Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0003470 | OGI:03006740 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:2556917-2560372 | ||||||||
| Gene Symbol | RLCK99, OsRLCK99 | ||||||||||
| DNA seq | gaagatcagaatttgcctcgtatttgaagggactaattgatttcctttacatcctaaaattgtaaaaaagtataaacattgtttacatcaattcgtagcccctgaacaggaccaaatgtaaatcagaactatgtaaaaaggtagcagcagattacaagaactataggtacaaaaacaaacacgtccgctaatgccaagtattcgcgtctgtcacgtcagatcctccggtgaaaaaccaacttttctactataggtaaccggagtcgggcgacgtcgtgaacaccggcttgtccttgtccacgacggtggcggccaccgtggcgctgctgctcttccgccggggcttcgcctccccgagcatggtcaccacgtcgcgcatggtgggccggtccttgggtgacttggccgtgcacagcaccgccacccgcagcaccagcagcatctcctcccgtacgtggtcgacgcggccgccgacgctggcgtcgagcagctcctccaccccggtgttgctgcgcagccgctccctgatccacccgacgatgtcctggctctcgccgtactccggctcgatcggccgccgtccggtgaggagctccatgaggacgacaccgaagctgtagatgtcactcttctgatccaccttcagcgtgtacccgtactccggcgcgatgtagccgtacgagccggcgacgacggagacggtctcgtgggcgcgcgccatgacgcgggcgaggccgaagtcggcgatcttggcgtccatgttggcgtcgaggaggacgttgctcgacttgacgtcgcggtggatgaccggcggccggcagtcgtggtgcaggtaggcgagaccggcggcgacgcccgccgccacgttgtaccgcgacacccagtccatcagcatcttgcccttccgctggccgtgcagcgcatcccacaggctgccattgaccatgtactcgtagatcaccatcgtgtccaggttgttgctcacgtagcccagcatgcgcacgacgttccggtgccggagccgcccgaggagcttcacctcggccgcgaactcgcctcccgcctcgacgtccgtccgcccgtccaccgtggtggcctcctcggggcacccggcggcgcgccacagcttcttgacggcgaccacggcgtggtggcgtggcatgtcggcgcggtacaccacccccgtgccgcccatgccgacaatgttagcctccttgatgcacgcgagcacctcggcgctggtgaaactcaaccgctggaacgccgtgaggcgccatggccacgagccgctcccttcttcctccacggcggcatcgtcgcagcatccgccatggacgtaccaccggtggtacagctgcttgccaagaaacatggctccgcatgccacaatcacggcggagatgccgatggcccagccagcggcaatgtgcttcatgtgtgagcggcgaaggtcatacgattccgacgacgatgaccggagagagcttgccccgcacggaggcaggacgccgccacagagtcccgggttcccggcaaggtcgtcggggttgatcgtcctcaggagccccgtcgccggcacggggccggtgaggttgttgtacgccaggttcagcatctcgagcgccggcgagctgccgaagttgctcgggatctcgccggagaagaagttgttggagagatcgaggacggacaatgtcggcatcatggcgacagcagcagggatctgccctgtgaaccggttgttccggaggctcagcgaaacgagcctctggcacgacgcgaggctggccgggatcgcgccggatagccggttgttcgacaggtcgagggccgacaacgacgggcaatcggcaagctcgtccggcacgccaccggtcagctcgttgtccgccgccgcgaacgtctgcagcgcagggatggacaggatgttcgacggcagcgccgaccgcagctggttgtgcgagaggtcgatgaaggagagcgacgtcgagagcgccaggtcgtcggggatctcgccggacagctcattgccggcgagctccaggcgctgcagccgcggcagccgcccgagccccaacggcacagtgccgttgagccggttgttgtgcgccctgacgcggacaagcgtcgaacacgtcgtgagccccgcggggatcgcgcccgtgaagacattgttgaacagtatcagcttcgtcaggttgccgctgtcgcagagcccggcgggcaccggcccggacaaggcgttcgtcgacacgtccagccactgcagcggctgcgctttgccgagcgacggcggcaacgggccggtgagtgagttgttccacagctcaagcacctcgagcttggggagctcgccaatgccggccgggatgccgcccttgatcttgttgcacatcaggttaagcagctgcaggttagtgagctgcgccaactccggcgggatcgtgccggtgatcgcgttgtcggagaggtcgagcatgatgagggaggagaggttgccgagctccttcggtatctggccgccaatgttgttcttgtagaggtaaacggtgttgaggtacggcagccggccgagctccggcggaatggggccctctaagctgccgatcgccatgtcgaggtactggagcttggcgagattgccaatggcggccgggatcgcgccgctgaactcgttgtacccgatgatgagctgctccaatgacgagagctcgaacagctcagccgggagagcgccattgaggttgttgcccgagaggcccaagaacttgagcttctggagcttgccatacgtcttcgggatgccgccggagaagaagccacccctgaagtcgagcgtctcgagcgcggtggcgttgccgatgtcggccgggagcgggccggcgaagttgttcccggacgcgttgaggtgcgtcagcgaggcgcacgccccgaggccggccgggaacctgcccttgaagttgttgtcgctgacgtcgagctcgcggagcgtcgggatggacacgagcaccggcggcagctcgccgtcgaacgcgttgctctgcaggacgatcgaggtgagcccggcgaggccgaggatgtcgtccgggatggcgccgctcaggttcatggcggcgaggttgaggcctgtgaccgcgccccgggcgtcgcagcgcacgcccttccatgtgcaatgtggcggagagctccatcctttcagctcccccaatggatcgacgagagacgccttgatggccagcaacgcggcggcctcgtcaccggcattgcacacggcaatgcagctcaagagcgccaagaaggagaaggacaaggtgaagaacaagtgtctagcacttgtcatgctcggttcttctgttcctcccttgtcctctacactcctctggcccctctctctcacacacacacactgtttctagttttgtgttttcattgccttgtttgaagcaatagagaaat
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| CDS seq | atgacaagtgctagacacttgttcttcaccttgtccttctccttcttggcgctcttgagctgcattgccgtgtgcaatgccggtgacgaggccgccgcgttgctggccatcaaggcgtctctcgtcgatccattgggggagctgaaaggatggagctctccgccacattgcacatggaagggcgtgcgctgcgacgcccggggcgcggtcacaggcctcaacctcgccgccatgaacctgagcggcgccatcccggacgacatcctcggcctcgccgggctcacctcgatcgtcctgcagagcaacgcgttcgacggcgagctgccgccggtgctcgtgtccatcccgacgctccgcgagctcgacgtcagcgacaacaacttcaagggcaggttcccggccggcctcggggcgtgcgcctcgctgacgcacctcaacgcgtccgggaacaacttcgccggcccgctcccggccgacatcggcaacgccaccgcgctcgagacgctcgacttcaggggtggcttcttctccggcggcatcccgaagacgtatggcaagctccagaagctcaagttcttgggcctctcgggcaacaacctcaatggcgctctcccggctgagctgttcgagctctcgtcattggagcagctcatcatcgggtacaacgagttcagcggcgcgatcccggccgccattggcaatctcgccaagctccagtacctcgacatggcgatcggcagcttagagggccccattccgccggagctcggccggctgccgtacctcaacaccgtttacctctacaagaacaacattggcggccagataccgaaggagctcggcaacctctcctccctcatcatgctcgacctctccgacaacgcgatcaccggcacgatcccgccggagttggcgcagctcactaacctgcagctgcttaacctgatgtgcaacaagatcaagggcggcatcccggccggcattggcgagctccccaagctcgaggtgcttgagctgtggaacaactcactcaccggcccgttgccgccgtcgctcggcaaagcgcagccgctgcagtggctggacgtgtcgacgaacgccttgtccgggccggtgcccgccgggctctgcgacagcggcaacctgacgaagctgatactgttcaacaatgtcttcacgggcgcgatccccgcggggctcacgacgtgttcgacgcttgtccgcgtcagggcgcacaacaaccggctcaacggcactgtgccgttggggctcgggcggctgccgcggctgcagcgcctggagctcgccggcaatgagctgtccggcgagatccccgacgacctggcgctctcgacgtcgctctccttcatcgacctctcgcacaaccagctgcggtcggcgctgccgtcgaacatcctgtccatccctgcgctgcagacgttcgcggcggcggacaacgagctgaccggtggcgtgccggacgagcttgccgattgcccgtcgttgtcggccctcgacctgtcgaacaaccggctatccggcgcgatcccggccagcctcgcgtcgtgccagaggctcgtttcgctgagcctccggaacaaccggttcacagggcagatccctgctgctgtcgccatgatgccgacattgtccgtcctcgatctctccaacaacttcttctccggcgagatcccgagcaacttcggcagctcgccggcgctcgagatgctgaacctggcgtacaacaacctcaccggccccgtgccggcgacggggctcctgaggacgatcaaccccgacgaccttgccgggaacccgggactctgtggcggcgtcctgcctccgtgcggggcaagctctctccggtcatcgtcgtcggaatcgtatgaccttcgccgctcacacatgaagcacattgccgctggctgggccatcggcatctccgccgtgattgtggcatgcggagccatgtttcttggcaagcagctgtaccaccggtggtacgtccatggcggatgctgcgacgatgccgccgtggaggaagaagggagcggctcgtggccatggcgcctcacggcgttccagcggttgagtttcaccagcgccgaggtgctcgcgtgcatcaaggaggctaacattgtcggcatgggcggcacgggggtggtgtaccgcgccgacatgccacgccaccacgccgtggtcgccgtcaagaagctgtggcgcgccgccgggtgccccgaggaggccaccacggtggacgggcggacggacgtcgaggcgggaggcgagttcgcggccgaggtgaagctcctcgggcggctccggcaccggaacgtcgtgcgcatgctgggctacgtgagcaacaacctggacacgatggtgatctacgagtacatggtcaatggcagcctgtgggatgcgctgcacggccagcggaagggcaagatgctgatggactgggtgtcgcgcttcggtgtcgtcctcatggagctcctcaccggacggcggccgatcgagccggagtacggcgagagccaggacatcgtcgggtggatcagggagcggctgcgcagcaacaccggggtggaggagctgctcgacgccagcgtcggcggccgcgtcgaccacgtacgggaggagatgctgctggtgctgcgggtggcggtgctgtgcacggccaagtcacccaaggaccggcccaccatgcgcgacgtggtgaccatgctcggggaggcgaagccccggcggaagagcagcagcgccacggtggccgccaccgtcgtggacaaggacaagccggtgttcacgacgtcgcccgactccggttacctatag
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| Protein seq | MTSARHLFFTLSFSFLALLSCIAVCNAGDEAAALLAIKASLVDPLGELKGWSSPPHCTWKGVRCDARGAVTGLNLAAMNLSGAIPDDILGLAGLTSIVLQSNAFDGELPPVLVSIPTLRELDVSDNNFKGRFPAGLGACASLTHLNASGNNFAGPLPADIGNATALETLDFRGGFFSGGIPKTYGKLQKLKFLGLSGNNLNGALPAELFELSSLEQLIIGYNEFSGAIPAAIGNLAKLQYLDMAIGSLEGPIPPELGRLPYLNTVYLYKNNIGGQIPKELGNLSSLIMLDLSDNAITGTIPPELAQLTNLQLLNLMCNKIKGGIPAGIGELPKLEVLELWNNSLTGPLPPSLGKAQPLQWLDVSTNALSGPVPAGLCDSGNLTKLILFNNVFTGAIPAGLTTCSTLVRVRAHNNRLNGTVPLGLGRLPRLQRLELAGNELSGEIPDDLALSTSLSFIDLSHNQLRSALPSNILSIPALQTFAAADNELTGGVPDELADCPSLSALDLSNNRLSGAIPASLASCQRLVSLSLRNNRFTGQIPAAVAMMPTLSVLDLSNNFFSGEIPSNFGSSPALEMLNLAYNNLTGPVPATGLLRTINPDDLAGNPGLCGGVLPPCGASSLRSSSSESYDLRRSHMKHIAAGWAIGISAVIVACGAMFLGKQLYHRWYVHGGCCDDAAVEEEGSGSWPWRLTAFQRLSFTSAEVLACIKEANIVGMGGTGVVYRADMPRHHAVVAVKKLWRAAGCPEEATTVDGRTDVEAGGEFAAEVKLLGRLRHRNVVRMLGYVSNNLDTMVIYEYMVNGSLWDALHGQRKGKMLMDWVSRFGVVLMELLTGRRPIEPEYGESQDIVGWIRERLRSNTGVEELLDASVGGRVDHVREEMLLVLRVAVLCTAKSPKDRPTMRDVVTMLGEAKPRRKSSSATVAATVVDKDKPVFTTSPDSGYL |
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| Function | MDIS1-interacting receptor like kinase 1 [UniProtKB/Swiss-Prot:Q9M0G7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0003470 | OsLaMu_03g0003470.01 | Chr03 | 2557164 | 2560372 | - | NAM | ||
| CDS seq | atgacaagtgctagacacttgttcttcaccttgtccttctccttcttggcgctcttgagctgcattgccgtgtgcaatgccggtgacgaggccgccgcgttgctggccatcaaggcgtctctcgtcgatccattgggggagctgaaaggatggagctctccgccacattgcacatggaagggcgtgcgctgcgacgcccggggcgcggtcacaggcctcaacctcgccgccatgaacctgagcggcgccatcccggacgacatcctcggcctcgccgggctcacctcgatcgtcctgcagagcaacgcgttcgacggcgagctgccgccggtgctcgtgtccatcccgacgctccgcgagctcgacgtcagcgacaacaacttcaagggcaggttcccggccggcctcggggcgtgcgcctcgctgacgcacctcaacgcgtccgggaacaacttcgccggcccgctcccggccgacatcggcaacgccaccgcgctcgagacgctcgacttcaggggtggcttcttctccggcggcatcccgaagacgtatggcaagctccagaagctcaagttcttgggcctctcgggcaacaacctcaatggcgctctcccggctgagctgttcgagctctcgtcattggagcagctcatcatcgggtacaacgagttcagcggcgcgatcccggccgccattggcaatctcgccaagctccagtacctcgacatggcgatcggcagcttagagggccccattccgccggagctcggccggctgccgtacctcaacaccgtttacctctacaagaacaacattggcggccagataccgaaggagctcggcaacctctcctccctcatcatgctcgacctctccgacaacgcgatcaccggcacgatcccgccggagttggcgcagctcactaacctgcagctgcttaacctgatgtgcaacaagatcaagggcggcatcccggccggcattggcgagctccccaagctcgaggtgcttgagctgtggaacaactcactcaccggcccgttgccgccgtcgctcggcaaagcgcagccgctgcagtggctggacgtgtcgacgaacgccttgtccgggccggtgcccgccgggctctgcgacagcggcaacctgacgaagctgatactgttcaacaatgtcttcacgggcgcgatccccgcggggctcacgacgtgttcgacgcttgtccgcgtcagggcgcacaacaaccggctcaacggcactgtgccgttggggctcgggcggctgccgcggctgcagcgcctggagctcgccggcaatgagctgtccggcgagatccccgacgacctggcgctctcgacgtcgctctccttcatcgacctctcgcacaaccagctgcggtcggcgctgccgtcgaacatcctgtccatccctgcgctgcagacgttcgcggcggcggacaacgagctgaccggtggcgtgccggacgagcttgccgattgcccgtcgttgtcggccctcgacctgtcgaacaaccggctatccggcgcgatcccggccagcctcgcgtcgtgccagaggctcgtttcgctgagcctccggaacaaccggttcacagggcagatccctgctgctgtcgccatgatgccgacattgtccgtcctcgatctctccaacaacttcttctccggcgagatcccgagcaacttcggcagctcgccggcgctcgagatgctgaacctggcgtacaacaacctcaccggccccgtgccggcgacggggctcctgaggacgatcaaccccgacgaccttgccgggaacccgggactctgtggcggcgtcctgcctccgtgcggggcaagctctctccggtcatcgtcgtcggaatcgtatgaccttcgccgctcacacatgaagcacattgccgctggctgggccatcggcatctccgccgtgattgtggcatgcggagccatgtttcttggcaagcagctgtaccaccggtggtacgtccatggcggatgctgcgacgatgccgccgtggaggaagaagggagcggctcgtggccatggcgcctcacggcgttccagcggttgagtttcaccagcgccgaggtgctcgcgtgcatcaaggaggctaacattgtcggcatgggcggcacgggggtggtgtaccgcgccgacatgccacgccaccacgccgtggtcgccgtcaagaagctgtggcgcgccgccgggtgccccgaggaggccaccacggtggacgggcggacggacgtcgaggcgggaggcgagttcgcggccgaggtgaagctcctcgggcggctccggcaccggaacgtcgtgcgcatgctgggctacgtgagcaacaacctggacacgatggtgatctacgagtacatggtcaatggcagcctgtgggatgcgctgcacggccagcggaagggcaagatgctgatggactgggtgtcgcgcttcggtgtcgtcctcatggagctcctcaccggacggcggccgatcgagccggagtacggcgagagccaggacatcgtcgggtggatcagggagcggctgcgcagcaacaccggggtggaggagctgctcgacgccagcgtcggcggccgcgtcgaccacgtacgggaggagatgctgctggtgctgcgggtggcggtgctgtgcacggccaagtcacccaaggaccggcccaccatgcgcgacgtggtgaccatgctcggggaggcgaagccccggcggaagagcagcagcgccacggtggccgccaccgtcgtggacaaggacaagccggtgttcacgacgtcgcccgactccggttacctatag
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| Protein seq | MTSARHLFFTLSFSFLALLSCIAVCNAGDEAAALLAIKASLVDPLGELKGWSSPPHCTWKGVRCDARGAVTGLNLAAMNLSGAIPDDILGLAGLTSIVLQSNAFDGELPPVLVSIPTLRELDVSDNNFKGRFPAGLGACASLTHLNASGNNFAGPLPADIGNATALETLDFRGGFFSGGIPKTYGKLQKLKFLGLSGNNLNGALPAELFELSSLEQLIIGYNEFSGAIPAAIGNLAKLQYLDMAIGSLEGPIPPELGRLPYLNTVYLYKNNIGGQIPKELGNLSSLIMLDLSDNAITGTIPPELAQLTNLQLLNLMCNKIKGGIPAGIGELPKLEVLELWNNSLTGPLPPSLGKAQPLQWLDVSTNALSGPVPAGLCDSGNLTKLILFNNVFTGAIPAGLTTCSTLVRVRAHNNRLNGTVPLGLGRLPRLQRLELAGNELSGEIPDDLALSTSLSFIDLSHNQLRSALPSNILSIPALQTFAAADNELTGGVPDELADCPSLSALDLSNNRLSGAIPASLASCQRLVSLSLRNNRFTGQIPAAVAMMPTLSVLDLSNNFFSGEIPSNFGSSPALEMLNLAYNNLTGPVPATGLLRTINPDDLAGNPGLCGGVLPPCGASSLRSSSSESYDLRRSHMKHIAAGWAIGISAVIVACGAMFLGKQLYHRWYVHGGCCDDAAVEEEGSGSWPWRLTAFQRLSFTSAEVLACIKEANIVGMGGTGVVYRADMPRHHAVVAVKKLWRAAGCPEEATTVDGRTDVEAGGEFAAEVKLLGRLRHRNVVRMLGYVSNNLDTMVIYEYMVNGSLWDALHGQRKGKMLMDWVSRFGVVLMELLTGRRPIEPEYGESQDIVGWIRERLRSNTGVEELLDASVGGRVDHVREEMLLVLRVAVLCTAKSPKDRPTMRDVVTMLGEAKPRRKSSSATVAATVVDKDKPVFTTSPDSGYL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0003470 | OsLaMu_03g0003470.02 | Chr03 | 2556917 | 2557898 | - | IsoSeq | ||
| CDS seq | caacaacctggacacgatggtgatctacgagtacatggtcaatggcagcctgtgggatgcgctgcacggccagcggaagggcaagatgctgatggactgggtgtcgcggtacaacgtggcggcgggcgtcgccgccggtctcgcctacctgcaccacgactgccggccgccggtcatccaccgcgacgtcaagtcgagcaacgtcctcctcgacgccaacatggacgccaagatcgccgacttcggcctcgcccgcgtcatggcgcgcgcccacgagaccgtctccgtcgtcgccggctcgtacggctacatcgcgccggagtacgggtacacgctgaaggtggatcagaa
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| Protein seq | QQPGHDGDLRVHGQWQPVGCAARPAEGQDADGLGVAVQRGGGRRRRSRLPAPRLPAAGHPPRRQVEQRPPRRQHGRQDRRLRPRPRHGARPRDRLRRRRLVRLHRAGVRVHAEGGSE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.039876 | 43.794991 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0145102 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05140 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0145102 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0003490 | RBH | 0.0 | 0.888634 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003400 | RBH | 0.0 | 14.889585 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0003440 | RBH | 0.0 | 12.363008 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003390 | RBH | 0.010417 | 1.210320 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0003480 | RBH | 0.755517 | 47.820488 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0039600 | RBH | 0.001467 | 1.78977 | 0.0039355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003370 | RBH | 0.0 | 2.339927 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0040600 | RBH | 0.0189575 | 0 | 0.3144945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003480 | RBH | 0.0 | 0.219214 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003460 | RBH | 0.0 | 39.817093 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003410 | RBH | 0.845317 | 38.290535 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003490 | RBH | 0.0 | 1.833851 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012090 | SBH | 0.687408 | 10.825159 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003430 | RBH | 0.0 | 17.454506 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003320 | RBH | 0.0 | 8.352849 | 0.0 |
