Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0029270 | OGI:07010130 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:29157484-29161193 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttattgttttccaacgtaataatacactggctgtttggacctaaaaagtgtaatatcctcctgcgcattaaaaagtaaatttgttaattttaaatagataagatatttgatcaactattttttattaagaaacacacctgtgtaatagaacgagaaagtgattctctgtccaattctccataagtttgagcatgaatagtccacatgaagaacggcattgttttaagtataagtacaactattaaaaactaaacacagtacaccatttgaatatatcattcatcttatatatatatattacatgaaaaatttatttgtagtatacctgtcttcctgaattctttcttttagttgttctattattggccactgataacattgaggttaccccatttgtggctaggcaagtcctgttgccgtccaataatattaagatgatatgtagtccttgtagctgctcaattatcatatttgcagtcagcaatatacataaatgaattacaatcttaaaaaaaaaagagagttcacatgtcatatacactaaccgtatttgcgaggtcagcacgattgaatgtcatacacatggaatcaagtacttgtatctgttttttttctgtgttgacaaccgctaaataccaatgattatctttcatatttattggaataaaaatctaacaagacatatggagttaggacatatatatattatattatatctatatatataaataaataataaacttaaatactatcaaatatagagagccaaacaataccagttcaggtgtaggtaattcttcactatctttgtaataaagttatcttcatcttcatttactccattgaccccagccgctttcagcatgtcagaaagaacgggtttcatatttcactttcttatcgttatttgcttgctcactcaaacagtgtatgtacgcactgatgacctgttgattcaattaaaaatctgcaattactaaagatatgttgacaattaaattgtaacgttgcttcatcataggcagtttacttacatcatcgttcaaaaatttatctccagagagaaggcacgttaagtgacgttcttgttataaaaatgacccatgtccaccagtgtacaattttcagccgaatcttcaattaaaaatatggccattacatcctcatatgttaattcataatctgtaaaacaaaaaaaatgaattctgatatcacaagttttatataaagcacaaccactcttaaccaaagaccaagagataattatgcatgcatccaataaaattagaggtcttagtggagagttaaaataaaatattttagtggagaagaggtgttagttaatgacatgcatgcatatatgccttatattatgaaacaacttgaaaaagtaattttgccgtacattgtggaatgaagggagtatgtgaaaacataatgtaccttgagggagatactcgtaggtctggccaaacatagatcgtatcaaatttgatggtacatcaatatttggcatgctgactttggatactctatgctcctcggattccgaatttttgctttcttcgagggtggggttgtaatcatatcatgaatgtcgtcttgattgacctgagtaccacatgagattaagcaaggatatctatattgcatatggaaattatataacactgaaaaaaaacacgtcggcagggatgtcaatattattgttgcattagttggtgcaatgctttatttgctcgatcatagcctaatctttttttctggtgaaccataccactcagagtattatatattatttgtaaataagctgagggccaggttgattttatgttgattatgttgttagagagttatttataaaaccataaaaattatttgttctaattgaaaactatttaattaatcatgcgttaatgagtccctcggttttgcgagtgcgagagatgagttcctcgtataagtaaagaagcaaccctgagcactacgcacaagctagtgtaggagcaaccccagccgctttcagcatgtcagaaaggctccgggatacaggatttcgtgaattctctaatgatgttctacgactttgtgtatcctgacctgaattcgtagctagaaaatcagtttcattattgttctgtgtctctccttgaactatgtagctcaaaggttcttcagatccttcattaagatcataatatgctatattgtttatcactataaatgggagacgtctaggtgtgatcgtgggttgttgagatacacttcctgtttgaacatagtacattgaactataaacaattgcaattgtgaaaccattcattgcaagtgcacgtaaggatatacattacctgttccctttgttgtaggggtgtccaataattcatcattactaacccattgttcccttcctgcgggatctccagcggtgacaatagaaatatctccaagcgtaggagtaggagtagaaaaTtttgacgtcgtagctttaggcacattacttgaaagagtttaattaataaaataataaaatgagccaagatattcgtaagctttaatttggatatagacatatatgcgtatatttatatataaaccttgagattcatccttcctccgcctcctggcatcgcgtgccttcctgtttctatcttccttttgctctttggtcaatgatgcgtaccactctctagaacgcttatttttagttcagacgcgctgagattagtgacatctccatgagcatctgcataaaaaatctgagttcacacatacgcatatataaatataataattgtcattttatacttgagttatttgaatggaccttctgcctggagaggcatggtatactcgctggtgtactgtaggacatatcagaactgttagtaaatggtagacgcacaggcgttacaatagaacccacattttcagtgcctgcatcattaacatccaaccggccccctactgattgatcttcagtgcttgcaattttaatatcaccaaacggagctgctattgaaatgcaacataaaaaaagtttttggcacaaatttacaaacatattttagcaggaccatatgacaactcaacctgaaacagatgaggccgtagtagtaattttttttgatgtcgcagcttgagacccatatttgaaagttcaattaattaataataaagttttctgttcagagagtttagatatgctgcagtagagatttaaaccttgtgattcaaagttcttccgctttctgatatctcgtgccttcttgtttctatcttccttttgctctttggtcaatgatgcataccactccctagcacgcttcctttttagttcagtcgcacttagttttgtaacatcttgaagagtgcatgcacacaaaactgtgcttaatacaaaagccttaaaaagaaacaaaatatataatatagtgctacgcccaacctgtagagtccaagttgttgtgctggcaattcacgattttggcacattagttccatttttattagcagcggatggttgtttgtcaaattggcatcattacattagttatatcagcaaaaaggacctgagggaggagtgatcctcataTtagcaagcaacaatatatcaattgagcgataaatataacattagctagatggatgaaaatgtcacctgatcttgttgacgatgttggcacagaactCccaccattgttatccat
