Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0039110 | OGI:02100580 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:36643636-36645929 | ||||||||
| Gene Symbol | CDPK6, OsCDPK6, OsCPK6 | ||||||||||
| DNA seq | gcgttcatctgcagatcgactccgatcgacggaaggaaacagaggggaagagagaggatcgtcgtcgacgatgatgcggcggcggctgggctgaaagagaaacagcatctcttgaggatcgtcgtttcgttgcatgggcaactactactcgtgcggcgcctcgtccacgtccagcccgacctcaccgtccttggtcgactactactactgctatcatcggtatccaagcagttgcagtagtacaagcacagcaacaagtagcggggggaggatgccgatccgcagccaccagcagaggctgtcgtccccgacggcggtgctggggcacgagacgccggcgctgcgggaggtgtacacggtggggcggaagctggggcaggggcagttcgggacgacgtacctgtgcacgcaggtgtcgacgggggcggagtacgcgtgcaagtcgatcgcgaagaggaagctgctgagcccggaggacgtggaggacgtgcggcgggagatacagataatgcaccacctggcggggcacgggagcgtggtgaccatccagggcgcgtacgaggacaacctgtacgtgcacatcgtgatggagctgtgcgagggcggggagctgttcgaccgcatcgtggagcgcggctacttctcggagcgcaaggccgcggagatcacgcgcgtcatcgtcggggtggtggaggcgtgccactccctgggcgtcatgcaccgcgacctcaagcccgagaacttcctcctcaaggaatcctcctcctcctcctcgctcaaggccatcgacttcggcctctccgtcttcttcaagcccgggcaggtgttcagcgacgtggtggggagcccctactacgtggcgccggaggtgctgtgcaagcactacggccccgaggcggacgtgtggacggcgggcgtcatcgtctacatcctcctcagcggggtgccccccttctgggcggagacgcagcagggcatcttcgacgccgtcctccggggatccctcgacttcgactccgacccatggcccaccatctccgacagcgccaaggacctcatccgccgcatgctccgctccccgcccagggaacgcctcaccgcccaccaggtgctttgccacccctgggtctgcgacgacggcgtcgcccccgaccgccccctcgcccccgccgtcctctcccgcctcaagcagttctccgccatgaacaggctcaagaagatggcgctgcgtgtcatcgcccggaacctctccgaggaggagctcgctggcctcaaggagatgttcaaggccatggacaccgacgccagcggcgccatcaccttcgacgagctcaaggaaggactccgcagatacggctccaacctcagggaggctgagatcagggatctcatggacgccgtaagaccgtcctcacttctctcaatctctcaatcttctttgcatctatatcctcttcttgattaatttgcgcatatatattgcaggccgacgttgacaaaagcggcaccatcgactacgacgagttcatcgccgccaccgtccacctcaacaagctggagcgcgaggagcacctgctcgccgccttcgcctacttcgaccgcgacggcagcggctacatcaccgtcgacgagctcgagcacgcctgcagggaccacaacatggccgacgttggcatcgacgacatcatccgcgaagtcgaccaagacaacgtactttcccctacttccattcaacggcacttacctagctacctccattattcattcattcaattcgtcacaatatgcaggacggccgcatcgactacggcgagttcgtcgcaatgatgaagaagggcgctatcgatatcatcggcaacggaaggctcaccattggaaggccaactacggctacttccgacgatccttctccaacaatctcttcttcctctagatgatgcatcaacgccaaacaaacaaacaatgcaaatatggttcccaattacttcaattcacaactccgactcacggatcgctcgcatggcatgctagctagtagcatatactctatactctcaagattcatcattctttttataccatgcatacagctgattatttcttgggatagaataaaattaagggcatatacctccagagatcgatcaatctatgcatgtatatggttttgttgcggatacatgcatgccaacggaagcaatttgtatatgtgggtacctgatccaagagagtgcatataaagcaatttttcctgtgtatatgtcattttttttaatcatcaattaaaacttgtg
More
|
||||||||||
