Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0030980 | OGI:02084490 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:30795697-30797792 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccaacgcgcacgcgcgcggcgaagcgaagcgaagcatatggctctcctcctcttgacgctgatcctcctctccggcctcggattcttgCcccgccatgccgacgccgcgaggggctacgtcaccgtctccacatccagcttcgcggtgagctccacctgcgccgacgaactccctggacgaggtacgtagttagtagtagtagacagcgagcgagcggggagatcgaactgttgcttctggtttttggggccggattgtgatgaaagattgggattcgttgcgagtttcagctgcctcgccgcggaacggcacgtcggcggtgctgcggctgacgcaccggcacgggccgtgcgccccggcggggaaggcgtcggcgctgggatcgccgccgtcgttcctcgacacgctgcgcgcggaccagcggcgggcggagtacatacagaggagggtgtcGggggccgccgccgccgcgccggggatgcagctggcgggatccaaggcggcgacggtgccggctaacctggggttctccatcggcacgctgcagtacgtggtgacggtgagcctcggcacgccggcggtggcgcagacgttggaggtggacaccggcagcgacgtgtcgtgggtgcagtgcaagccgtgcccctcgccgccgtgctacagccagagggacccgctcttcgacccgacgcggtcgtcgtcctactccgccgtgccgtgcgccgcggcgtcgtgctcgcagctggcgctgtactccaacggctgctccggcgggcagtgcggctacgtggtcagctacggcgacgggtccacgaccaccggcgtgtacagctccgacacgctgacgctgaccgggtcgaacgcgctcaaGgggttcctcttcggctgcggccacgcgcagcagggcctcttcgccggcgtcgacgggctcctcggcctcggccggcagggccagtccctggtgtcgcaggcgtcgagcacctacggcggcgtcttctcctactgcctaccgccgacgcagaactccgtgggttacatatcgctgggcgggccgagcagcaccgccggcttctccacgacgccgctgctgacggcgtcgaacgacccgacatactacatcgtgatgctcgccggcatcagcgtcggcgggcagccgctgagcatcgacgcgtccgtgttcgcgtcgggcgcggtggtcgacacgggcacggtggtcacgcggctgccgcccacggcgtactcggcgctgcggtccgcgttccgcgccgccatggccccctacggctacccgtcggcgccggcgacggggatcctggacacctgctacgacttcacccggtacggcaccgtgacgctgccgacgatctcgatcgcgttcggcggcggcgcggccatggacctcggcacgtcggggatcctcaccagcgggtgcctggcgttcgcgcccaccggcggcgacagccaggcgtccatcctcgggaacgtgcagcagcgctcgttcgaggtgcgcttcgacggcagcaccgtcggcttcatgcccgcctcctgctgatcgatccatcctaacaactcacccacgacagtattcttctatagtacgtacatggcgtataggtgtatagatatacgcgtacaatgtacgtacgtacacgaggatgataggcgcatatacataacataacactagtagtaggagagtacatagtacacaaatacacaaaggttgtaaggcatagtactttcgttagtggatatacgatttttgagagtaataataataaattagttaaacgggctaaccatgtgcacgtgttaggcgcttgacacgcttggtttgatttggtgcgtcgtggtcagtggcacggtgctcaactgatgtgctacgactaaaagtctaaaactagtggacagttagggggacgtgtgggactatggggccacctcgttctgttgtgcattgtggctgctgtggcccaaggcctagagagaaaacgttatcTtttttttttaatctcgtagataatgctggatctgtattgttgatggttgttagccgaacattcacctttgtgtgaaagtcaagggccatagagt
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| CDS seq | atggctctcctcctcttgacgctgatcctcctctccggcctcggattcttgCcccgccatgccgacgccgcgaggggctacgtcaccgtctccacatccagcttcgcggtgagctccacctgcgccgacgaactccctggacgagctgcctcgccgcggaacggcacgtcggcggtgctgcggctgacgcaccggcacgggccgtgcgccccggcggggaaggcgtcggcgctgggatcgccgccgtcgttcctcgacacgctgcgcgcggaccagcggcgggcggagtacatacagaggagggtgtcGggggccgccgccgccgcgccggggatgcagctggcgggatccaaggcggcgacggtgccggctaacctggggttctccatcggcacgctgcagtacgtggtgacggtgagcctcggcacgccggcggtggcgcagacgttggaggtggacaccggcagcgacgtgtcgtgggtgcagtgcaagccgtgcccctcgccgccgtgctacagccagagggacccgctcttcgacccgacgcggtcgtcgtcctactccgccgtgccgtgcgccgcggcgtcgtgctcgcagctggcgctgtactccaacggctgctccggcgggcagtgcggctacgtggtcagctacggcgacgggtccacgaccaccggcgtgtacagctccgacacgctgacgctgaccgggtcgaacgcgctcaaGgggttcctcttcggctgcggccacgcgcagcagggcctcttcgccggcgtcgacgggctcctcggcctcggccggcagggccagtccctggtgtcgcaggcgtcgagcacctacggcggcgtcttctcctactgcctaccgccgacgcagaactccgtgggttacatatcgctgggcgggccgagcagcaccgccggcttctccacgacgccgctgctgacggcgtcgaacgacccgacatactacatcgtgatgctcgccggcatcagcgtcggcgggcagccgctgagcatcgacgcgtccgtgttcgcgtcgggcgcggtggtcgacacgggcacggtggtcacgcggctgccgcccacggcgtactcggcgctgcggtccgcgttccgcgccgccatggccccctacggctacccgtcggcgccggcgacggggatcctggacacctgctacgacttcacccggtacggcaccgtgacgctgccgacgatctcgatcgcgttcggcggcggcgcggccatggacctcggcacgtcggggatcctcaccagcgggtgcctggcgttcgcgcccaccggcggcgacagccaggcgtccatcctcgggaacgtgcagcagcgctcgttcgaggtgcgcttcgacggcagcaccgtcggcttcatgcccgcctcctgctga
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| Protein seq | MALLLLTLILLSGLGFLPRHADAARGYVTVSTSSFAVSSTCADELPGRAASPRNGTSAVLRLTHRHGPCAPAGKASALGSPPSFLDTLRADQRRAEYIQRRVSGAAAAAPGMQLAGSKAATVPANLGFSIGTLQYVVTVSLGTPAVAQTLEVDTGSDVSWVQCKPCPSPPCYSQRDPLFDPTRSSSYSAVPCAAASCSQLALYSNGCSGGQCGYVVSYGDGSTTTGVYSSDTLTLTGSNALKGFLFGCGHAQQGLFAGVDGLLGLGRQGQSLVSQASSTYGGVFSYCLPPTQNSVGYISLGGPSSTAGFSTTPLLTASNDPTYYIVMLAGISVGGQPLSIDASVFASGAVVDTGTVVTRLPPTAYSALRSAFRAAMAPYGYPSAPATGILDTCYDFTRYGTVTLPTISIAFGGGAAMDLGTSGILTSGCLAFAPTGGDSQASILGNVQQRSFEVRFDGSTVGFMPASC |
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| Function | Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0030980 | OsLaMu_02g0030980.01 | Chr02 | 30795697 | 30797792 | + | NAM | ||
| CDS seq | atggctctcctcctcttgacgctgatcctcctctccggcctcggattcttgCcccgccatgccgacgccgcgaggggctacgtcaccgtctccacatccagcttcgcggtgagctccacctgcgccgacgaactccctggacgagctgcctcgccgcggaacggcacgtcggcggtgctgcggctgacgcaccggcacgggccgtgcgccccggcggggaaggcgtcggcgctgggatcgccgccgtcgttcctcgacacgctgcgcgcggaccagcggcgggcggagtacatacagaggagggtgtcGggggccgccgccgccgcgccggggatgcagctggcgggatccaaggcggcgacggtgccggctaacctggggttctccatcggcacgctgcagtacgtggtgacggtgagcctcggcacgccggcggtggcgcagacgttggaggtggacaccggcagcgacgtgtcgtgggtgcagtgcaagccgtgcccctcgccgccgtgctacagccagagggacccgctcttcgacccgacgcggtcgtcgtcctactccgccgtgccgtgcgccgcggcgtcgtgctcgcagctggcgctgtactccaacggctgctccggcgggcagtgcggctacgtggtcagctacggcgacgggtccacgaccaccggcgtgtacagctccgacacgctgacgctgaccgggtcgaacgcgctcaaGgggttcctcttcggctgcggccacgcgcagcagggcctcttcgccggcgtcgacgggctcctcggcctcggccggcagggccagtccctggtgtcgcaggcgtcgagcacctacggcggcgtcttctcctactgcctaccgccgacgcagaactccgtgggttacatatcgctgggcgggccgagcagcaccgccggcttctccacgacgccgctgctgacggcgtcgaacgacccgacatactacatcgtgatgctcgccggcatcagcgtcggcgggcagccgctgagcatcgacgcgtccgtgttcgcgtcgggcgcggtggtcgacacgggcacggtggtcacgcggctgccgcccacggcgtactcggcgctgcggtccgcgttccgcgccgccatggccccctacggctacccgtcggcgccggcgacggggatcctggacacctgctacgacttcacccggtacggcaccgtgacgctgccgacgatctcgatcgcgttcggcggcggcgcggccatggacctcggcacgtcggggatcctcaccagcgggtgcctggcgttcgcgcccaccggcggcgacagccaggcgtccatcctcgggaacgtgcagcagcgctcgttcgaggtgcgcttcgacggcagcaccgtcggcttcatgcccgcctcctgctga
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| Protein seq | MALLLLTLILLSGLGFLPRHADAARGYVTVSTSSFAVSSTCADELPGRAASPRNGTSAVLRLTHRHGPCAPAGKASALGSPPSFLDTLRADQRRAEYIQRRVSGAAAAAPGMQLAGSKAATVPANLGFSIGTLQYVVTVSLGTPAVAQTLEVDTGSDVSWVQCKPCPSPPCYSQRDPLFDPTRSSSYSAVPCAAASCSQLALYSNGCSGGQCGYVVSYGDGSTTTGVYSSDTLTLTGSNALKGFLFGCGHAQQGLFAGVDGLLGLGRQGQSLVSQASSTYGGVFSYCLPPTQNSVGYISLGGPSSTAGFSTTPLLTASNDPTYYIVMLAGISVGGQPLSIDASVFASGAVVDTGTVVTRLPPTAYSALRSAFRAAMAPYGYPSAPATGILDTCYDFTRYGTVTLPTISIAFGGGAAMDLGTSGILTSGCLAFAPTGGDSQASILGNVQQRSFEVRFDGSTVGFMPASC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.393432 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0720600 | SBH | 0.140717 | 0.144308 | 2.060157 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48860 | RBH | 0.209503 | 0.255407 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0720500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031620 | RBH | 0.081013 | 2.238065 | 3.238246 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031730 | RBH | 0.0 | 0.000000 | 0.595866 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031600 | RBH | 0.273299 | 1.018487 | 0.904393 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031190 | RBH | 0.0 | 0.029618 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031310 | RBH | 0.0 | 7.610498 | 3.853823 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0487900 | RBH | 1.36114 | 22.6225665 | 1.6598915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031070 | RBH | 0.048694 | 0.079654 | 0.562749 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0515900 | SBH | 3.63518 | 17.0418455 | 0.8906425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0031360 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031150 | RBH | 0.366296 | 1.528095 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031520 | RBH | 0.0 | 6.377139 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031360 | RBH | 0.0 | 0.161572 | 0.991393 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012550 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031650 | RBH | 0.000000 | 0.0 | 0.449028 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031400 | RBH | 0.0 | 5.801940 | 1.863016 |