More
|
||||||||||
| CDS seq | atggataacaatggtggGagttctgtgccaacatcgtcaacaagatcagctccgtttggtgatattaaaattgcaagcactgaagatcaatcagtagggggccggttggatgttaatgatgcaggcactgaaaatgtgggttctattgtaacgcctgtgcgtctaccatttactaacagttctgatatgtcctacagtacaccagcgagtataccatgcctctccaggcagaagattttttatgcagatgctcatggagatgtcactaatctcagcgcgtctgaactaaaaataagcgttctagagagtgctacgacgtcaaaAttttctactcctactcctacgcttggagatatttctattgtcaccgctggagatcccgcaggaagggaacaatgggttagtaatgatgaattattggacacccctacaacaaagggaacaggaagtgtatctcaacaacccacgatcacacctagacgtctcccatttatagtgataaacaatatagcatattatgatcttaatgaaggatctgaagaacctttgagctacatagttcaaggagagacacagaacaataatgaaactgattttctagctacgaattcagaacgtcacttaacgtgccttctctctggagataaatttttgaacgatgatctacaaggactacatatcatcttaatattattggacggcaacaggacttgcctagccacaaatggggtaacctcaatgttatcagtggccaataatagaacaactaaaagaaagaattcaggaagacagtttttaatagttgtacttatacttaaaacaatgccgttcttcatgtggactattcatgctcaaacttatggagaattggacagagaatcactttctcgttctattacacaggaggatattacactttttaggtccaaacagccagtgtattattacgttggaaaacaataa
More
|
||||||||||
| Protein seq | MDNNGGSSVPTSSTRSAPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSTPASIPCLSRQKIFYADAHGDVTNLSASELKISVLESATTSKFSTPTPTLGDISIVTAGDPAGREQWVSNDELLDTPTTKGTGSVSQQPTITPRRLPFIVINNIAYYDLNEGSEEPLSYIVQGETQNNNETDFLATNSERHLTCLLSGDKFLNDDLQGLHIILILLDGNRTCLATNGVTSMLSVANNRTTKRKNSGRQFLIVVLILKTMPFFMWTIHAQTYGELDRESLSRSITQEDITLFRSKQPVYYYVGKQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0029270 | OsLaMu_03g0029270.01 | Chr03 | 29157484 | 29161193 | - | NAM | ||
| CDS seq | atggataacaatggtggGagttctgtgccaacatcgtcaacaagatcagctccgtttggtgatattaaaattgcaagcactgaagatcaatcagtagggggccggttggatgttaatgatgcaggcactgaaaatgtgggttctattgtaacgcctgtgcgtctaccatttactaacagttctgatatgtcctacagtacaccagcgagtataccatgcctctccaggcagaagattttttatgcagatgctcatggagatgtcactaatctcagcgcgtctgaactaaaaataagcgttctagagagtgctacgacgtcaaaAttttctactcctactcctacgcttggagatatttctattgtcaccgctggagatcccgcaggaagggaacaatgggttagtaatgatgaattattggacacccctacaacaaagggaacaggaagtgtatctcaacaacccacgatcacacctagacgtctcccatttatagtgataaacaatatagcatattatgatcttaatgaaggatctgaagaacctttgagctacatagttcaaggagagacacagaacaataatgaaactgattttctagctacgaattcagaacgtcacttaacgtgccttctctctggagataaatttttgaacgatgatctacaaggactacatatcatcttaatattattggacggcaacaggacttgcctagccacaaatggggtaacctcaatgttatcagtggccaataatagaacaactaaaagaaagaattcaggaagacagtttttaatagttgtacttatacttaaaacaatgccgttcttcatgtggactattcatgctcaaacttatggagaattggacagagaatcactttctcgttctattacacaggaggatattacactttttaggtccaaacagccagtgtattattacgttggaaaacaataa
More
|
|||||||
| Protein seq | MDNNGGSSVPTSSTRSAPFGDIKIASTEDQSVGGRLDVNDAGTENVGSIVTPVRLPFTNSSDMSYSTPASIPCLSRQKIFYADAHGDVTNLSASELKISVLESATTSKFSTPTPTLGDISIVTAGDPAGREQWVSNDELLDTPTTKGTGSVSQQPTITPRRLPFIVINNIAYYDLNEGSEEPLSYIVQGETQNNNETDFLATNSERHLTCLLSGDKFLNDDLQGLHIILILLDGNRTCLATNGVTSMLSVANNRTTKRKNSGRQFLIVVLILKTMPFFMWTIHAQTYGELDRESLSRSITQEDITLFRSKQPVYYYVGKQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026680 | SBH | 0.0 | 0.0 | 1.696448 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026410 | SBH | 0.0 | 1.246606 | 0.943107 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026490 | SBH | 0.096119 | 0.030169 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029420 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029130 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026350 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026450 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022820 | RBH | 0.0 | 0.0 | 0.0 |
