Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0008450 | OGI:03016280 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:6155553-6157820 | ||||||||
| Gene Symbol | PPR676, OsPPR676, OsATP4, ATP4 | ||||||||||
| DNA seq | atgttaacagcgctttttattttcaattgaatgaggaatttgactgatgttcttctgtcaatggaagcagaggcaacagtatatgcaagtctgagcatctaccattagaagaaatctgtggagggagaaaacctgagaacacctgcataaattgagatactacgaaaagcccaacaaaaaaaaaatcctatatattcctactccattgttgcgttttacaccgctactaactctgccgatttctttgtctccagccagtgcctagccgcgacgctcgtcgtcaagaaccagccggccttgtcgggcgcctcgtggaacggcgcgtcgagctccttgagatgcgactcgaacacggtggcgagccccttgtaggagtacgtgttcttcccctgccccgtgtggatcccgagcagcggcggcagctcgtccccggcctgcagcgccgcgtacaggtcgctcatccagacgtgcagcgtcgtcagcgcggcgccgacggagaggcccctcaggtgcagcgaccactgcgtctgcgtcctcgtctgcacgttgctgtagatgcccagccgcagcgcgacgtccagcagcgcgcaggccttctccatctggctcaggttcaccgccaggtccatcaggcagttgcagtacggcatcctcaccacgccgcgcgcgccgcccagcagctcgccggcggcctccctcaggggctcgctgggcgccgcggcgtccaccaggagccgcaccacggcgcctagctgcgcgctgctccggtcgatgcacccgatcaccttgcccagctcatccgccggcgtgccggccgccacggtgaggaggcagccgcagaaccggtcgtccggggtgatgccgaggtcctcgagcatggcgaatgacctgaccacgtcgtcggtgcgccccgctttgccgtagcaacggatgagcgaggtgaggatgaagatgttgggcttgaagccagcctccaccatctcgttcaggatgccctccgcacccgcgacattgccggtgcaggagtagagggtcaccatggatgagtagctccagctgtcaggcttggaccgggaatccatggaggccttcatgtccctgaagatctcctccgcctcctcgacgtagccgatgtcggcgcacatcgaaaggagcatgttgtacagcacgacgtcgatgtccatcacctcgtccttcatcacccggtacacggccatggcgtcctcgccgtagcgcgccctggtgtacgcatggaggaggcagcagtacgtcgccttgttgggcaccgcctcctggctgaccagctccctgtggatggtcttcaccacccacggccgcatcgcgcggcccatggcgtccagcaccgtgttgtacacgaccaggtttggcttgacgccggccgccttcatttcctcgaacacgttgagtgcgccgtcgaagttgccgctgctcgagtgcaccctgatcaccgtggcgcatatgacggggtccagctgccatttctcggcgcgggcgcggtcgtacaggcggagggccgtctcggcgtccccggcgcggccgtacgcgtcgatcaccgccgagtacgtgagcatgtccggcgagcacccgaagtccggcatcttctcgaaccactccacggccttgcctggcatgccacaggcgcgcgcgcagctgatgacggtcgagaaggtggcgttgtccggctgcacgccctcgcgcagcatctcctcccagagcgcctcggcgtcgctccagcgccgcctcttgcgcagggccttgagcgcgacgttgtagaggatgacctccttgcgaacctcggcgttccggaggaaccaccgcagcgcgagcacgacggcggcgggcctggcggaggtcgtgttgagcacgatgacggcgtcctgctcggacgggggttccgggaacgcggcctccagcgccgcggcgacgggcgcctccccggcctcgcaggcggcaagcgcggccgccgcggcggcgaggcgggcgcgtcggcccgacccggcgcgcgcgcgggcgagccccgcggcgcgcgggctgttggggttgacccagacgtacctgctcgtattgctcgacctccccggactcggattggcgtcggagggaggcggcggcgggtcttggacggagacacgggcggtggccggagagggagaggggttcttgggttggaaggagagggagattgcgcggtgaggccatgagaggagggaggaaggggaagccatgccgcgcgatgctctctctgtg
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| CDS seq | atggcttccccttcctccctcctctcatggcctcaccgcgcaatctccctctccttccaacccaagaacccctctccctctccggccaccgcccgtgtctccgtccaagacccgccgccgcctccctccgacgccaatccgagtccggggaggtcgagcaatacgagcaggtacgtctgggtcaaccccaacagcccgcgcgccgcggggctcgcccgcgcgcgcgccgggtcgggccgacgcgcccgcctcgccgccgcggcggccgcgcttgccgcctgcgaggccggggaggcgcccgtcgccgcggcgctggaggccgcgttcccggaacccccgtccgagcaggacgccgtcatcgtgctcaacacgacctccgccaggcccgccgccgtcgtgctcgcgctgcggtggttcctccggaacgccgaggttcgcaaggaggtcatcctctacaacgtcgcgctcaaggccctgcgcaagaggcggcgctggagcgacgccgaggcgctctgggaggagatgctgcgcgagggcgtgcagccggacaacgccaccttctcgaccgtcatcagctgcgcgcgcgcctgtggcatgccaggcaaggccgtggagtggttcgagaagatgccggacttcgggtgctcgccggacatgctcacgtactcggcggtgatcgacgcgtacggccgcgccggggacgccgagacggccctccgcctgtacgaccgcgcccgcgccgagaaatggcagctggaccccgtcatatgcgccacggtgatcagggtgcactcgagcagcggcaacttcgacggcgcactcaacgtgttcgaggaaatgaaggcggccggcgtcaagccaaacctggtcgtgtacaacacggtgctggacgccatgggccgcgcgatgcggccgtgggtggtgaagaccatccacagggagctggtcagccaggaggcggtgcccaacaaggcgacgtactgctgcctcctccatgcgtacaccagggcgcgctacggcgaggacgccatggccgtgtaccgggtgatgaaggacgaggtgatggacatcgacgtcgtgctgtacaacatgctcctttcgatgtgcgccgacatcggctacgtcgaggaggcggaggagatcttcagggacatgaaggcctccatggattcccggtccaagcctgacagctggagctactcatccatggtgaccctctactcctgcaccggcaatgtcgcgggtgcggagggcatcctgaacgagatggtggaggctggcttcaagcccaacatcttcatcctcacctcgctcatccgttgctacggcaaagcggggcgcaccgacgacgtggtcaggtcattcgccatgctcgaggacctcggcatcaccccggacgaccggttctgcggctgcctcctcaccgtggcggccggcacgccggcggatgagctgggcaaggtgatcgggtgcatcgaccggagcagcgcgcagctaggcgccgtggtgcggctcctggtggacgccgcggcgcccagcgagcccctgagggaggccgccggcgagctgctgggcggcgcgcgcggcgtggtgaggatgccgtactgcaactgcctgatggacctggcggtgaacctgagccagatggagaaggcctgcgcgctgctggacgtcgcgctgcggctgggcatctacagcaacgtgcagacgaggacgcagacgcagtggtcgctgcacctgaggggcctctccgtcggcgccgcgctgacgacgctgcacgtctggatgagcgacctgtacgcggcgctgcaggccggggacgagctgccgccgctgctcgggatccacacggggcaggggaagaacacgtactcctacaaggggctcgccaccgtgttcgagtcgcatctcaaggagctcgacgcgccgttccacgaggcgcccgacaaggccggctggttcttgacgacgagcgtcgcggctaggcactggctggagacaaagaaatcggcagagttagtagcggtgtaa
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| Protein seq | MASPSSLLSWPHRAISLSFQPKNPSPSPATARVSVQDPPPPPSDANPSPGRSSNTSRYVWVNPNSPRAAGLARARAGSGRRARLAAAAAALAACEAGEAPVAAALEAAFPEPPSEQDAVIVLNTTSARPAAVVLALRWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAGDAETALRLYDRARAEKWQLDPVICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFCGCLLTVAAGTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGVVRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALTTLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDKAGWFLTTSVAARHWLETKKSAELVAV |
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| Function | Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic [UniProtKB/Swiss-Prot:Q10PZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0008450 | OsLaMu_03g0008450.01 | Chr03 | 6155553 | 6157820 | - | NAM | ||
| CDS seq | atggcttccccttcctccctcctctcatggcctcaccgcgcaatctccctctccttccaacccaagaacccctctccctctccggccaccgcccgtgtctccgtccaagacccgccgccgcctccctccgacgccaatccgagtccggggaggtcgagcaatacgagcaggtacgtctgggtcaaccccaacagcccgcgcgccgcggggctcgcccgcgcgcgcgccgggtcgggccgacgcgcccgcctcgccgccgcggcggccgcgcttgccgcctgcgaggccggggaggcgcccgtcgccgcggcgctggaggccgcgttcccggaacccccgtccgagcaggacgccgtcatcgtgctcaacacgacctccgccaggcccgccgccgtcgtgctcgcgctgcggtggttcctccggaacgccgaggttcgcaaggaggtcatcctctacaacgtcgcgctcaaggccctgcgcaagaggcggcgctggagcgacgccgaggcgctctgggaggagatgctgcgcgagggcgtgcagccggacaacgccaccttctcgaccgtcatcagctgcgcgcgcgcctgtggcatgccaggcaaggccgtggagtggttcgagaagatgccggacttcgggtgctcgccggacatgctcacgtactcggcggtgatcgacgcgtacggccgcgccggggacgccgagacggccctccgcctgtacgaccgcgcccgcgccgagaaatggcagctggaccccgtcatatgcgccacggtgatcagggtgcactcgagcagcggcaacttcgacggcgcactcaacgtgttcgaggaaatgaaggcggccggcgtcaagccaaacctggtcgtgtacaacacggtgctggacgccatgggccgcgcgatgcggccgtgggtggtgaagaccatccacagggagctggtcagccaggaggcggtgcccaacaaggcgacgtactgctgcctcctccatgcgtacaccagggcgcgctacggcgaggacgccatggccgtgtaccgggtgatgaaggacgaggtgatggacatcgacgtcgtgctgtacaacatgctcctttcgatgtgcgccgacatcggctacgtcgaggaggcggaggagatcttcagggacatgaaggcctccatggattcccggtccaagcctgacagctggagctactcatccatggtgaccctctactcctgcaccggcaatgtcgcgggtgcggagggcatcctgaacgagatggtggaggctggcttcaagcccaacatcttcatcctcacctcgctcatccgttgctacggcaaagcggggcgcaccgacgacgtggtcaggtcattcgccatgctcgaggacctcggcatcaccccggacgaccggttctgcggctgcctcctcaccgtggcggccggcacgccggcggatgagctgggcaaggtgatcgggtgcatcgaccggagcagcgcgcagctaggcgccgtggtgcggctcctggtggacgccgcggcgcccagcgagcccctgagggaggccgccggcgagctgctgggcggcgcgcgcggcgtggtgaggatgccgtactgcaactgcctgatggacctggcggtgaacctgagccagatggagaaggcctgcgcgctgctggacgtcgcgctgcggctgggcatctacagcaacgtgcagacgaggacgcagacgcagtggtcgctgcacctgaggggcctctccgtcggcgccgcgctgacgacgctgcacgtctggatgagcgacctgtacgcggcgctgcaggccggggacgagctgccgccgctgctcgggatccacacggggcaggggaagaacacgtactcctacaaggggctcgccaccgtgttcgagtcgcatctcaaggagctcgacgcgccgttccacgaggcgcccgacaaggccggctggttcttgacgacgagcgtcgcggctaggcactggctggagacaaagaaatcggcagagttagtagcggtgtaa
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| Protein seq | MASPSSLLSWPHRAISLSFQPKNPSPSPATARVSVQDPPPPPSDANPSPGRSSNTSRYVWVNPNSPRAAGLARARAGSGRRARLAAAAAALAACEAGEAPVAAALEAAFPEPPSEQDAVIVLNTTSARPAAVVLALRWFLRNAEVRKEVILYNVALKALRKRRRWSDAEALWEEMLREGVQPDNATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAGDAETALRLYDRARAEKWQLDPVICATVIRVHSSSGNFDGALNVFEEMKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARYGEDAMAVYRVMKDEVMDIDVVLYNMLLSMCADIGYVEEAEEIFRDMKASMDSRSKPDSWSYSSMVTLYSCTGNVAGAEGILNEMVEAGFKPNIFILTSLIRCYGKAGRTDDVVRSFAMLEDLGITPDDRFCGCLLTVAAGTPADELGKVIGCIDRSSAQLGAVVRLLVDAAAPSEPLREAAGELLGGARGVVRMPYCNCLMDLAVNLSQMEKACALLDVALRLGIYSNVQTRTQTQWSLHLRGLSVGAALTTLHVWMSDLYAALQAGDELPPLLGIHTGQGKNTYSYKGLATVFESHLKELDAPFHEAPDKAGWFLTTSVAARHWLETKKSAELVAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.213746 | 0.611406 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0215900 | RBH | 1.896029 | 0.549670 | 0.503520 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11670 | RBH | 1.282194 | 0.369699 | 0.129616 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0215900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008540 | RBH | 0.271479 | 0.0 | 0.448032 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008510 | RBH | 0.283213 | 0.0 | 0.422012 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008590 | RBH | 0.743377 | 0.0 | 0.291930 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008600 | RBH | 0.031339 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008460 | RBH | 2.810674 | 0.0 | 0.498570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0102200 | RBH | 7.209161 | 4.2131285 | 0.881451 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008390 | RBH | 0.484767 | 0.0 | 0.053772 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0102500 | RBH | 3.148426 | 1.314338 | 2.743484 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008440 | RBH | 0.209851 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008500 | RBH | 0.160847 | 1.332028 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008480 | RBH | 1.035242 | 2.784060 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008480 | RBH | 0.470948 | 0.0 | 0.304510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008480 | RBH | 0.414543 | 0.392164 | 0.436731 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008350 | RBH | 0.693701 | 1.925502 | 0.764652 |
