Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0025990 | OGI:03067780 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:25850199-25853672 | ||||||||
| Gene Symbol | DOF13, OsDof13, Dof13, OsDof-13 | ||||||||||
| DNA seq | ttacaatcttgaaacccagctacaaccatggccggcgtcgcctccccgaaacggcagagcaagattgcacctgacgaccacgacggtgactgcggccacgacggtgccgacgaacggtccatgagccggtagtcgtcggcggcgcagagcgcgaacgtcgccgcggcgaacagcgcgacggccgtcatcatgttggtgatcagcctcgcggtgaccctcctcgacgcgcagccgccgccgacggcgaacagcatcagggAgcacGgcgagcgacgtggcgaaggtgcaggtgttgacgatcaggtacagcattgccttcccggcctggtccctcgtgacggcggccgccgccgggtcggcggcgagcagcgccgcgaaCcagtcacgcggcctcggcaGgcatccaccccggcggccgcagcgccgcctggaacgccatggcggcaaacagcgtggccaccgccatcagccacccgcgcatgcacAacaagccatcctgttcttgcatccactcctcgccgccgccgccaccagcaccaccggttttctcactaacaccaccggctgacgaatctccggcgacggcggcggcagcctgacggccgatgttctgcacgacggtggggccattgagagggacctggatcgttgtgtcgccgatgtcaatcaccaGcctgatgttctacacgacgcaattgatacacacacataataattagctaaattaatgAactaatcaccattaaacatactaatcaacacattatcttaaaaaacatgctaatcaacagtaaattgcatgcacttcagctgagttgagagatttaacctggacagaattggcagagtcgtcggcgacagattagatctccacgtctcaccgaatactcaaaattagtgtacaaacatccgAtgtggcatGaactaaagtttagtctctatatcctctgctagcattaacatgatactacgtacgtctgccatatgtaccagcagcgaacacacaacaatacatatattgtgaagcatgtccatgtctgtgtttggaagactggtatttatcatgaataatattttaccgttgaaagAaaactttatatttttaatgtacctctactatctttagagacttcagagttagtaaaggcgtttctaatgcagtgaaacataatcttccctttcgaaatatgacttaaacaacaatgtcacaatttcgacgaggtctcatacaacatcgcaaacatcAaacacagtatcataatggagcgattataatttgtctcgctcgaaggcaagtctctcaactttattattgaattcaataaatAacccttattatcaaactcaATattgtagccatataaatgaaaatatgtccgaaaacataactgaacaaacatagaaaaaagaaacaaccaaggtccttatagactaagggaagatcttcaactgtctcctcatcaaatttattcccaTtaagatggctttgctctccttttactgtaTtgaataagtgcaatgcacctatgtcattcaccaagaattaaagggcattaggtatcatataaatgtgtcataagtatgggcaatgatattgcaattagtaagattacccttataaggaagctgttgtttgaagccctcgcagtcctcttactcatgcccagacttatggcaaagcttgcagacaatgatgacgcttcactcattgggctcattagtgagattctcattagtctttagagctttagtggggaaagattgcttattacgcctttcggcatttaGTtgtttttcctcaTtaacatcaTgacttattaattCtgtaattgacTatttattcttttgagtatgatagcttagtgattcaaaatctgatggcaacgaattcataatgaaatagacaagAaaatcattagAaatagtcatgtccatagctcttagtcgctgaactgaatgatgattgatattatgtgtgttgcgacaccacttttaccatcatagcgggattgacacaaccttgtaatgagggcatcaacataaatagcagaggagcgtcatgtctggtattgtacaggaggacctaaattaaacttattccgtacttgttagcctgtcgtcctttccctgggcagctctcgcgcggctgaagaatgaaaaactactagttcaaagcccagtccagttactcgagtcgggccgccgccgttgaagatttatcctggcagctttggttgcacgagaactagtagattAatggtacgacaggcagcacatccattctggtaacctcatttcattttaacccttcgcccaTtttccttgtccaaacaagttccgaaaacaagagcatagcagaaagaagtaaatatAtaaatagcaaATatgacacaaacaaggggttttcatgggaaaaaaaaggaactttaatttaatttgtactagctcggtactatggatcatataccacacacacagtaacacttttaaaacagaacacaacAacaacaacaacaacgttcgtactaacatcgaccacgcagtaaagaacacgtaattaacccacccagcgctattagacaccctccatatcgactaactacgggaacatcctgcagcagtactgaaaacacaattaagctaatcctagtcgaccattacatgcatgcatgcatgggaaagtatttttgcactgtagaagtactatcacagaagctgtggttgctgctgggcccctccatgcatcagcccgcccacctgcgccgccgccgcagtgaactccggccacatgccgccggccgccatcctccatgtctcggcattattgctgctgctgtccaacagcccggtgggccagagcagaggcgccgccgacgacgacgacgacgacgtcgccaccgctgcagcaggtccgccgccgccggcgacggcatggtggtggcccgggccgggcaGgccgaggccgaggtcgaagccgacgccgacgcggccctccagcagcggcgccgcgccgagcgcgaacagcgagccgagcaggcccgcctgctgcgaggaagaagaggtcgccggcggcggcgtgagcggcccgccgtgatgatgatgatggtgatgaggcggtgcggcggcggcggcgaagtggacgggcgggcggcgcacgggggggcgggggcgcttgcgggtggagccgccgatggggacgttgcggagggagccgccgagcgtccagtagcggcggcaggcgcggcagaagtggcgcggctgcgacgtgttgtagttgttgtagtagcagaacttggtgtcgtgcgacgcgcaccgcgggcactgctccctgctactccctcccacgccgcctgacgccgccgccaccgccgccggaagcggatgctggaggcaggcgggaggcagcaggagcgatcccgacgccatggacgccggcagctgctgcagcgcagcttccatcacctgtcctggcat
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| CDS seq | atgccaggacaggtgatggaagctgcgctgcagcagctgccggcgtccatggcgtcgggatcgctcctgctgcctcccgcctgcctccagcatccgcttccggcggcggtggcggcggcgtcaggcggcgtgggagggagtagcagggagcagtgcccgcggtgcgcgtcgcacgacaccaagttctgctactacaacaactacaacacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgctcggcggctccctccgcaacgtccccatcggcggctccacccgcaagcgcccccgcccccccgtgcgccgcccgcccgtccacttcgccgccgccgccgcaccgcctcatcaccatcatcatcatcacggcgggccgctcacgccgccgccggcgacctcttcttcctcgcagcaggcgggcctgctcggctcgctgttcgcgctcggcgcggcgccgctgctggagggccgcgtcggcgtcggcttcgacctcggcctcggcCtgcccggcccgggccaccaccatgccgtcgccggcggcggcggacctgctgcagcggtggcgacgtcgtcgtcgtcgtcgtcggcggcgcctctgctctggcccaccgggctgttggacagcagcagcaataatgccgagacatggaggatggcggccggcggcatgtggccggagttcactgcggcggcggcgcagaacatcaggCtggtgattgacatcggcgacacaacgatccaggtccctctcaatggccccaccgtcgtgcagaacatcggccgtcaggctgccgccgccgtcgccggagattcgtcagccggtggtgttagtgagaaaaccggtggtgctggtggcggcggcggcgaggagtggatgcaagaacaggatggcttgtTgtgcatgcgcgggcggcgctgcggccgccggggtggatgcCtgccgaggccgcgtgactgGttcgcggcgctgctcgccgccgacccggcggcggccgccgtcacgagggaccaggccgggaaggcaatgctgtacctgatcgtcaacacctgcaccttcgccacgtcgctcgcCgtgcTccctgatgctgttcgccgtcggcggcggctgcgcgtcgaggagggtcaccgcgaggctgatcaccaacatgatgacggccgtcgcgctgttcgccgcggcgacgttcgcgctctgcgccgccgacgactaccggctcatggaccgttcgtcggcaccgtcgtggccgcagtcaccgtcgtggtcgtcaggtgcaatcttgctctgccgtttcggggaggcgacgccggccatggttgtagctgggtttcaagattgtaa
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| Protein seq | MPGQVMEAALQQLPASMASGSLLLPPACLQHPLPAAVAAASGGVGGSSREQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPRPPVRRPPVHFAAAAAPPHHHHHHHGGPLTPPPATSSSSQQAGLLGSLFALGAAPLLEGRVGVGFDLGLGLPGPGHHHAVAGGGGPAAAVATSSSSSSAAPLLWPTGLLDSSSNNAETWRMAAGGMWPEFTAAAAQNIRLVIDIGDTTIQVPLNGPTVVQNIGRQAAAAVAGDSSAGGVSEKTGGAGGGGGEEWMQEQDGLLCMRGRRCGRRGGCLPRPRDWFAALLAADPAAAAVTRDQAGKAMLYLIVNTCTFATSLAVLPDAVRRRRRLRVEEGHREADHQHDDGRRAVRRGDVRALRRRRLPAHGPFVGTVVAAVTVVVVRCNLALPFRGGDAGHGCSWVSRL |
