Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0009260 | OGI:03017700 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:6756650-6764711 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaactcacgcggaagtcctggagggcggagaaaatcctgagcatcacaagtcgcgacctcacagggaggggcggcggcgctcgccgtgaggcgcgggagggggcgcgctcgcggtggtccacggtgaagtgcggcttgctcgccgtggggagtgcggtaaagagtggctcctcctcatctagcagtctctgctccagtcgtctggttccccccgccagccgccactcgcgcatttcgtcgaacgccttcgcctccatcccctcccaccaatcaatccacgtgctccagaaccctaaccctcgtgggggcgacgggggagaggttggcatctggcgatggcgtgttgctgcctccgtgccagcacggcgccccgcttcctcctcttccgcgccgccgcgcggcgagccccattgccggtcgcggtttccaggaaggtacatgctatagcgcccccttctcttccttctgatcccttttccttggggagtgcacgaatcgaaaacaatcagcatattagctagacgcaatgaggtttggggcagcgcacagccattccaccaatgcttcaatgacattgccaatgtttgttgttcatcgggccactgttgtaatgttatgctgcaaattagactatccaaacatttttttctcttattatagatgatagttattcaagggttatatacggtcacactgtcattcaatccaatgatttgaatgtaagataattaatgttactgaaattttctatgtaatatcagggtttctcggaacagtccgtattgccaatcacagacatgatcgagaattttcaaggaccatccatggagaacattccacgaattccattatatgatgatagcttgccctcaagcttgttgacaacttctccgaatcctagtgatagtgtagctcatgctgacccttcaaagagtagaataatgcttgttgatggaacctcagtaatgtacagatcctactacaagatattgggtaaatgtttcctgattctctttgttacatctgtattggtatattatgtttggcttctcctccttatcaaggtaaatgcatgtttagaaaataagtgttttgatatttatatttaaactaaattccactggcatgattaatacatgggaactgaacatttttattcttcctataatgtgaaggtacaacagaatgttgcaatatgtcctagatacacacagacacatatgcacaaagggcaaaagaagttgtacatgtgcccacacttgatgttttatttcatgacatgaaaacattttctcaatttattctcataatttgggcatgatcttttgataaaaaaaatatgggcatggttttttgtggtttaacttctctgctgctttcctaccctgagaacacccatccattatctcagtatatatctgtcttgttgaactgtgctatgctgtcatagcatcttataagcagcagaaagtttcattattggtttccggtagtatgttcctttctaattcctttaggataatcatgtcaaaggcactcaaacaaaatcatgttttgcaaaactaccatagtatttttctgcacaaaactggttcagctgctcacattaaagagcactaaaatccagggttaatttagagttaggtgcccaattgcattaattgttggattcaacagctttattttttttcctcatgtatgcagcacagctgcagcatggtcaattggagcatgctgatggaaatggagactgggttttaactatatttaaagctctgtcactggtaagtatatttttttatagatttttttgtggcatacttgttaataagcttaaatttattcatagttcgttttccgggtccctttaatgatagtccttttttttggttgcttcacctaatgttcgtctgaaacgcatcttctaggcttctagcacaatggtcttcatctgtgtttctagttaaggttgactatggtacatgtgtttgtattttgttctcattacaaatctatcatcgtacaagtaggaagtgcaacattgttgaagtggagaaatattaagcaacgtcttttgtagataagcaaggttttcaaactgctatgttgcaaaacgtggattgggtagtgaaattttgacacacatgctgtctttaagtggcattgtttaatgaaccagcatgagataagacttacttgcgatgaataagtgtgatgacagaagatatacttttttctttagtatgcttgagatgaactgttggtatttggagttgttggaaactgatgatttactaaaaacatcgcctgtttgaaaaaaaaaggagtatatgttagcctcataagtttatccccggttgacatctgtcctttgtggatcgttatagatttttatcatgtggcggtgttacaattcaacatgttaaccttctgcctctacacagaatcttcttttctcgttgtaatattttatgacatgcgttcctttgttgtgattccacttgattttgtttataacatgtgtgatccctattataactacattgctttttatatctccaggttctagatatgctggagttcattccatctcatgcagcggtacgctcatcttttttgtagcctaaaattatatggtcttgttcatatctgtcatttttctcatggaacttttgttaaaataaagtgttttagaacattgttggatgaatcatagagaatttttaaaacccttatatataactaagatcacagacaccccttgcaattccaatcatatttcttgctaacaaaatgtgaaagtttcatgtctatccttaggaactggggagcattaacacatggtgctaaaccatggtaatgagaagtgcatataagcaacttaaattgtatgtttagcccataattaaggattcaagggccaatgcgccaaaggagtatttattttaccattatactggaacataatacttaatatttccagaatatttagaggttactggcttactgctaggaaaccaataaccaggtgcagtgtaagcatcatttgtagaaaccacagtttgtttctgtatgtggttttatgttttatgcctcttagcattccttttccttatggtactttgaacacatatgcaggtggtgtttgaccatgatggtgagcttcttcaattggataattctcatattcactgagtaaactttcactttattattttagtattttgctgtgattgtttgttgattgctctctgcagcaaacacttggtaaatttttctctgtaagctttgagcatacgtagcatgagatcttgtcctgtctgcaacttgttaaatggcaacggatggtggcagtggtcagcagtgcctgtaatgggaggtctagcctcctggaaacagagctcaaggaatcttgagtctctgtcacctcttcatataatgtcaaatctgtccttaaatcctggcttaaaacatacatgctcttgaagaatttcttgtgcttcttgtgtatgtaactcatatcaagacagagtagtagctgagaaataatatgaatcaggaaagaaacaaaattctccatctgtctttttaagaaatgcaatatattaagacaaaaccttccactttcctgctcatatatcccattctctgatttgttcctttaattgctgattggaacaactggctttttcctcactttcttttcttactaatccttgttgaagtgtactatgatttccctttttttttctgcacaaaggatagtatttgtagattttgatatgacaacaaataaatgttattggcctcccatgtgattttatctaatatagttcaattcaagatgcatggcttaagtttaaatccatataaatgtttctgtggagggattctacttgtttggatctacatcccctgatttattagatcataagaaaaatcccggcatctttactacgaaatttgaaatgatacatttccttaaaattcttagagtaacaaataagtggccaaacttttcttttcaggagtcccttatggtcattatactgccatgccatccaaagaatgtcacatggcaaaaggtaagagtgatatactgaagtaacttgataggatcatgggattcatgggagaatgtaaccgttggattcatctaagattttaggcataaccacatctttatgtgatggatgtcctggatttatgtcgcactttatgttagtccattacttagccaagtatcaaagcagtaggagtgatttaacatgaccttccaaatgcctgcctttcatttcttttgtgacttttaggtagatactgcttatttctgatcctatttcaaatcatccttttcttttcccctagtagaataatacgatgatatttcattttatatttgggaatgatagtttaatactatatatggtttttacacttgtgtaccctggctcatctgtatttgctttggggcttctggagactggacttgtttctagcctgctgggctggaacaatccatcttacttatttcccattttactttccttttctattactcttatatagttgtacactgaagaacaattaaaatttcaattggaagtaatgtcttgcaatgttttcaatcctataaaagcatgaaactgtcttttttttttcaggaatgacttttcgtcacatgttatacccttcctacaagagcaaccgcatcccgacaccagacaccattgtccagggcatgcaatacttgaaggcatctattaaagcgatgtcaatcaaagtgattgaggtaaaagatatattagcaagtgtatgattggcattatattctttattatatattttcatttgagttcttaaatgatggttgtaggttcctggtgtcgaagctgatgatgttattggcacactagctgtcagcagtgtatctgcaggctacaaggtaataaaactttctactgtgattatttgtgaacattttattcatgaattgttcttcaatattctcaatggatatttcataagtatctctcttcatgaatcgttctccagtgccgtctttaatctttcacatcatttacaaaagttagtacttataaactgctgaggtgttatagattcactgaaactgtttttatttgttttgaaatgattgaaattttgtaaaagttgattcataactaacttttccaattgcacatgacaaaactgaatgtctggaattaagtcataggtatgttgaattttgtaacaaaaatgcaagaaatacagtgtaactaaaatgtgatgccgttgcagtgtgttggatatgatatcttattgtgtactctggtccttatttgaaggtacggattgtctcccctgataaagacttcttccaaattctttcaccttctttacgtttgctgaggattgctcctcgtggttctgggtaagtgtacttggttttttttgcctttcttgcatgcttactggaatactctaatagctaatcgtttttatttggacatggaggatggtttcatttggagttgaagactttgtcaagagatatggagcactgaaaccatcacagtttgttgacgttgttgcgctttctggagataaagccgacaatataccaggtaccctttatttctattgtgccttatgctacacatctgttctgacatccattcttctttcagactaatttttgttggtagctatgaaaactatgagagaaaggatactaaactttggtctgcattgggttgtatttatttatttatttctcgcaataaattcttgtgcttggctacctttgtttttcttgtccaatatctttcatttcagctctaaaacagaaaaatggaccacagttgcacacgattttgatgtgtcaaagtatttttaagttgataatgtgatagaaaataaagttcatacactgtatataatgtgcttgccgaagaaaatggtggttgcatgatctatagacatagtgatttcattttggttcttctacctatttatttattatttattatgtgctgtaatcttactgtttgataaaaaccttaaatcaactcatcaaatatgttatggaccctatgaagtctactgtcccccatcTttttaaggggaaaaacatgattctcatgtctgaaaattatttcatgttatgatatatgtttgtacgttaccaacacttcaccagtgcaatgcagattcgtaagctaattttctatatatggtagtctatcgaccaagttgtttatgatgtgaccggaaccatgttctttttcaggagttgaagggattggagatattaatgcggtaaaactgataactaagtttggtatgttcttctctttaaagtttttttttagattgtcgccttggtgcgaaccactcgagctaaacacattctgttctaataaaggactgcttgtatacactcaaactactcaagattgaaaagttcatgatttccctgtgatcaatctacctgtttagtcttggttattaagttctactcccctaaaaaatataagtagtttttagctttctcaagtctttcctaaatgtaagtcatcctaaacttctagccaccttttactcctccctttcttccgtgaataattcacattattcaatgtggtataagtaaagggtaacaaggtcgtttgatgtactttattatccctgtacataaatctagaataacttatatttggaatccaagtattctatgttttgagttaggaaatagtgggcatattagctgtcctgataatcctgcaattctccaaaagttataactttgtcattttattggtactcacataggttccttggagaatctgttgaaatctgtggatgaagttgaggaagaacgaattaaacaggtatcattcttaatattatacattagatgagatatcccctcttcgcatttatcagcatgcacttatgcacagaaatgccaagatacagaaactgggttgcatgacgcttttgtttcactagaacagcgcaatacaatgaccccattaaatggcattgatattttaccctttagtataatatgattatcttcttgaatgttgattgcacatactctcttgtcAaatatatcattttttatcttatgacttctcaaatggttgagcaaatcatatttggtgtggtcctttacaggctttgatatctcaatctgaacaagcaatgctttgcaaaagcctggtaatcttttttttatgttgctcaaaagtcctttctattgtcttgatgaatcatgaaatgcaatcatcttccatattatattgtgagattctatctcaaccagactcttctcattgaatttacacttcttgtaggccacattacgttctgaccttccatcctatatggttccttttaagacatcggatcttgtgtttcagaagccaaaggtagcaattgtagcatcatatatttatgaaaacaactaaaccattactaaagtttgtccctctgattcctgcttacactgttattcttgcccgcaatgcttcttcaggatgatggagccaaattcataaaactcttgcgagctttggaagcatatgcagaaggctcgtcagcagacctaatcataagaagagccgcctatctttggaacaaacttaactcatgactatgctgatgtttccagcagtgacaacatacgaacttttcaagcacaaaagttccacctgagaagataggtgccttggtgctatgtttctgtcaaatttggtgcgagcggctcgctgtgctttctggcacaaaaggtggacggtgcatgtttagacaggctgtgcataccatgaaactgataattagttagttttgtagataaaagcacgtcatggctcatgcaatctacagaacatgatattttttgcactctaatgaatggtggctgctggctggaaggtggaagaatggcatgtaggtacctgaaagcttaatcattcgattatgtgcaacttcgtagaaatattatctagtgacatgtcactattcatatgcacaatgataccaagttggtcac
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| CDS seq | atggcgtgttgctgcctccgtgccagcacggcgccccgcttcctcctcttccgcgccgccgcgcggcgagccccattgccggtcgcggtttccaggaagggtttctcggaacagtccgtattgccaatcacagacatgatcgagaattttcaaggaccatccatggagaacattccacgaattccattatatgatgatagcttgccctcaagcttgttgacaacttctccgaatcctagtgatagtgtagctcatgctgacccttcaaagagtagaataatgcttgttgatggaacctcagtaatgtacagatcctactacaagatattggcacagctgcagcatggtcaattggagcatgctgatggaaatggagactgggttttaactatatttaaagctctgtcactggttctagatatgctggagttcattccatctcatgcagcggtggtgtttgaccatgatggaatgacttttcgtcacatgttatacccttcctacaagagcaaccgcatcccgacaccagacaccattgtccagggcatgcaatacttgaaggcatctattaaagcgatgtcaatcaaagtgattgaggttcctggtgtcgaagctgatgatgttattggcacactagctgtcagcagtgtatctgcaggctacaaggtacggattgtctcccctgataaagacttcttccaaattctttcaccttctttacgtttgctgaggattgctcctcgtggttctgggatggtttcatttggagttgaagactttgtcaagagatatggagcactgaaaccatcacagtttgttgacgttgttgcgctttctggagataaagccgacaatataccaggagttgaagggattggagatattaatgcggtaaaactgataactaagtttggttccttggagaatctgttgaaatctgtggatgaagttgaggaagaacgaattaaacaggctttgatatctcaatctgaacaagcaatgctttgcaaaagcctggccacattacgttctgaccttccatcctatatggttccttttaagacatcggatcttgtgtttcagaagccaaaggatgatggagccaaattcataaaactcttgcgagctttggaagcatatgcagaaggctcgtcagcagacctaatcataagaagagccgcctatctttggaacaaacttaactcatga
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| Protein seq | MACCCLRASTAPRFLLFRAAARRAPLPVAVSRKGFSEQSVLPITDMIENFQGPSMENIPRIPLYDDSLPSSLLTTSPNPSDSVAHADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLDMLEFIPSHAAVVFDHDGMTFRHMLYPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFGSLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKDDGAKFIKLLRALEAYAEGSSADLIIRRAAYLWNKLNS |
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| Function | DNA polymerase I [UniProtKB/Swiss-Prot:Q04957] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0009260 | OsLaMu_03g0009260.01 | Chr03 | 6756650 | 6764711 | + | NAM | ||
| CDS seq | atggcgtgttgctgcctccgtgccagcacggcgccccgcttcctcctcttccgcgccgccgcgcggcgagccccattgccggtcgcggtttccaggaagggtttctcggaacagtccgtattgccaatcacagacatgatcgagaattttcaaggaccatccatggagaacattccacgaattccattatatgatgatagcttgccctcaagcttgttgacaacttctccgaatcctagtgatagtgtagctcatgctgacccttcaaagagtagaataatgcttgttgatggaacctcagtaatgtacagatcctactacaagatattggcacagctgcagcatggtcaattggagcatgctgatggaaatggagactgggttttaactatatttaaagctctgtcactggttctagatatgctggagttcattccatctcatgcagcggtggtgtttgaccatgatggaatgacttttcgtcacatgttatacccttcctacaagagcaaccgcatcccgacaccagacaccattgtccagggcatgcaatacttgaaggcatctattaaagcgatgtcaatcaaagtgattgaggttcctggtgtcgaagctgatgatgttattggcacactagctgtcagcagtgtatctgcaggctacaaggtacggattgtctcccctgataaagacttcttccaaattctttcaccttctttacgtttgctgaggattgctcctcgtggttctgggatggtttcatttggagttgaagactttgtcaagagatatggagcactgaaaccatcacagtttgttgacgttgttgcgctttctggagataaagccgacaatataccaggagttgaagggattggagatattaatgcggtaaaactgataactaagtttggttccttggagaatctgttgaaatctgtggatgaagttgaggaagaacgaattaaacaggctttgatatctcaatctgaacaagcaatgctttgcaaaagcctggccacattacgttctgaccttccatcctatatggttccttttaagacatcggatcttgtgtttcagaagccaaaggatgatggagccaaattcataaaactcttgcgagctttggaagcatatgcagaaggctcgtcagcagacctaatcataagaagagccgcctatctttggaacaaacttaactcatga