| CDS seq | atgggcaactactactcgtgcggcgcctcgtccacgtccagcccgacctcaccgtccttggtcgactactactactgctatcatcggtatccaagcagttgcagtagtacaagcacagcaacaagtagcggggggaggatgccgatccgcagccaccagcagaggctgtcgtccccgacggcggtgctggggcacgagacgccggcgctgcgggaggtgtacacggtggggcggaagctggggcaggggcagttcgggacgacgtacctgtgcacgcaggtgtcgacgggggcggagtacgcgtgcaagtcgatcgcgaagaggaagctgctgagcccggaggacgtggaggacgtgcggcgggagatacagataatgcaccacctggcggggcacgggagcgtggtgaccatccagggcgcgtacgaggacaacctgtacgtgcacatcgtgatggagctgtgcgagggcggggagctgttcgaccgcatcgtggagcgcggctacttctcggagcgcaaggccgcggagatcacgcgcgtcatcgtcggggtggtggaggcgtgccactccctgggcgtcatgcaccgcgacctcaagcccgagaacttcctcctcaaggaatcctcctcctcctcctcgctcaaggccatcgacttcggcctctccgtcttcttcaagcccgggcaggtgttcagcgacgtggtggggagcccctactacgtggcgccggaggtgctgtgcaagcactacggccccgaggcggacgtgtggacggcgggcgtcatcgtctacatcctcctcagcggggtgccccccttctgggcggagacgcagcagggcatcttcgacgccgtcctccggggatccctcgacttcgactccgacccatggcccaccatctccgacagcgccaaggacctcatccgccgcatgctccgctccccgcccagggaacgcctcaccgcccaccaggtgctttgccacccctgggtctgcgacgacggcgtcgcccccgaccgccccctcgcccccgccgtcctctcccgcctcaagcagttctccgccatgaacaggctcaagaagatggcgctgcgtgtcatcgcccggaacctctccgaggaggagctcgctggcctcaaggagatgttcaaggccatggacaccgacgccagcggcgccatcaccttcgacgagctcaaggaaggactccgcagatacggctccaacctcagggaggctgagatcagggatctcatggacgccgccgacgttgacaaaagcggcaccatcgactacgacgagttcatcgccgccaccgtccacctcaacaagctggagcgcgaggagcacctgctcgccgccttcgcctacttcgaccgcgacggcagcggctacatcaccgtcgacgagctcgagcacgcctgcagggaccacaacatggccgacgttggcatcgacgacatcatccgcgaagtcgaccaagacaacgacggccgcatcgactacggcgagttcgtcgcaatgatgaagaagggcgctatcgatatcatcggcaacggaaggctcaccattggaaggccaactacggctacttccgacgatccttctccaacaatctcttcttcctctagatga
More
|
||||||||||
| Protein seq | MGNYYSCGASSTSSPTSPSLVDYYYCYHRYPSSCSSTSTATSSGGRMPIRSHQQRLSSPTAVLGHETPALREVYTVGRKLGQGQFGTTYLCTQVSTGAEYACKSIAKRKLLSPEDVEDVRREIQIMHHLAGHGSVVTIQGAYEDNLYVHIVMELCEGGELFDRIVERGYFSERKAAEITRVIVGVVEACHSLGVMHRDLKPENFLLKESSSSSSLKAIDFGLSVFFKPGQVFSDVVGSPYYVAPEVLCKHYGPEADVWTAGVIVYILLSGVPPFWAETQQGIFDAVLRGSLDFDSDPWPTISDSAKDLIRRMLRSPPRERLTAHQVLCHPWVCDDGVAPDRPLAPAVLSRLKQFSAMNRLKKMALRVIARNLSEEELAGLKEMFKAMDTDASGAITFDELKEGLRRYGSNLREAEIRDLMDAADVDKSGTIDYDEFIAATVHLNKLEREEHLLAAFAYFDRDGSGYITVDELEHACRDHNMADVGIDDIIREVDQDNDGRIDYGEFVAMMKKGAIDIIGNGRLTIGRPTTATSDDPSPTISSSSR |
||||||||||
| Function | Calcium-dependent protein kinase 6 [UniProtKB/Swiss-Prot:Q6K968] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0039110 | OsLaMu_02g0039110.01 | Chr02 | 36643636 | 36645929 | + | NAM | ||
| CDS seq | atgggcaactactactcgtgcggcgcctcgtccacgtccagcccgacctcaccgtccttggtcgactactactactgctatcatcggtatccaagcagttgcagtagtacaagcacagcaacaagtagcggggggaggatgccgatccgcagccaccagcagaggctgtcgtccccgacggcggtgctggggcacgagacgccggcgctgcgggaggtgtacacggtggggcggaagctggggcaggggcagttcgggacgacgtacctgtgcacgcaggtgtcgacgggggcggagtacgcgtgcaagtcgatcgcgaagaggaagctgctgagcccggaggacgtggaggacgtgcggcgggagatacagataatgcaccacctggcggggcacgggagcgtggtgaccatccagggcgcgtacgaggacaacctgtacgtgcacatcgtgatggagctgtgcgagggcggggagctgttcgaccgcatcgtggagcgcggctacttctcggagcgcaaggccgcggagatcacgcgcgtcatcgtcggggtggtggaggcgtgccactccctgggcgtcatgcaccgcgacctcaagcccgagaacttcctcctcaaggaatcctcctcctcctcctcgctcaaggccatcgacttcggcctctccgtcttcttcaagcccgggcaggtgttcagcgacgtggtggggagcccctactacgtggcgccggaggtgctgtgcaagcactacggccccgaggcggacgtgtggacggcgggcgtcatcgtctacatcctcctcagcggggtgccccccttctgggcggagacgcagcagggcatcttcgacgccgtcctccggggatccctcgacttcgactccgacccatggcccaccatctccgacagcgccaaggacctcatccgccgcatgctccgctccccgcccagggaacgcctcaccgcccaccaggtgctttgccacccctgggtctgcgacgacggcgtcgcccccgaccgccccctcgcccccgccgtcctctcccgcctcaagcagttctccgccatgaacaggctcaagaagatggcgctgcgtgtcatcgcccggaacctctccgaggaggagctcgctggcctcaaggagatgttcaaggccatggacaccgacgccagcggcgccatcaccttcgacgagctcaaggaaggactccgcagatacggctccaacctcagggaggctgagatcagggatctcatggacgccgccgacgttgacaaaagcggcaccatcgactacgacgagttcatcgccgccaccgtccacctcaacaagctggagcgcgaggagcacctgctcgccgccttcgcctacttcgaccgcgacggcagcggctacatcaccgtcgacgagctcgagcacgcctgcagggaccacaacatggccgacgttggcatcgacgacatcatccgcgaagtcgaccaagacaacgacggccgcatcgactacggcgagttcgtcgcaatgatgaagaagggcgctatcgatatcatcggcaacggaaggctcaccattggaaggccaactacggctacttccgacgatccttctccaacaatctcttcttcctctagatga
More
|
|||||||
| Protein seq | MGNYYSCGASSTSSPTSPSLVDYYYCYHRYPSSCSSTSTATSSGGRMPIRSHQQRLSSPTAVLGHETPALREVYTVGRKLGQGQFGTTYLCTQVSTGAEYACKSIAKRKLLSPEDVEDVRREIQIMHHLAGHGSVVTIQGAYEDNLYVHIVMELCEGGELFDRIVERGYFSERKAAEITRVIVGVVEACHSLGVMHRDLKPENFLLKESSSSSSLKAIDFGLSVFFKPGQVFSDVVGSPYYVAPEVLCKHYGPEADVWTAGVIVYILLSGVPPFWAETQQGIFDAVLRGSLDFDSDPWPTISDSAKDLIRRMLRSPPRERLTAHQVLCHPWVCDDGVAPDRPLAPAVLSRLKQFSAMNRLKKMALRVIARNLSEEELAGLKEMFKAMDTDASGAITFDELKEGLRRYGSNLREAEIRDLMDAADVDKSGTIDYDEFIAATVHLNKLEREEHLLAAFAYFDRDGSGYITVDELEHACRDHNMADVGIDDIIREVDQDNDGRIDYGEFVAMMKKGAIDIIGNGRLTIGRPTTATSDDPSPTISSSSR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 2.561208 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0832000 | RBH | 0.000000 | 0.000000 | 1.566917 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g58520 | RBH | 0.000000 | 0.0 | 0.912164 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0832000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0039950 | RBH | 0.0 | 4.357053 | 1.691196 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0039970 | RBH | 0.0 | 0.0 | 3.218904 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0039890 | RBH | 0.0 | 2.131417 | 7.172384 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0039510 | RBH | 0.051003 | 0.183013 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0039420 | RBH | 0.0 | 5.708848 | 9.270145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0583700 | RBH | 0.317406 | 2.4807315 | 0.391767 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0039120 | RBH | 0.046273 | 0.251208 | 1.483275 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0615700 | RBH | 0.3436455 | 2.571697 | 0.8812425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0039400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0039310 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0039470 | RBH | 0.0 | 2.967216 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0039470 | RBH | 0.0 | 0.342016 | 0.855761 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G039930 | RBH | 0.081512 | 0.848906 | 0.591420 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0039700 | RBH | 0.517507 | 0.0 | 8.052994 |
