Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0029240 | OGI:02080280 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:29395978-29398249 | ||||||||
| Gene Symbol | OsFbox106, Os_F0496 | ||||||||||
| DNA seq | aaacatgacaataccactgattgatggtactccatgaatcatacaagcttacatacaacagtttgtttgatacatgaatggcttttacagcatatctaagaatccttttatattgatcaaatgggccaacaattaacgtaaatgataatctcatcctaatatatgccatagaaaatccagcaagtctgcataaagtactgcatgctttcctcaatttcattgaggaaatttattaatatatccaactaatataaaacttagtatcagtctccaacaaatacaaaaaagtatatctaaaggtgaagctaaatggaattataagtataccaagctaaatggagctcgccgataaatgaaaatgcttatcaactctataaatagttagaattagccagaataagaccggaagaacctcatggatggtaggcaagtcacttcttccaggactacatcacgaggcttcataaattgacagaacagaatcatctcatcatccagtagcagaaaactggatgtcagcatctcgggaggcctttctgagcttcaataccctgcgcctgaactttgcctgctcaaggccatccatcgaaggcacaatagtcatcatctctaacattggtgtgttcttgagcagaagcttaacaagatccaatccactcttgctctcatcgatgtacaccatcctaactgccctgagatgcctcagcacgacccctttacctcccataacccaatggtttgctccatcatcgctaccccatctccgcttgcattgcgatggctgcaagaattagcaaccacaccatcagcattgctaccatgttttgcagaaaaaaaaatctagaacagcgaaagaattatatctcaccacaacagacacagagagttcttccacattctgacaatttgcgagcaatggggcaatggatgaagcaccttcttctctcctctctattatacatgacaactgcctcactttgtttagccgcaccttggaccactcctcaggacgtgcaaattgcttcaagttattcacagatcaataattagattcctcaacaaaaaaaactttttcaccagatcaagattcaagagtatgtcatatacctcaatgcaccaaggtgaaagcataaggctctgtacattcccaaccaaagaaagaagctctctgagattaggctcctggagcttgacctgcggcttcttgatggcaagaacgacctcttctaatgaatcgacattgtctataatgtgtctggttgccattgcacccgagtagtggagggtgcgcaacgctggcatgtcagagaaggcaacagaagactgcggagtccaagaacaatccgtgatggcaagcgagcaaagctgcgttgtgccggctaggcagagtgcaccaatgcggcattgttcaaggatcaggtagcggagctgtttgcagtgcgagaagaggtctgcaaagaagtcgtcgccggcaagcggaatggaggcgaggtggaggcgggacaagcgggtgagcgagcagagggacggaagagggtgggcgtagtggtcgaggcgaagggtcaaggatgtgaggttggtgcaggcgattagggaaggcgggaggagggcgaggcgggagcgggggaggtgcagctccaactgctcgaccccgcgcgcggcggcggcggcgagccaggaggcgaggtggtcggcggcggaggcggcgaaggcctggtcgaagaggccgtcgaggccgaggcggaggcggcggagcgggtggtgcggccttgagagcgcggccgtggcggcggccgcgaatgccgccctgcggcgcggcgcggccgggaacgccgcggcgaagtcgaggtccagcgccggcgcggccgccgcgacgccgcgccaccggcgggagatggccgacgcggcgaccgccgacctgaagggcagcttggacacgatcagcccgagcaccgcctcggggaactgctcgaacgggtcgccacctccacctccatctcccccgtccacgccgccgccgccggtggtggcgtacgcgcgggcgtaggtgtagccggcggcgtggtggggtatcaggtgcttggtgcgcatggctgatctcccaaaccccccggccgcctccgggccggctcttcgccccgcgattcgcaggaaggtgtacttttttttttctccccctggaatcggaagcccacgcgcccacgcgacgcgacgctggcggcgagaaggaaaagtacagcgcaaacaggggaaaggaaccgaaagcgcaggc
