Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0039220 | OGI:03095470 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:36858392-36861817 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtggtaaagcagctgccagctatacatatagcttgcatgagttgcatttcaacttaatttcctttgtgtcatcaatacaacagctatcctacactgaacaagatccctcttgttttacacataacctaagctaactctttacagcaccaaagggaaaccgtctcaggacatgcatcacatgtcctcccattgcctgccttcttgaggcgaagagatggcggacgacgactgagacctccgagagctttgtttatgtcctcccattcccagccttctttgaggcaaagagatggcggacgaccgagagcttgcttgtcgcgcgagaaacgatagaagagacagcagagttcttgccattcagcgatgacgctgtttcttccgattccacgtcttcgtttgattctgaaggaggtggtggaggtattgtcatgaggaaagcatccagcatgcggatgatctggctgaagctaggcctcatggcaggatcctcgacccagcatgactgcacaatgaacacaagctcctgaggggtctcctcaggaaggggtgggcgcgcttgctgtcattagagacgagagggaaaatatcagctcagtgcataatgcaagtgaaaagatagtgaccgtcaagatagctaaagttcaaagcacaggtcaaaataattaaagaaaggtgatacagtcatgtataccagttgaatggtgctaaaaaaatcttaaaattacttgtgtcAaaaattgccatgaccttctctcttctggaagccaaaaacgagtcattgaactaagttgataaaaattcacaacataagaaatagtaccaacttgtttaggggttgtaacattttagccacaaaggagacgttattagtagtaatttatcacctgtctgaacaggaatggtttacaattaaatagcataattcatgaggtgtgacaggtttattataccagacaatttttgaggcagtgatatcatttttatagcaaataatagtttcataccacagtcttgactattgcttaacacttaccttgaaagcagcagcatatgcagcttgtagatttgacatgccttcaaatggcattttattagtcaacagttcccacagaacaatgccaaagctgtacacatccactttatttgtgtaatgcttcttctcaccacgttgaagagtaacagtgctatatagctacaagatagaacaaagagagatcttaagtcaggctttgtaatcacacagatcagtgctagcgcaacaactttctgtttatacagaaggtcctcacgatttagaattacagcccacaagtaattgcacaggcacagaaattaaatcataataatatagctttagactgaattcttgaccattgcctagaacactaaaggtgtgaaagtcttttttttAaaaaaaaagaaattggctttaggcaaaagttgttaatttaaattatttgttgcataaattaatggtttacaacctctggggccatccagcggtatgtccctgtttcagctgtcatcatttcagtcacagtttcttctcgtgcaagaccaaaatcagtaagcttcagcttcttacgatttgcagtgagcaacaaattatctgcacacaataacttttatcagaaaagtacaaataatttgacttaatgactgatatggaaagtaagaactactggaggaaactataagattaagcaagcaaagcagaagagtaaaaaacagaaaatacagctgtctccatggacatggagaaaggaaatcagtttttatgcttatgtaagtaggagaaatgacattaatgccccttactaaaaattttgaataattaacttgccaagatagctctgttgaaaaacgcaagttacctaggcctaaaagaatacatgatgttccaatatcattgattttcacttctgaattgaaaaatggatcagaaacacatgtggagatgtgttaaaaaaatctacatgtaaccataaaattttatgtatatatgcagaaaatttggtcagaaattataacaatagaacaaaaaaacaaatgaagcacaagtgcaaaaataacagcccatgcatgcataccaggtttcaggtctctgtgtattattccattcgcatgcaaacattccattgcatgagctatatccagtgcatagccaattgcagtatggatatctaactggctgggccgaaggctgttcaagtagtttttcagtgacatccccggcaataactcgctgacaataaccattaatggttccttgcaagctccaataaactgcacaggtgtgaaaaaatgttatgaaaatttccacaaaaaattaatgattagctagcgatgggtatgatgcgactgaattaaacgggacaaattaatgaaaaaaaatcagatttgtgacagcagtatgttacccaaacaaggatctattaccttcacaagattgtcatgtttcactttacacatcatatttacttctcgaatgaaacgagcttcaagggttgccttttcctccggagtggtgccattgttaagaacctttattgctacaatttgttcaccatacctatttcacagaacacaaagaaaggcaattaattgctgacatgagatatcacaagtatcctagttgtacttatataatgaagagtaaggcggcaaagtttccaagggaccaacaatatcaactcaatctgtaacagcacaaacaggcagcaccaaaggaaactggattttcaattatcatgagtgagttgcatgctggcttgaacaatctctacttgaccacagcaggaaatcgaagataactgcagcagactagtatagctaaattaagtaagcataattagggtatttggcagtatattggcattgatcgtgtggagatccggatggataggactggattatgaatttatgactaacatttcatcgggggccaaagtgaatcgaagcacaaaatatccaacctaactgatttaacttcctgaacctacatggccccaggaactcataaatagaaggcataattcataccacatgctctgttgatacataaaacctaagtgattgcacagctgcttaacactgcgactagatcggagtattcgaatttggtgcaattgaagccaaaactaacgagttcgagcacaaacttaaaacaaaatcttaagaggtttcttcacttacttccccttgtagaccttgccatgagctccctccccgattttggatccgataaacaaattcttggggtcaacaagcagcttcttgtcaatccaagaagccggcgatgcggcggcgtccgagcagcgcgccggctccaccaagtcccccgccgcgaccttgctcggccgcggccgcctgaactcctcgctgccaccaccatccctacacccgccatcgctgccgcagctcat
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| CDS seq | atgagctgcggcagcgatggcgggtgtagggatggtggtggcagcgaggagttcaggcggccgcggccgagcaaggtcgcggcgggggacttggtggagccggcgcgctgctcggacgccgccgcatcgccggcttcttggattgacaagaagctgcttgttgaccccaagaatttgtttatcggatccaaaatcggggagggagctcatggcaaggtctacaaggggaagtatggtgaacaaattgtagcaataaaggttcttaacaatggcaccactccggaggaaaaggcaacccttgaagctcgtttcattcgagaagtaaatatgatgtgtaaagtgaaacatgacaatcttgtgaagtttattggagcttgcaaggaaccattaatggttattgtcagcgagttattgccggggatgtcactgaaaaactacttgaacagccttcggcccagccagttagatatccatactgcaattggctatgcactggatatagctcatgcaatggaatgtttgcatgcgaatggaataatacacagagacctgaaacctgataatttgttgctcactgcaaatcgtaagaagctgaagcttactgattttggtcttgcacgagaagaaactgtgactgaaatgatgacagctgaaacagggacataccgctggatggccccagaggttcaagcgcgcccaccccttcctgaggagacccctcaggagcttgtgttcattgtgcagtcatgctgggtcgaggatcctgccatgaggcctagcttcagccagatcatccgcatgctggatgctttcctcatgacaatacctccaccacctccttcagaatcaaacgaagacgtggaatcggaagaaacagcgtcatcgctgaatggcaagaactctgctgtctcttctatcgtttctcgcgcgacaagcaagctctcggtcgtccgccatctctttgcctcaaagaaggctgggaatgggaggacataa
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| Protein seq | MSCGSDGGCRDGGGSEEFRRPRPSKVAAGDLVEPARCSDAAASPASWIDKKLLVDPKNLFIGSKIGEGAHGKVYKGKYGEQIVAIKVLNNGTTPEEKATLEARFIREVNMMCKVKHDNLVKFIGACKEPLMVIVSELLPGMSLKNYLNSLRPSQLDIHTAIGYALDIAHAMECLHANGIIHRDLKPDNLLLTANRKKLKLTDFGLAREETVTEMMTAETGTYRWMAPEVQARPPLPEETPQELVFIVQSCWVEDPAMRPSFSQIIRMLDAFLMTIPPPPPSESNEDVESEETASSLNGKNSAVSSIVSRATSKLSVVRHLFASKKAGNGRT |
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| Function | Serine/threonine/tyrosine-protein kinase HT1 [UniProtKB/Swiss-Prot:Q2MHE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0039220 | OsLaMu_03g0039220.01 | Chr03 | 36858643 | 36861817 | - | NAM | ||
| CDS seq | atgagctgcggcagcgatggcgggtgtagggatggtggtggcagcgaggagttcaggcggccgcggccgagcaaggtcgcggcgggggacttggtggagccggcgcgctgctcggacgccgccgcatcgccggcttcttggattgacaagaagctgcttgttgaccccaagaatttgtttatcggatccaaaatcggggagggagctcatggcaaggtctacaaggggaagtatggtgaacaaattgtagcaataaaggttcttaacaatggcaccactccggaggaaaaggcaacccttgaagctcgtttcattcgagaagtaaatatgatgtgtaaagtgaaacatgacaatcttgtgaagtttattggagcttgcaaggaaccattaatggttattgtcagcgagttattgccggggatgtcactgaaaaactacttgaacagccttcggcccagccagttagatatccatactgcaattggctatgcactggatatagctcatgcaatggaatgtttgcatgcgaatggaataatacacagagacctgaaacctgataatttgttgctcactgcaaatcgtaagaagctgaagcttactgattttggtcttgcacgagaagaaactgtgactgaaatgatgacagctgaaacagggacataccgctggatggccccagaggttcaagcgcgcccaccccttcctgaggagacccctcaggagcttgtgttcattgtgcagtcatgctgggtcgaggatcctgccatgaggcctagcttcagccagatcatccgcatgctggatgctttcctcatgacaatacctccaccacctccttcagaatcaaacgaagacgtggaatcggaagaaacagcgtcatcgctgaatggcaagaactctgctgtctcttctatcgtttctcgcgcgacaagcaagctctcggtcgtccgccatctctttgcctcaaagaaggctgggaatgggaggacataa
