Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0001540 | OGI:03002730 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:982100-985687 | ||||||||
| Gene Symbol | CDC2-1, cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1 | ||||||||||
| DNA seq | aaggcaatcgagttgggaggaggaccagcgagcaaccagccccccgcccccaatggcggcagcagccgcagcagcagctttgcccaccgctgccgcttttgcccacctctcctccgattaatcccctcccctcctcttcctcccacttctccgcctcctcttcctcccctcgccgaccttacctactcgcgccgccgccgtcgcattgggcggcaaacggagggggggttaaccctgatggagcaggtgagcgcctcgagcgatctgattcgatttctgttcttgggggactagggggttttgatcctgcaaacctttgcttgtttttgtggctgtgtgtgcggcgggggcggggcgcagtacgagaaggaggagaagattggggagggcacgtacggggtggtgtacagggcgcgggacaaggtcaccaacgagacgatcgcgctcaagaagatccggcttgagcaggaggatgagggcgtcccctccaccgcaatccgcgagatctcgctcctcaaggagatgcatcacggcaacatcgtcaggtcctctctattaacactctgttgttgttaggactttggattgactaagtcatcacggactgattgattggttgcctgattgattgactgattgattgatgtgggcaatacattgagctagcatttgcctttatgcaacagtagctaggcctgattttaggaccattaatcatacattgatcatagttttgtgcagtgtagtaataatgctgttactttggcagcgagatgatttgcattgttggtttgctgagaaactctatcactgcgtgcaggttacacgatgttatccacagtgagaagcgcatatatcttgtctttgagtatctggatctggacctaaagaagttcatggactcttgtccagagtttgcgaaaaaccccactttaattaaggtgagtggccctaaatgcaaaaatatgttgtcatgactcacttctattattttctgcatatggttgaactcgaaatgttggcttgagcattattgatcaatggtttgttatacatcttataacttggaaacaatgtgaaggtggtataagtaaccttactaaagaattactcttggctgcatagaccaaaatgttagtctagtatattctcatttcatctgaaagaattcagcactagtgtcattcaagattttggtgcaaagatgtatgtggaacccgcagtacatcttatgctctccatatttggtttatggactgttgacttgttctgtcgtggtgttccatatcataggaggaaggtgcccggtttgtcattccactagagcaatacttagcataaaccagaatgcacaatttgggaaataggacccatgtgtatgttacttcatgcgctcttcatgtttggactgttgctctgtgactaccatgattttttaggaaaaatgtgcatgtgctctttggacatatatgtgcctacgtgcattttaaaaaactttagagatgcaatggactgacattgtttgggtaaggttgggcttttcatattctcatacacctatcagtaacatgataggaccagttcctaagcaaattgttttatagtacttctgtgctcttctgagggcatagctagtagccatcatggattatctcccctaaataaagagatgcgttgtaaagcaatttttgctccacagtaaatcctgtagaccgtaaataaaatatatcttcactgttagtggggcttctctgtggccaaaaatgtctggcagcgtggcaccaccaccaccagctcagtactgcatgttccccatataggaatcattgctgccatgcttgtttttgggtaactattcagaatttactgcacaaagaactggcactctatttccttctactatcttttttgggtcagaactatcaattctgacagtcaagtttgggaccttgggtcaaagtggtctcaactcatcctgtattttcttttcctcattagcatcgcatatactttgaatctttgcccataaggtattggaagtcatgatgaaattcgcttaaatatgtaatgtggcaacatgtttttatcctttgaatagtgtagcttagtagtatgaagttgaagcagccttacttgatcggagtggctgccttatacagtgaaacaaagtaaagattggcatgattggaagctttcatgcttttcttcattattgtgtctacattcttgttcatgcgaaaaatatgtgtctacattcctgttgcattcatgcttgaccagaaagtgtattagtttattgtggttgcatcttggaatgtgactgttttcttctttctccagtcatatctctatcagatactccgcggcgttgcttactgtcattctcatagagttcttcatcgagatttgaaacctcagaatttattgatagatcggcgtactaatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgcacgtttactcacgaggtactatagatttgtgttcaacattttggtttcttcataaagtacattttttttcgtcataaagttcatttttcatttaccttttctatacactagcacattaactcacaatggatgtctatgggaagtatttttcaggttgtaaccttgtggtatagagctccagagatccttcttggatcaaggcagtattctacaccagttgatatgtggtcagttggttgtatctttgcagaaatggtgaaccagaaaccactgttccctggtgattctgagattgatgaattatttaagatattcaggttctattattgtactgagattacctttttttgttctgttaattgtgtttttgccaactctatgatttatgtgttgtgttctggttacttttgaagggtactaggaactccaaatgaacaaagttggccaggagttagctcattacctgactacaagtctgctttccccaagtggcaggcacaggtatgacaaaacagcataaagattttattaggcgggtgaactgcatccatatactgtgccactaatattccttgactgaaatcttcatcccaggatcttgcaactattgtccctactcttgaccctgctggtttggaccttctctctgtaagtcgaacaccactcacctttgttcattagcatgtcataatataccccaaaaaaaaagtatcccatccttgtctcgtttcactgtcagaaaatgcttcggtacgagccaaacaaaaggatcacagctagacaggctcttgagcatgaatacttcaaggaccttgagatggtacaatgaccctgctatggctttacattgggttggcatatgtatgggctgggctcctcatttcattccttctgtgaacgctgtgcccttcgtttgggcatttttgtcattcagctggatatttcaaatcttgtgtgtttgatatgtattcaggaacgctaaatagatcaccgtcttggtctctatttgttcagagtaaatatcttccaatgctgcctttcagtttccattgaacctattcagatccaaatagcccttcgttgctgtta
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| CDS seq | atgcatcacggcaacatcgtcaggttacacgatgttatccacagtgagaagcgcatatatcttgtctttgagtatctggatctggacctaaagaagttcatggactcttgtccagagtttgcgaaaaaccccactttaattaagtcatatctctatcagatactccgcggcgttgcttactgtcattctcatagagttcttcatcgagatttgaaacctcagaatttattgatagatcggcgtactaatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgcacgtttactcacgaggttgtaaccttgtggtatagagctccagagatccttcttggatcaaggcagtattctacaccagttgatatgtggtcagttggttgtatctttgcagaaatggtgaaccagaaaccactgttccctggtgattctgagattgatgaattatttaagatattcagggtactaggaactccaaatgaacaaagttggccaggagttagctcattacctgactacaagtctgctttccccaagtggcaggcacaggatcttgcaactattgtccctactcttgaccctgctggtttggaccttctctctaaaatgcttcggtacgagccaaacaaaaggatcacagctagacaggctcttgagcatgaatacttcaaggaccttgagatggtacaatga
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| Protein seq | MHHGNIVRLHDVIHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLDPAGLDLLSKMLRYEPNKRITARQALEHEYFKDLEMVQ |
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| Function | Cyclin-dependent kinase A-1 [UniProtKB/Swiss-Prot:P29618] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0001540 | OsLaMu_03g0001540.01 | Chr03 | 982608 | 985687 | + | NAM | ||
| CDS seq | atgcatcacggcaacatcgtcaggttacacgatgttatccacagtgagaagcgcatatatcttgtctttgagtatctggatctggacctaaagaagttcatggactcttgtccagagtttgcgaaaaaccccactttaattaagtcatatctctatcagatactccgcggcgttgcttactgtcattctcatagagttcttcatcgagatttgaaacctcagaatttattgatagatcggcgtactaatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgcacgtttactcacgaggttgtaaccttgtggtatagagctccagagatccttcttggatcaaggcagtattctacaccagttgatatgtggtcagttggttgtatctttgcagaaatggtgaaccagaaaccactgttccctggtgattctgagattgatgaattatttaagatattcagggtactaggaactccaaatgaacaaagttggccaggagttagctcattacctgactacaagtctgctttccccaagtggcaggcacaggatcttgcaactattgtccctactcttgaccctgctggtttggaccttctctctaaaatgcttcggtacgagccaaacaaaaggatcacagctagacaggctcttgagcatgaatacttcaaggaccttgagatggtacaatga
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| Protein seq | MHHGNIVRLHDVIHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLDPAGLDLLSKMLRYEPNKRITARQALEHEYFKDLEMVQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0001540 | OsLaMu_03g0001540.02 | Chr03 | 982608 | 985687 | + | NAM | ||
| CDS seq | atgcatcacggcaacatcgtcaggttacacgatgttatccacagtgagaagcgcatatatcttgtctttgagtatctggatctggacctaaagaagttcatggactcttgtccagagtttgcgaaaaaccccactttaattaagtcatatctctatcagatactccgcggcgttgcttactgtcattctcatagagttcttcatcgagatttgaaacctcagaatttattgatagatcggcgtactaatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgcacgtttactcacgaggttgtaaccttgtggtatagagctccagagatccttcttggatcaaggcagtattctacaccagttgatatgtggtcagttggttgtatctttgcagaaatggtgaaccagaaaccactgttccctggtgattctgagattgatgaattatttaagatattcagggtactaggaactccaaatgaacaaagttggccaggagttagctcattacctgactacaagtctgctttccccaagtggcaggcacaggatcttgcaactattgtccctactcttgaccctgctggtttggaccttctctctgtaagtcgaacaccactcacctttgttcattag
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| Protein seq | MHHGNIVRLHDVIHSEKRIYLVFEYLDLDLKKFMDSCPEFAKNPTLIKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRVLGTPNEQSWPGVSSLPDYKSAFPKWQAQDLATIVPTLDPAGLDLLSVSRTPLTFVH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0001540 | OsLaMu_03g0001540.03 | Chr03 | 982100 | 985578 | + | IsoSeq | ||
| CDS seq | atgaacaaagttggccaggagttagctcattacctgactacaagtctgctttccccaagtggcaggcacaggatcttgcaactattgtccctactcttgaccctgctggtttggaccttctctctaaaatgcttcggtacgagccaaacaaaaggatcacagctagacaggctcttgagcatgaatacttcaaggaccttgagatggtacaatgaccctgctatggctttacattgggttggcatatgtatgggctgggctcctcatttcattccttctgtgaacgctgtgcccttcgtttgggcatttttgtcattcagctggatatttcaaatcttgtgt
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| Protein seq | MNKVGQELAHYLTTSLLSPSGRHRILQLLSLLLTLLVWTFSLKCFGTSQTKGSQLDRLLSMNTSRTLRWYNDPAMALHWVGICMGWAPHFIPSVNAVPFVWAFLSFSWIFQILC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 985193 | 985687 | + | OsLaMu_03g0001540.02 | OsLaMu_03g0001540.02,OsLaMu_03g0001540.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.204759 | 15.735543 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0118400 | RBH | 0.528642 | 2.203038 | 12.716155 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02680 | RBH | 0.385554 | 0.768647 | 1.485236 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0118400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001480 | RBH | 0.118932 | 22.917170 | 7.812791 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0001470 | RBH | 0.157451 | 10.332328 | 2.714063 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001490 | RBH | 0.869004 | 37.874538 | 8.039165 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001470 | RBH | 0.000000 | 1.247469 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001510 | RBH | 4.989659 | 30.269932 | 13.895250 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0016000 | RBH | 10.9636285 | 17.9573415 | 31.644433 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0001480 | RBH | 0.127952 | 4.167858 | 1.183780 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0015800 | RBH | 16.3535065 | 12.545236 | 48.49675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001540 | RBH | 0.413792 | 0.420518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001560 | RBH | 0.174434 | 19.539974 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0001510 | RBH | 0.0 | 25.049101 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0001530 | RBH | 0.163827 | 2.306814 | 2.117957 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0017770 | RBH | 0.296537 | 4.990344 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G001550 | RBH | 0.363262 | 12.183483 | 5.112200 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001390 | RBH | 0.0 | 37.880344 | 7.176113 |
