Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0020180 | OGI:03042710 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:16653249-16657721 | ||||||||
| Gene Symbol | SCP18, OsSCP18 | ||||||||||
| DNA seq | ggacgcaaacaaaatgctctctatatatatcatcaatttcattgccttgaagtgtgcattgtttttttttctgtatttctttttgaagaaacggtacaatgtcattctgctaattgagtgaggtatatctgtttgccttctgttttctatcttttcttgggtatatctgttactgatgggagatatctaactggctggagactgggttatgctactgatcatgctcagtgcaatgcagggctgatcagcaggtacctgcagagaacataacacaagtaacaaactaacaattcagcttagaaatcaaacttgtaactagagtttttccagtaatggcatgcgtttttttttttcagtagtgtggcatgtgtatgttgagacttacaaagtgtccagccccaagtatccagtagaaatgcaggttcttgtatgatctgacgaacgccttagtgcccttggaagagccacacttcaaaggctgccttggtaggctcaggaagttcttcagaccatcccatctgaaatttataacaaagctcttcatcacacatctcaattgttcaacgaactagtaaaatttcgaagaggaaaataatcccttacttgagcttcttcacccatgcttctgcaccgatcgtcgagcatattacatcaagcttcagaagagaaaaaaaataacacaccgaatcagggtttgcactttcggaaggcaccgaaatttcagatatttccaatgaacttttgaaaatttaacgcatttttgccaaatttgaataaattatggctaaattcacaaatatttgggaaaatccaaaacatttggacgaaatatttgcttgccgggggtggcgaaattaccgagattttcgaatattttgttccggaagttcaatccctgcactgaattactactctgaatttacagagttgtagtgctagcttacctaattcgttgatttaatgactttttttttagttatgcaccactaaaagaatattgcaaactttcaggactcaaatagcacatgatttctctccaaactgttgaccttgaccatgtgagcaataaccagccatgtgagagtagatggctgttgcaatctgcagatctcttgctgctcactcaactcctgagcaaaagtgctccgattggagagctcctcacgcatggaagtttccctctaatcctagccaggcatatgcctggaccccttggctgcaggatgtggctgtcactaatgatctctgaactttacagtggaagttaccccaaatttcagaaagggtgccgccttttctgaacaacaactcgtcggcttcacgttatcctgctctcccactgactagcagcaccctttattctttatatacttcttgttgcttactcaagatgcttccagcatcaattggtaacatgcaaggaatccccatcttatttgctggatatatgcactgccaattaatcaatcaaaattatgcatccccatctagtttggacttttgtaacataaatcctgctcattttgtgtgcgctatgcacctagcagaattgtcagtgctcggtagtcagtagttacctgaccattgtagactgtcacattgataccgtaagacagcagctcatcaatctggaacagggcacatagacagttaatcaaacatggaccatttcatcaggaattttacaagttaaagatgcattcattaatagttagatcacctcgttgattcttggcttcatgaaatcgttgaccagcgcgttgtagaccggatccgacagttcctgccacctgcagttcagttgaaattgcagcgttttctcaaggatgaggaggatgatttggacagtaacaaattgaaaaaatcagcagtgcgaacgtgatttggacagttgtgttggtgattgtgatgtgaaacagcgaaagaaatggacacccacttgaggttcttggggatgatcttgagcttttccttgatgacaccgttcatgatgccgtcgatcgtgttggagcctgaatcggccgcttggctgctaaggtatgttgagtacttcatcaactgagcattgcttgacgacggcgatgaggagctcgccgccgataagtctgccgacaccgggtccatgccggagtcaagcaagaaattgtacatgtcctgccaaaaaaaaaaaaaacaactctagtgtgatcaagctagctgtactgctgactgggtgtgaacataatctgcaaaatgctgatagtaaatacagatttttgcagctttctcgcccttttctgtgtgtattgtactactaaattaaaaagatggcggtgggtgaaccttgtctcctttctacttgatcccatctctttcaatgaatgataacaaaacaacaaaagaagaacgaaaattctgtctaataataacatagtcctaacaaacatgagaaaattgtcctatcgaaaacaagcttcctaaacaactttatctcttcagacaaactgactcttattgtcttacaagctagccacctctaatccataggaagttctggattgcaagttacacttgactgaaaatgtttccaaacgaaatttctttctaatggatagttacgttggttaaagaaaatagtactaccatgttctttggactttcgcgtcatatgcatatttgactcatgcttacagtaatttcccaacgtgatgataaaactatatattatattgttatgacgtggcaaatctaataatatgattctcgcaatcaatttaaatggtttaacaagctctcttttttattttgctactggccctatactaatgagtaaccaaaaaatgtgtcaatttttcaagattaatagtggtaaaaaaaagaaattttcccctaatatgtaacagaattcaaaaattttcaccaaaaatatcccgacaattcacagaggtaccaaaatttttaattgtatacttggggtatctctaagataagttttccaatagaaaatatatatgatcataaaatactcaaaataaaagcgtgtgagtgctacgcgtgcagtggctagtggctgctagtagtatctgctagtacgagtggtggagtaaacggtcaaacacttacgacgctggagctctttttgtcgatgaaacccagcaggtcgatccacgactgctgcgagtccgcgagctgccccgccgtgatctgctccttcaccgtcgccgccatcctgacacatcacggttcacacatacgtacgtcattaattagagacttcgccggagagagcctagctatgtttttgttcttctttcgattcgtcgcggcccgccgccgccgtggcttacttgctggcctcgtcgccggcgttgtcgtccagcctcgacacctccagcagcagcggcgtgtacgcgagctgcatatatatccatcaagaaaacgtcatgaattattccttccgagcttgatctatacagcgttgaattgtgagcggattccaagaaaatcgttttgttttctcaccgtgaaatcctccggcgagatccagctgtcgccgagcgccacgccgccgaggttgagcttgagggcgccggcgcggatggcccgggcgagggagacgccgagcgtggcggcgtacttgccgccgtaggactcggcgacgaggaacagcgggctgctctgcagggtgggtatctccttggcggcgagcgccctgagcagctcggtggcgtccgtggccgcctgccagtccgtcgtcaccagcgcgctcgggtcgtccgcgtagctgtacccgacgcccaccgggttgtcctgctcgccgtcgccaccattgacacagctcaagtcagctcatgtacgtagcagaaacagagcaagaaaggagaattccgccgcgtgttcgtcggtctcgatcgctcaccacgaagatgaggtcggccttctgcagccacgtcgagtcgcgcggcttcaggttgacgtccagcggcccgacctccaggaagttgccgagcccgacgcccgacgctccctgctccgacgacgacgacgacgacatgcatcgattagcgttcttgagctcaaacatgattagaattcaaggtgaagagaagtgtgtaccgggccgccttgcagccagaggatggtcggccatggcttccccggcgacgacgcccgctgcgggctcttgtagtaccaccagaacaggtgcgcctctgcaacgacgaacatggcatatttacatttagtttagcacttagtagtaattaaagatgctcattagtggttgtcgatcgacgtactcgggcgaacttggacgtatccccagagctcgctgccgtcgccggtgccggaggtgaggtcgtcgtcggcggcggcggcgcgctcgccgtggaggagacagaggaagaggagggcgagcagagcaaggggaagaagaggaggatagggcctgtccatatcgagggccgtagtggctcagtatgctagtgcgagcag
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| CDS seq | atggacaggccctatcctcctcttcttccccttgctctgctcgccctcctcttcctctgtctcctccacggcgagcgcgccgccgccgccgacgacgacctcacctccggcaccggcgacggcagcgagctctggggatacgtccaagttcgcccgaaggcgcacctgttctggtggtactacaagagcccgcagcgggcgtcgtcgccggggaagccatggccgaccatcctctggctgcaaggcggcccgctcaagaacgctaatcgatgcatgtcgtcgtcgtcgtcgtcggagcagggagcgtcgggcgtcgggctcggcaacttcctggaggtcgggccgctggacgtcaacctgaagccgcgcgactcgacgtggctgcagaaggccgacctcatcttcgtggacaacccggtgggcgtcgggtacagctacgcggacgacccgagcgcgctggtgacgacggactggcaggcggccacggacgccaccgagctgctcagggcgctcgccgccaaggagatacccaccctgcagagcagcccgctgttcctcgtcgccgagtcctacggcggcaagtacgccgccacgctcggcgtctccctcgcccgggccatccgcgccggcgccctcaagctcaacctcggcggcgtggcgctcggcgacagctggatctcgccggaggatttcacgctcgcgtacacgccgctgctgctggaggtgtcgaggctggacgacaacgccggcgacgaggccagcaagatggcggcgacggtgaaggagcagatcacggcggggcagctcgcggactcgcagcagtcgtggatcgacctgctgggtttcatcgacaaaaagagctccagcgtcgacatgtacaatttcttgcttgactccggcatggacccggtgtcggcagacttatcggcggcgagctcctcatcgccgtcgtcaagcaatgctcagttgatgaagtactcaacataccttagcagccaagcggccgattcaggctccaacacgatcgacggcatcatgaacggtgtcatcaaggaaaagctcaagatcatccccaagaacctcaagtggcaggaactgtcggatccggtctacaacgcgctggtcaacgatttcatgaagccaagaatcaacgagattgatgagctgctgtcttacggtatcaatgtgacagtctacaatggtcagtgcatatatccagcaaataagatggggattccttgcatgttaccaattgatgctggaagcatcttgagtaagcaacaagaagtatataaagaataa
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| Protein seq | MDRPYPPLLPLALLALLFLCLLHGERAAAADDDLTSGTGDGSELWGYVQVRPKAHLFWWYYKSPQRASSPGKPWPTILWLQGGPLKNANRCMSSSSSSEQGASGVGLGNFLEVGPLDVNLKPRDSTWLQKADLIFVDNPVGVGYSYADDPSALVTTDWQAATDATELLRALAAKEIPTLQSSPLFLVAESYGGKYAATLGVSLARAIRAGALKLNLGGVALGDSWISPEDFTLAYTPLLLEVSRLDDNAGDEASKMAATVKEQITAGQLADSQQSWIDLLGFIDKKSSSVDMYNFLLDSGMDPVSADLSAASSSSPSSSNAQLMKYSTYLSSQAADSGSNTIDGIMNGVIKEKLKIIPKNLKWQELSDPVYNALVNDFMKPRINEIDELLSYGINVTVYNGQCIYPANKMGIPCMLPIDAGSILSKQQEVYKE |
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| Function | Serine carboxypeptidase-like 51 [UniProtKB/Swiss-Prot:Q67Y83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0020180 | OsLaMu_03g0020180.01 | Chr03 | 16653998 | 16657719 | - | NAM | ||
| CDS seq | atggacaggccctatcctcctcttcttccccttgctctgctcgccctcctcttcctctgtctcctccacggcgagcgcgccgccgccgccgacgacgacctcacctccggcaccggcgacggcagcgagctctggggatacgtccaagttcgcccgaaggcgcacctgttctggtggtactacaagagcccgcagcgggcgtcgtcgccggggaagccatggccgaccatcctctggctgcaaggcggcccgctcaagaacgctaatcgatgcatgtcgtcgtcgtcgtcgtcggagcagggagcgtcgggcgtcgggctcggcaacttcctggaggtcgggccgctggacgtcaacctgaagccgcgcgactcgacgtggctgcagaaggccgacctcatcttcgtggacaacccggtgggcgtcgggtacagctacgcggacgacccgagcgcgctggtgacgacggactggcaggcggccacggacgccaccgagctgctcagggcgctcgccgccaaggagatacccaccctgcagagcagcccgctgttcctcgtcgccgagtcctacggcggcaagtacgccgccacgctcggcgtctccctcgcccgggccatccgcgccggcgccctcaagctcaacctcggcggcgtggcgctcggcgacagctggatctcgccggaggatttcacgctcgcgtacacgccgctgctgctggaggtgtcgaggctggacgacaacgccggcgacgaggccagcaagatggcggcgacggtgaaggagcagatcacggcggggcagctcgcggactcgcagcagtcgtggatcgacctgctgggtttcatcgacaaaaagagctccagcgtcgacatgtacaatttcttgcttgactccggcatggacccggtgtcggcagacttatcggcggcgagctcctcatcgccgtcgtcaagcaatgctcagttgatgaagtactcaacataccttagcagccaagcggccgattcaggctccaacacgatcgacggcatcatgaacggtgtcatcaaggaaaagctcaagatcatccccaagaacctcaagtggcaggaactgtcggatccggtctacaacgcgctggtcaacgatttcatgaagccaagaatcaacgagattgatgagctgctgtcttacggtatcaatgtgacagtctacaatggtcagtgcatatatccagcaaataagatggggattccttgcatgttaccaattgatgctggaagcatcttgagtaagcaacaagaagtatataaagaataa