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| Function | Dof zinc finger protein MNB1A [UniProtKB/Swiss-Prot:P38564] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0025990 | OsLaMu_03g0025990.01 | Chr03 | 25850199 | 25853672 | - | NAM | ||
| CDS seq | atgccaggacaggtgatggaagctgcgctgcagcagctgccggcgtccatggcgtcgggatcgctcctgctgcctcccgcctgcctccagcatccgcttccggcggcggtggcggcggcgtcaggcggcgtgggagggagtagcagggagcagtgcccgcggtgcgcgtcgcacgacaccaagttctgctactacaacaactacaacacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgctcggcggctccctccgcaacgtccccatcggcggctccacccgcaagcgcccccgcccccccgtgcgccgcccgcccgtccacttcgccgccgccgccgcaccgcctcatcaccatcatcatcatcacggcgggccgctcacgccgccgccggcgacctcttcttcctcgcagcaggcgggcctgctcggctcgctgttcgcgctcggcgcggcgccgctgctggagggccgcgtcggcgtcggcttcgacctcggcctcggcCtgcccggcccgggccaccaccatgccgtcgccggcggcggcggacctgctgcagcggtggcgacgtcgtcgtcgtcgtcgtcggcggcgcctctgctctggcccaccgggctgttggacagcagcagcaataatgccgagacatggaggatggcggccggcggcatgtggccggagttcactgcggcggcggcgcagaacatcaggCtggtgattgacatcggcgacacaacgatccaggtccctctcaatggccccaccgtcgtgcagaacatcggccgtcaggctgccgccgccgtcgccggagattcgtcagccggtggtgttagtgagaaaaccggtggtgctggtggcggcggcggcgaggagtggatgcaagaacaggatggcttgtTgtgcatgcgcgggcggcgctgcggccgccggggtggatgcCtgccgaggccgcgtgactgGttcgcggcgctgctcgccgccgacccggcggcggccgccgtcacgagggaccaggccgggaaggcaatgctgtacctgatcgtcaacacctgcaccttcgccacgtcgctcgcCgtgcTccctgatgctgttcgccgtcggcggcggctgcgcgtcgaggagggtcaccgcgaggctgatcaccaacatgatgacggccgtcgcgctgttcgccgcggcgacgttcgcgctctgcgccgccgacgactaccggctcatggaccgttcgtcggcaccgtcgtggccgcagtcaccgtcgtggtcgtcaggtgcaatcttgctctgccgtttcggggaggcgacgccggccatggttgtagctgggtttcaagattgtaa
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| Protein seq | MPGQVMEAALQQLPASMASGSLLLPPACLQHPLPAAVAAASGGVGGSSREQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPRPPVRRPPVHFAAAAAPPHHHHHHHGGPLTPPPATSSSSQQAGLLGSLFALGAAPLLEGRVGVGFDLGLGLPGPGHHHAVAGGGGPAAAVATSSSSSSAAPLLWPTGLLDSSSNNAETWRMAAGGMWPEFTAAAAQNIRLVIDIGDTTIQVPLNGPTVVQNIGRQAAAAVAGDSSAGGVSEKTGGAGGGGGEEWMQEQDGLLCMRGRRCGRRGGCLPRPRDWFAALLAADPAAAAVTRDQAGKAMLYLIVNTCTFATSLAVLPDAVRRRRRLRVEEGHREADHQHDDGRRAVRRGDVRALRRRRLPAHGPFVGTVVAAVTVVVVRCNLALPFRGGDAGHGCSWVSRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0619151 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0619151 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026580 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026320 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026410 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0413700 | RBH | 0.4983275 | 0.007953 | 0.82611 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025960 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0418500 | RBH | 0.6651265 | 0 | 4.740392 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026220 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019030 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026060 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026010 | RBH | 0.0 | 0.0 | 0.0 |