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| Protein seq | MSCGSDGGCRDGGGSEEFRRPRPSKVAAGDLVEPARCSDAAASPASWIDKKLLVDPKNLFIGSKIGEGAHGKVYKGKYGEQIVAIKVLNNGTTPEEKATLEARFIREVNMMCKVKHDNLVKFIGACKEPLMVIVSELLPGMSLKNYLNSLRPSQLDIHTAIGYALDIAHAMECLHANGIIHRDLKPDNLLLTANRKKLKLTDFGLAREETVTEMMTAETGTYRWMAPEVQARPPLPEETPQELVFIVQSCWVEDPAMRPSFSQIIRMLDAFLMTIPPPPPSESNEDVESEETASSLNGKNSAVSSIVSRATSKLSVVRHLFASKKAGNGRT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0039220 | OsLaMu_03g0039220.02 | Chr03 | 36858392 | 36859521 | - | IsoSeq | ||
| CDS seq | atggcaagaactctgctgtctcttctatcgtttctcgcgcgacaagcaagctctcggtcgtccgccatctctttgcctcaaagaaggctgggaatgggaggacataaacaaagctctcggaggtctcagtcgtcgtccgccatctcttcgcctcaagaaggcaggcaatgggaggac |
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| Protein seq | MARTLLSLLSFLARQASSRSSAISLPQRRLGMGGHKQSSRRSQSSSAISSPQEGRQWED |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.304325 | 16.904028 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0816100 | RBH | 2.478276 | 2.807255 | 2.905659 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60150 | RBH | 1.626240 | 1.829445 | 0.720542 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0816100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039620 | RBH | 0.960402 | 10.504764 | 6.440902 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039290 | RBH | 0.428371 | 5.053009 | 3.247069 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039350 | RBH | 2.363169 | 11.447762 | 5.317787 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039590 | RBH | 0.263727 | 0.353749 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039150 | RBH | 10.514592 | 6.295280 | 21.032545 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0582800 | RBH | 5.3024635 | 25.579771 | 11.423994 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038910 | RBH | 0.078266 | 1.342182 | 1.662295 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0584500 | RBH | 13.9075945 | 29.3113815 | 14.986398 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039470 | RBH | 0.399386 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039430 | RBH | 0.975387 | 13.737291 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039090 | RBH | 21.668697 | 24.091278 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039120 | RBH | 1.023075 | 2.474312 | 2.329927 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0007740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038960 | RBH | 1.194429 | 5.766769 | 5.268675 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038710 | RBH | 1.762351 | 54.059685 | 15.915157 |
