggtggccacAaccgaatcgatgtcatgatcacatatgtcttgttgggcggcgctctcgtcctagagacgaggtcgctgttgagatcactttggtctacttgggggctagtgttcctctgcgacacacgctggagctggcttcgacatgtagctctctgcagcggaagatggcatcggcttcggtacacagttctctctttccgcagagcaatcaagattgctttttcaagaaattcaaggaggtggtcgggaaggatggggcagtacaacatgctgcactcatgctatcataagatcaccgaagcgacaacaagtcaccattggttcaagacgctcaacgatttgtccactctggtgggcttcgctgactggttggatatgcagcattgctcgtcaaatctcgaaattccagacaaggtcaagacaactttgcaagatatgcatgagagaTttgcaccaaatgatttgaacactatGggcttattgaggcataactGggggatgctggcaatgggtgaggacatgggcagcgggactcgccctgagcagttcaagaacctgaagaggtttcatggtgttgacttccatgagagcatccttatttggcacatcgccacagacttattccttgctaaaatagggaaggaagggccaactgtggaggcaatcagggcgatgtccaactatatgatgttcctatttgtggatcgCccagaaatgctaccgggactcccacataaatggctgtacgagatgacaaaaaaaaacataatcgaatcatgcagagcatctaatggtttcactaatgaagtgaagcatggtgggcaaagatcccttaggctcaaacagacagagcaggtagctggcaaactactcaatattgacaaaagggaagtacaaCctggccctaaagaacctcgcctcacctatgcaagaattgttgctgatacactgtccgaatggaaggatgaagatccaattgatgtgctgtttgacctgtggatagattttctgatgtatgcagccaaccgctgcaataGggaatcacatgccaagaagctcaacgctggcggtgagtttttgaccatcgtctggctaatgattgagcactttcaacaattagcaaaagcaaaaaaggagcacggcaatgaataa
More
|
|||||||
| Protein seq | MWTVMEMELSLMYDILYTKAYVIHTSLGYIIRIMAPITIIASLLLFHFSGKGGHNRIDVMITYVLLGGALVLETRSLLRSLWSTWGLVFLCDTRWSWLRHVALCSGRWHRLRYTVLSFRRAIKIAFSRNSRRWSGRMGQYNMLHSCYHKITEATTSHHWFKTLNDLSTLVGFADWLDMQHCSSNLEIPDKVKTTLQDMHERFAPNDLNTMGLLRHNWGMLAMGEDMGSGTRPEQFKNLKRFHGVDFHESILIWHIATDLFLAKIGKEGPTVEAIRAMSNYMMFLFVDRPEMLPGLPHKWLYEMTKKNIIESCRASNGFTNEVKHGGQRSLRLKQTEQVAGKLLNIDKREVQPGPKEPRLTYARIVADTLSEWKDEDPIDVLFDLWIDFLMYAANRCNRESHAKKLNAGGEFLTIVWLMIEHFQQLAKAKKEHGNE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.849518 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0156000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0156000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001930 | SBH | 0.0 | 2.822065 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002350 | RBH | 0.0 | 0.000000 | 0.022317 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002080 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002190 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0055100 | RBH | 0 | 0.326604 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002240 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0059300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002220 | RBH | 0.051991 | 0.084238 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002460 | RBH | 0.095330 | 2.168955 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002140 | RBH | 0.048971 | 0.223775 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002050 | RBH | 0.0 | 1.686918 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002330 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002240 | RBH | 0.084174 | 4.018119 | 0.130735 |