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| Protein seq | MACCCLRASTAPRFLLFRAAARRAPLPVAVSRKGFSEQSVLPITDMIENFQGPSMENIPRIPLYDDSLPSSLLTTSPNPSDSVAHADPSKSRIMLVDGTSVMYRSYYKILAQLQHGQLEHADGNGDWVLTIFKALSLVLDMLEFIPSHAAVVFDHDGMTFRHMLYPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVRIVSPDKDFFQILSPSLRLLRIAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKADNIPGVEGIGDINAVKLITKFGSLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLRSDLPSYMVPFKTSDLVFQKPKDDGAKFIKLLRALEAYAEGSSADLIIRRAAYLWNKLNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0009260 | OsLaMu_03g0009260.02 | Chr03 | 6756675 | 6764711 | + | IsoSeq | ||
| CDS seq | gagaaaatcctgagcatcacaagtcgcgacctcacagggaggggcggcggcgctcgccgtgaggcgcgggagggggcgcgctcgcggtggtccacggtgaagtgcggcttgctcgccgtggggagtgcggtaaagagtggctcctcctcatctagcagtctctgctccagtcgtctggttccccccgccagccgccactcgcgcatttcgtcgaacgccttcgcctccatcccctcccaccaatcaatccacgtgctccagaaccctaaccctcgtgggggcgacgggggagaggttggcatctggcgatggcgtgttgctgcctccgtgccagcacggcgccccgcttcctcctcttccgcgccgccgcgcggcgagccccattgccggtcgcggtttccaggaagggtttctcggaacagtccgtattgccaatcacag
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| Protein seq | EKILSITSRDLTGRGGGARREAREGARSRWSTVKCGLLAVGSAVKSGSSSSSSLCSSRLVPPASRHSRISSNAFASIPSHQSIHVLQNPNPRGGDGGEVGIWRWRVAASVPARRPASSSSAPPRGEPHCRSRFPGRVSRNSPYCQSQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr03 | 6759806 | 6761314 | + | OsLaMu_03g0009260.02 | OsLaMu_03g0009260.01,OsLaMu_03g0009260.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.448498 | 4.004583 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0227300 | RBH | 2.617587 | 1.645949 | 2.970207 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g12610 | RBH | 1.983137 | 1.328975 | 0.668276 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0227300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009490 | RBH | 0.676369 | 6.187786 | 4.094786 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009350 | RBH | 0.866456 | 2.172028 | 2.739727 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009420 | RBH | 0.397909 | 1.632431 | 5.725311 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009340 | RBH | 0.210410 | 0.221216 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009220 | RBH | 2.643843 | 7.729447 | 9.133684 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0111200 | RBH | 5.0508505 | 7.059116 | 7.4932605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009150 | RBH | 0.239326 | 0.398073 | 0.194451 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0111400 | RBH | 6.857615 | 6.6402235 | 24.0538275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009230 | RBH | 0.324249 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009310 | RBH | 0.420576 | 7.503328 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009250 | RBH | 2.355731 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009290 | RBH | 0.543356 | 0.871436 | 0.816122 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009250 | RBH | 0.242075 | 2.266065 | 1.727416 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009130 | RBH | 1.754857 | 4.934769 | 4.962896 |