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| Protein seq | MDRPYPPLLPLALLALLFLCLLHGERAAAADDDLTSGTGDGSELWGYVQVRPKAHLFWWYYKSPQRASSPGKPWPTILWLQGGPLKNANRCMSSSSSSEQGASGVGLGNFLEVGPLDVNLKPRDSTWLQKADLIFVDNPVGVGYSYADDPSALVTTDWQAATDATELLRALAAKEIPTLQSSPLFLVAESYGGKYAATLGVSLARAIRAGALKLNLGGVALGDSWISPEDFTLAYTPLLLEVSRLDDNAGDEASKMAATVKEQITAGQLADSQQSWIDLLGFIDKKSSSVDMYNFLLDSGMDPVSADLSAASSSSPSSSNAQLMKYSTYLSSQAADSGSNTIDGIMNGVIKEKLKIIPKNLKWQELSDPVYNALVNDFMKPRINEIDELLSYGINVTVYNGQCIYPANKMGIPCMLPIDAGSILSKQQEVYKE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0020180 | OsLaMu_03g0020180.02 | Chr03 | 16653249 | 16657721 | - | IsoSeq | ||
| CDS seq | atgctcgacgatcggtgcagaagcatgggtgaagaagctcaaatgggatggtctgaagaacttcctgagcctaccaaggcagcctttgaagtgtggctcttccaaggg |
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| Protein seq | MLDDRCRSMGEEAQMGWSEELPEPTKAAFEVWLFQG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 16657254 | 16657344 | - | OsLaMu_03g0020180.01 | OsLaMu_03g0020180.01,OsLaMu_03g0020180.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.104669 | 2.237867 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0393700 | RBH | 0.138160 | 0.918577 | 1.068423 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27590 | RBH | 0.057650 | 0.277732 | 0.311529 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0393700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020610 | RBH | 0.185648 | 18.002079 | 0.651806 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020480 | RBH | 0.000000 | 2.602209 | 0.176738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020510 | RBH | 0.197721 | 24.514164 | 2.241782 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020500 | RBH | 0.000000 | 0.780328 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020340 | RBH | 1.572867 | 40.542961 | 6.941932 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0262200 | RBH | 0.975243 | 5.827151 | 0.1374405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020130 | RBH | 0.079848 | 2.734694 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0264400 | RBH | 2.1649855 | 26.5622475 | 0.5823725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020320 | RBH | 0.084861 | 0.405449 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020340 | RBH | 0.106917 | 19.367956 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020430 | RBH | 2.158138 | 29.155598 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020310 | RBH | 0.484614 | 2.927207 | 0.120086 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020180 | RBH | 0.0 | 6.843333 | 1.898665 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020020 | RBH | 0.189784 | 3.793070 | 0.000000 |