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| CDS seq | atgcgcaccaagcacctgataccccaccacgccgccggctacacctacgcccgcgcgtacgccaccaccggcggcggcggcgtggacgggggagatggaggtggaggtggcgacccgttcgagcagttccccgaggcggtgctcgggctgatcgtgtccaagctgcccttcaggtcggcggtcgccgcgtcggccatctcccgccggtggcgcggcgtcgcggcggccgcgccggcgctggacctcgacttcgccgcggcgttcccggccgcgccgcgccgcagggcggcattcgcggccgccgccacggccgcgctctcaaggccgcaccacccgctccgccgcctccgcctcggcctcgacggcctcttcgaccaggccttcgccgcctccgccgccgaccacctcgcctcctggctcgccgccgccgccgcgcgcggggtcgagcagttggagctgcacctcccccgctcccgcctcgccctcctcccgccttccctaatcgcctgcaccaacctcacatccttgacccttcgcctcgaccactacgcccaccctcttccgtccctctgctcgctcacccgcttgtcccgcctccacctcgcctccattccgcttgccggcgacgacttctttgcagacctcttctcgcactgcaaacagctccgctacctgatccttgaacaatgccgcattggtgcactctgcctagccggcacaacgcagctttgctcgcttgccatcacggattgttcttggactccgcagtcttctgttgccttctctgacatgccagcgttgcgcaccctccactactcgggtgcaatggcaaccagacacattatagacaatgtcgattcattagaagaggtcgttcttgccatcaagaagccgcaggtcaagctccaggagcctaatctcagagagcttctttctttggttgggaatgtacagagccttatgctttcaccttggtgcattgagcaatttgcacgtcctgaggagtggtccaaggtgcggctaaacaaagtgaggcagttgtcatgtataatagagaggagagaagaaggtgcttcatccattgccccattgctcgcaaattgtcagaatgtggaagaactctctgtgtctgttgtgccatcgcaatgcaagcggagatggggtagcgatgatggagcaaaccattgggttatgggaggtaaaggggtcgtgctgaggcatctcagggcagttaggatggtgtacatcgatgagagcaagagtggattggatcttgttaagcttctgctcaagaacacaccaatgttagagatgatgactattgtgccttcgatggatggccttgagcaggcaaagttcaggcgcagggtattgaagctcagaaaggcctcccgagatgctgacatccagttttctgctactggatga
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| Protein seq | MRTKHLIPHHAAGYTYARAYATTGGGGVDGGDGGGGGDPFEQFPEAVLGLIVSKLPFRSAVAASAISRRWRGVAAAAPALDLDFAAAFPAAPRRRAAFAAAATAALSRPHHPLRRLRLGLDGLFDQAFAASAADHLASWLAAAAARGVEQLELHLPRSRLALLPPSLIACTNLTSLTLRLDHYAHPLPSLCSLTRLSRLHLASIPLAGDDFFADLFSHCKQLRYLILEQCRIGALCLAGTTQLCSLAITDCSWTPQSSVAFSDMPALRTLHYSGAMATRHIIDNVDSLEEVVLAIKKPQVKLQEPNLRELLSLVGNVQSLMLSPWCIEQFARPEEWSKVRLNKVRQLSCIIERREEGASSIAPLLANCQNVEELSVSVVPSQCKRRWGSDDGANHWVMGGKGVVLRHLRAVRMVYIDESKSGLDLVKLLLKNTPMLEMMTIVPSMDGLEQAKFRRRVLKLRKASRDADIQFSATG |
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| Function | F-box/LRR-repeat protein At3g59190 [UniProtKB/Swiss-Prot:Q1PED9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0029240 | OsLaMu_02g0029240.01 | Chr02 | 29395978 | 29398249 | - | NAM | ||
| CDS seq | atgcgcaccaagcacctgataccccaccacgccgccggctacacctacgcccgcgcgtacgccaccaccggcggcggcggcgtggacgggggagatggaggtggaggtggcgacccgttcgagcagttccccgaggcggtgctcgggctgatcgtgtccaagctgcccttcaggtcggcggtcgccgcgtcggccatctcccgccggtggcgcggcgtcgcggcggccgcgccggcgctggacctcgacttcgccgcggcgttcccggccgcgccgcgccgcagggcggcattcgcggccgccgccacggccgcgctctcaaggccgcaccacccgctccgccgcctccgcctcggcctcgacggcctcttcgaccaggccttcgccgcctccgccgccgaccacctcgcctcctggctcgccgccgccgccgcgcgcggggtcgagcagttggagctgcacctcccccgctcccgcctcgccctcctcccgccttccctaatcgcctgcaccaacctcacatccttgacccttcgcctcgaccactacgcccaccctcttccgtccctctgctcgctcacccgcttgtcccgcctccacctcgcctccattccgcttgccggcgacgacttctttgcagacctcttctcgcactgcaaacagctccgctacctgatccttgaacaatgccgcattggtgcactctgcctagccggcacaacgcagctttgctcgcttgccatcacggattgttcttggactccgcagtcttctgttgccttctctgacatgccagcgttgcgcaccctccactactcgggtgcaatggcaaccagacacattatagacaatgtcgattcattagaagaggtcgttcttgccatcaagaagccgcaggtcaagctccaggagcctaatctcagagagcttctttctttggttgggaatgtacagagccttatgctttcaccttggtgcattgagcaatttgcacgtcctgaggagtggtccaaggtgcggctaaacaaagtgaggcagttgtcatgtataatagagaggagagaagaaggtgcttcatccattgccccattgctcgcaaattgtcagaatgtggaagaactctctgtgtctgttgtgccatcgcaatgcaagcggagatggggtagcgatgatggagcaaaccattgggttatgggaggtaaaggggtcgtgctgaggcatctcagggcagttaggatggtgtacatcgatgagagcaagagtggattggatcttgttaagcttctgctcaagaacacaccaatgttagagatgatgactattgtgccttcgatggatggccttgagcaggcaaagttcaggcgcagggtattgaagctcagaaaggcctcccgagatgctgacatccagttttctgctactggatga
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| Protein seq | MRTKHLIPHHAAGYTYARAYATTGGGGVDGGDGGGGGDPFEQFPEAVLGLIVSKLPFRSAVAASAISRRWRGVAAAAPALDLDFAAAFPAAPRRRAAFAAAATAALSRPHHPLRRLRLGLDGLFDQAFAASAADHLASWLAAAAARGVEQLELHLPRSRLALLPPSLIACTNLTSLTLRLDHYAHPLPSLCSLTRLSRLHLASIPLAGDDFFADLFSHCKQLRYLILEQCRIGALCLAGTTQLCSLAITDCSWTPQSSVAFSDMPALRTLHYSGAMATRHIIDNVDSLEEVVLAIKKPQVKLQEPNLRELLSLVGNVQSLMLSPWCIEQFARPEEWSKVRLNKVRQLSCIIERREEGASSIAPLLANCQNVEELSVSVVPSQCKRRWGSDDGANHWVMGGKGVVLRHLRAVRMVYIDESKSGLDLVKLLLKNTPMLEMMTIVPSMDGLEQAKFRRRVLKLRKASRDADIQFSATG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.056063 | 0.660633 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0694100 | RBH | 0.0 | 0.0 | 1.516890 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46690 | RBH | 0.0 | 0.0 | 0.365177 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0694100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029830 | RBH | 0.0 | 0.000000 | 0.523255 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029900 | RBH | 0.0 | 1.523455 | 0.104725 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029760 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029570 | RBH | 0.000000 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0463200 | RBH | 0.1824255 | 5.996098 | 3.2799665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029370 | RBH | 0.0 | 0.0 | 0.058522 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0490900 | RBH | 0.2703735 | 4.961307 | 3.1513215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029670 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029410 | RBH | 0.0 | 1.377323 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029560 | RBH | 0.0 | 0.0 | 0.064761 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029820 | RBH | 0.0 | 0.423739 | 0.591687 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029590 | RBH | 0.0 | 0.0 | 0.373947 |
