Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0020090 | OGI:03048320 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:16522070-16523996 | ||||||||
| Gene Symbol | SCP15, OsSCP15, - | ||||||||||
| DNA seq | ctactcattaggctcatcatcgaaatttcgtgaggtgctagtgacctgtttcttTCccTttcttctagcaccagttggaggtctgcgtcctgacaaagataatctttcaggtgaatgtctttcacggacagacctacggacctcatcaacacggctgaaatcaaggtggctgtagtcttgggttggctgagttattggtggcggttcgtcaagttgtgacggtcctatctcgtgatgtgctgtggacgaCccCccaccgtagctgcatggttctccgtaggattgtgtgctgccagcatattccatcctttgttcggggttgtacattcctacaAaacattgaatgcaaatttgtagcgtacgcagatactggaaataatatAttttttactcaattataaatggtacctgttgtttgtggttgcatgataggtggttgactgaacaaccaatctccatggcctaacatatccagaaagcttgctccttgtggttgtgtatcttcatttatggacatttggtatatccccccttcaggtgcagcgcaacagtaatatcacaatatatataacgctcgataaattaaaaaaacagtatgtacgaaccagtgttgtatgtctgagctccttgccacagatcgtttgtacccgtcgAaaacatgggcatgttaacttgaggtatacctgaaaaaggaagcaaaaaatgtgcatgactcactatattacAaaatgatgaacattaccgtgtgcgtttattggactaccagaaaaccctccttggaactgtgagcttccagcttctgtacgcatggggggaaccagttggctggatcctgcgtacggtgcaaaccctccctaccattgacctatggtacttgcatgcggAatagaagggatcaccgctgtacttcctacaataaattaggcaatAaaattagaagggatcaccgctgtacttcgtaccataaattagtccataaaaatagtgtctagtacttataagttcttacatgaaattagcattgggttgaacactctattcagtacaagttaggccacttgtgcttaaaagagctaaataattgaaaatagcacaacatataatgattgaaaataagaccagattttgtaaaagagttttacccggtaccgatgtgaacccttgatgccactgactccctcctgttgttactggtgtaggccttaccatttgcgtgctacctgtaaTtattcatttatttactacgacttaacaaatagtatgcttcaaaaatatttgtatcataattagttttaccttcgttgtgcggtccaattatcgtagatggttgtacaggccttaCcgccggcctaggacgcgtggatgttgaGggtcgtgccgatgtggacggcctagaagtggaaggcctggaggaggtagacggtcgttccggaagggggtccgcgaacctgtgtgctgtgggacggtgcacgtctgatgcatgcctgcacgatgccgcgcgcataatacgtttgcatttctggcgcattcggtctagagcagacatcatatcctcatgggacccagctatgttgtcacgcagcttctcccacagtgatgttgtttcagcatatagttcctccgcaatatcaccctacgcaaataaacgttatgatcaaaacatgttttggtgagattaTtgtttccattaaaaatactagttaaggttcgttaccgtcaggtgggtaactggcgctgactgcatagggtacagcgtgtgcacgtcggccatttcaggaatatctgcatctgctattgtcacaagtcgtAcgcgtgtttgtgcggtgtaccaccgcatgtacagcgcgtacgtacgacggtcgtacggtctggattcgttaacaatgtcgagtgctgccctcgaccattgttcaaccCaaggtgtcat
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| CDS seq | atgacaccttGggttgaacaatggtcgagggcagcactcgacattgttaacgaatccagaccgtacgaccgtcgtacgtacgcgctgtacatgcggtggtacaccgcacaaacacgcgTacgacttgtgacaatagcagatgcagatattcctgaaatggccgacgtgcacacgctgtaccctatgcagtcagcgccagttacccacctgacgggtgatattgcggaggaactatatgctgaaacaacatcactgtgggagaagctgcgtgacaacatagctgggtcccatgaggatatgatgtctgctctagaccgaatgcgccagaaatgcaaacgtattatgcgcgcggcatcgtgcaggcatgcatcagacgtgcaccgtcccacagcacacaggttcgcggacccccttccggaacgaccgtctacctcctccaggccttccacttctaggccgtccacatcggcacgaccCtcaacatccacgcgtcctaggccggcgGtaaggcctgtacaaccatctacgataattggaccgcacaacgaaggtagcacgcaaatggcctacaccagtaacaacaggagggagtcagtggcatcaagggttcacatcggtaccgggaagtacagcggtgatcccttctatTccgcatgcaagtaccataggtcaatgggagggtttgcaccgtacgcaggatccagccaactggttccccccatgcgtacagaagctggaagctcacagttccaaggagggttttctggtagtccaataaacgcacacggtatacctcaagttaacatgcccatgtttTcgacgggtacaaacgatctgtggcaaggagctcagacatacaacactggggggatataccaaatgtccataaatgaagatacacaaccacaaggagcaagctttctggatatgttaggccatggagattggttgttcagtcaaccacctatcatgcaaccacaaacaacaggaatgtacaaccccgaacaaaggatggaatatgctggcagcacacaatcctacggagaaccatgcagctacggtggGggGtcgtccacagcacatcacgagataggaccgtcacaacttgacgaaccgccaccaataactcagccaacccaagactacagccaccttgatttcagccgtgttgatgaggtccgtaggtctgtccgtgaaagacattcacctgaaagattatctttgtcaggacgcagacctccaactggtgctagaagaaAggGAaagaaacaggtcactagcacctcacgaaatttcgatgatgagcctaatgagtag
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| Protein seq | MTPWVEQWSRAALDIVNESRPYDRRTYALYMRWYTAQTRVRLVTIADADIPEMADVHTLYPMQSAPVTHLTGDIAEELYAETTSLWEKLRDNIAGSHEDMMSALDRMRQKCKRIMRAASCRHASDVHRPTAHRFADPLPERPSTSSRPSTSRPSTSARPSTSTRPRPAVRPVQPSTIIGPHNEGSTQMAYTSNNRRESVASRVHIGTGKYSGDPFYSACKYHRSMGGFAPYAGSSQLVPPMRTEAGSSQFQGGFSGSPINAHGIPQVNMPMFSTGTNDLWQGAQTYNTGGIYQMSINEDTQPQGASFLDMLGHGDWLFSQPPIMQPQTTGMYNPEQRMEYAGSTQSYGEPCSYGGGSSTAHHEIGPSQLDEPPPITQPTQDYSHLDFSRVDEVRRSVRERHSPERLSLSGRRPPTGARRKGKKQVTSTSRNFDDEPNE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0020090 | OsLaMu_03g0020090.01 | Chr03 | 16522070 | 16523996 | - | NAM | ||
| CDS seq | atgacaccttGggttgaacaatggtcgagggcagcactcgacattgttaacgaatccagaccgtacgaccgtcgtacgtacgcgctgtacatgcggtggtacaccgcacaaacacgcgTacgacttgtgacaatagcagatgcagatattcctgaaatggccgacgtgcacacgctgtaccctatgcagtcagcgccagttacccacctgacgggtgatattgcggaggaactatatgctgaaacaacatcactgtgggagaagctgcgtgacaacatagctgggtcccatgaggatatgatgtctgctctagaccgaatgcgccagaaatgcaaacgtattatgcgcgcggcatcgtgcaggcatgcatcagacgtgcaccgtcccacagcacacaggttcgcggacccccttccggaacgaccgtctacctcctccaggccttccacttctaggccgtccacatcggcacgaccCtcaacatccacgcgtcctaggccggcgGtaaggcctgtacaaccatctacgataattggaccgcacaacgaaggtagcacgcaaatggcctacaccagtaacaacaggagggagtcagtggcatcaagggttcacatcggtaccgggaagtacagcggtgatcccttctatTccgcatgcaagtaccataggtcaatgggagggtttgcaccgtacgcaggatccagccaactggttccccccatgcgtacagaagctggaagctcacagttccaaggagggttttctggtagtccaataaacgcacacggtatacctcaagttaacatgcccatgtttTcgacgggtacaaacgatctgtggcaaggagctcagacatacaacactggggggatataccaaatgtccataaatgaagatacacaaccacaaggagcaagctttctggatatgttaggccatggagattggttgttcagtcaaccacctatcatgcaaccacaaacaacaggaatgtacaaccccgaacaaaggatggaatatgctggcagcacacaatcctacggagaaccatgcagctacggtggGggGtcgtccacagcacatcacgagataggaccgtcacaacttgacgaaccgccaccaataactcagccaacccaagactacagccaccttgatttcagccgtgttgatgaggtccgtaggtctgtccgtgaaagacattcacctgaaagattatctttgtcaggacgcagacctccaactggtgctagaagaaAggGAaagaaacaggtcactagcacctcacgaaatttcgatgatgagcctaatgagtag
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| Protein seq | MTPWVEQWSRAALDIVNESRPYDRRTYALYMRWYTAQTRVRLVTIADADIPEMADVHTLYPMQSAPVTHLTGDIAEELYAETTSLWEKLRDNIAGSHEDMMSALDRMRQKCKRIMRAASCRHASDVHRPTAHRFADPLPERPSTSSRPSTSRPSTSARPSTSTRPRPAVRPVQPSTIIGPHNEGSTQMAYTSNNRRESVASRVHIGTGKYSGDPFYSACKYHRSMGGFAPYAGSSQLVPPMRTEAGSSQFQGGFSGSPINAHGIPQVNMPMFSTGTNDLWQGAQTYNTGGIYQMSINEDTQPQGASFLDMLGHGDWLFSQPPIMQPQTTGMYNPEQRMEYAGSTQSYGEPCSYGGGSSTAHHEIGPSQLDEPPPITQPTQDYSHLDFSRVDEVRRSVRERHSPERLSLSGRRPPTGARRKGKKQVTSTSRNFDDEPNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28204 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020550 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020410 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026030 | RBH | 0.0 | 0.0 | 2.512959 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020260 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0239300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020040 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0226800 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020260 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020350 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003560 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003490 | SBH | 0.0 | 0.0 | 0.0 |
