Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0017490 | OGI:02050260 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:18253342-18261413 | ||||||||
| Gene Symbol | ANK2, OsANK2, OsTPR047, TPR047, OsTPR47, TPR47 | ||||||||||
| DNA seq | tgtataatactaTtttttttttcttaatgatatagagtttatggaaactatgtgtagtgtcttgggttgagactggcactatgccatcccaatgcagcattgcacccacaccaccccaaacggcagttatagacgcgaaacaccgtgatgttcaacagtcaccaccccggttagctactttgcttcacttacaaaaaggacacccattatggttctgggtatcgaagtctctgggcaaaatgtgagaacacctgtggactcagggaaccaaaggctcttggacaaaaagtgaggcgccttggacaaaacgtgtaggagaggaccagagcgccttgcccaccttgcaaacacccatgctgttcacctagcctctgtgcttgcagatgtcttcaaggactccagagcttccctgcatgttacaagaactatgagagaacatgcaataatttacgatggctttgtccatcgctagatgcagcaggcagaacttttgttccattgtttaaaaaatgaactatgagAaaacaagtacgatagcttcaaaactggtgattcctctagcgcggttgaatgcactatgccattgccaataccttgatgagaaatgcaatgcacacctcctctttagtttacaatttacgttaggaaattcattggcgggaagattccatactcccttgtaactattgtgcctagtggacagtgctgatcaaagagcaagttttggtacagtaagatatggatggcatcaccgctaaagcaaaagtcctgacaaactcccaaaaacagaacggaatttaaataatattcataccccacaagttttcaaggcataagtttatgctaaacctaactacaacataggaaagaagccataggccctgttcttttcagctacttcaccgaactattgccatggatacttgctccacacctctaaagattcattttctacgaaaaaaagaacttttttctaccgcaataccgcattgcttcgaccattagttccaaactagtatttgttaaagtttatttctcaaaatatttacaattaatccaataatgaagtagataatcaacagcattaatccaccaaataatctgtttcaaacaccaaataatctgtttcaaacagagccgtggtgtggccgaaatagacagaaaggataccgtaatgcatcctccatctcagagttccctggatccaacttcaatccatcgtaaagtgtttcgcaagcactctcgtagtcctgatgatacaatgccaagtaaataagcaaataataattttcagcacaaaaccaaaacatagataattgcatcatctattaaccttcagtagcatcagagcagcaccctgtcggtagtaggcctttggccagtcaggccgcaatttcctgcattcataagcatccaacaaagccttgcctccattacccatgtgatgccagcaaaggcttctatttgagaacaaggttgcatcatcagggtaaaggtccagtgcatacattgaataaggaaaagcatgagttagcagatttactgagaacataagaacagttaacgaatctgcaaacacctagaaacaagaaacttgcacattgccacactactatcacactagtatacagaaactggttgagcaaactagacaacaaaactagaaaatacgagagattcttgaaaataaaagtaaggtaatgtaacatttataatatatatatggaattttaaatcataccagttttggattaaaaaaaatcatgttcactagttcttagtccgtgaaaatatggggatttaaagctttctctagaagttcaatgtagtttctctatgtttcagtcacaactcacaagccaagcaactccacaaaagctctactgtagtttgtttcatggcataggagtgacagcaagagcactgagaaagtgagtctcctagaacaattgcgctactctcatcacgcacatattctctctttccgttatgataaacaggtatacctcaacagagcctatgtgaaaatagtataaaatatcaatggtttctacacgaggaaatgcaccacataactgaatgaggaaataatatatctaggacattggcactctataggtatggtccaaagccccaagtttttggtaataccccttgtagcaacattgccaaatcattggtttggctgttccgggaacacaaaaaatagctcctatgtacattgagttagaTtttttttttttttttacccagcggcagtaaattttgtacactgagattttttttttctaaaagaatactttagattaacttgtttgcatgctgagaataagcaaagccaggtcataatctctgtacaatgtatgaaagtacaagttcaaaatagagttgaacaaaatgaggaaacctggtgttctgaagtaccttactgtagaatcctgttgcagaaagataatcctttttctcgaccgccttattccccaatgactttaactctgttgctttccttttactgacaggctcaccctaaaccatcaatatatcaacatataagtgctatgcaggaaaagtcataacaataagcaaccatctaaattcatgcattggaaattcaggaaaattggatttaattatgtaacatcttcagccatcatttacatgattccacatttccacatgcctatgtttcaatgagaaaatctcctaatttccatgcccagtcctgtaagaatgacaacttgctgcctaagttttcacttgtgatgataatcctacaggaactactggtatcggtataacacatcctacgcagacctcaccagccatactctgacacttgtaatgggaagaaagatgagccttcatcattaactaatgacacagtttcctcctacattttatctcctacacatctagagcacttcaagtcttcaacgcatcccttaacttctaatcttaagacagttctcaatcattggtaaccaactcttgtgcagaattgggaaaatgaaccgatgtggtactccttaatgatgtattcaaattaactaatgcaagcttatctttcagtcagaatgggttgttcccaaagtaattaacaagcacaacatgtagatatataaaaaaacgctatatggcacttgtttggagcagcaatggttaaccattaatgcaacatgatacttattcacacattcacatttcaagtgttaggaagataggatcattagatatgaaaattttttatacaattgttttaaattattttaacaaatttcagcccatatgccccctcctgtcaaagcaagtatcactgtagaatgtgtgcaatcaaaccatctttaaccaaacataccctctagaatataaaataaaagttttcactttccatggtctaaaatgaaaggtgttgagtacagttaattttcttatattacactagcagtctagcacaatcgataaaagatattattttgcaagacaaactcagtgacattgttctctagtgttccatttacatattttgagcatgtcaccgtcccaaactttcaaaacatttgaggacaaagggagtagaataaaaggacaaaaaacttgtcatcaaaattgcatcttgttaacttctcagtagatcatgcacagatgacttcatgcactgagaaagacggtaatcatgagctgattttctttatttttaaatcattgtaatatacaaaaaatcatgatgaagcttaacaaatatggagtatataagaaaatatttcttatttttgatggttctccatctctctgcctctcaaaatagaaattgtctctcatatgtttcctataccaagctggataatttgtgtcaaccaaaatgacagtcataactatacaacattcttgaaaataatagtttgcaagcatataaactatatataatatgcgaagaccattcccaaatatgtaccagcttaggcatttagagcattaatcatagtaatggagcaactgagaaactttgaataggaagaaaagaagtagcatgcagttattagccacaaacatatccgtaaccttgaaaaagtacagtgttaagttaccaacagaattctaatctatgtttaaaaaaaactgcaatgattaaagtgcatccttgtagtgagatgaggtaaatcttacattatcagaaatgttacggttggcaccagtctcttccattgagtaattgcactcatttgagccaccctttgcagcagttgagatgcagtctccactgacaacagcactagcctatcatacaaaaataagtgttaccatctgtcccgaagatgacttggcaacatttcataatttttataagtttcataaacggattaacaactttatgtcactagctctgtgttgtgaactgactattgagctcctgttctttttatcctacatgtggcagtcaacttgatcataagttgggctttctaaaaaattttataccataagtagatcgcgggctacaaaaaaatgtgtagtcggtgaacttttaacaagccatatacagaagaaaaatgctgaacttactaaatggagtgtggagaaaatgtcaaaactcataacaaagcaaacagcccaaatatattgtaaggattgaaaaatcaaataaaggtacagtacctcaatcaggaggtttacacatttcaattcaccagcagttatagcagtagctagaggtgtcagatgaccatctaccatcttgttaaactggtgacagacattaggcatatgttcaaataatgatacttgagggaaagaagacaagcaataaacggaaagataaaacgtataggactgtaatgctgcatcaaacatgcagtgaaagtgaatagcttctattgcattacaaaaggaaataagctcattgcaacatacagttacagaatatattgagggtaggcattgttttgttcaaatcttaacaagtataTtttattcaattcaaggtggaggttaaaaggagcaaaatatgattgcccaagtagttaactatcatggcaaataagttgttaattgcccaagaacttactgatgacacaaaaatcagaacttctggaatctgaactcctgaagtgacaacacacgtacagaggtattctggaactccattagaaaactagtataatggcatttccatcctaacaacaaaaTttttttcttatgcgctaaaaatgacagcacaaatctagatgtagcttgcttttgtggagaaaacgatcaggtgaatgaattatcaatatttgttacagagatatggtccattctattaatacatagagggactggcgagtctgtctgctttccttacctgacttaagaacacaattaaacaagcaaaacatagaaaattgaaaatctttcatagaacaactcttgacttggcaactcatgcatgatatcctccatcgtaatcttcatgcttggaacctatatactatacttctctcacacctatccgttgccaacaggcatgagttatgaaatgccaataccatgttgtagcaagacgatccaacaagactcaacagtgaaaggcagcacagcgtaggatgagtgagatggttatgtgaggatggtgcacagcaatccataagtatcaagtaacccaactacaatcaataaaatggaacatgcatgccaacaaggagctgataaaacaagttggcgcagaaagcaaccaattgaacacatgtgttcacttgtccaaaggacaagttaaggcgcaaatggcatgctgtaaaacttacatctgcattgtggtccaataaaatcttcatagcaccatcTttccctttactagcagcaacatgaagtggtgtgccacagtttgcgactgtgtccacacaagctccttttgcaagcaatagctgtactgttccacaatctcctgaaaacaaacaagaaaagccacttgttacaaagttttttttccctttttttttgggcgcgggggggggggggggggggggggggggggttggaaggctataacatctatttaacatattcccacactccacacaagttCcaggtaagtagaaaatattccataagacgaagatctacagttggttggagaaattcgaaaacacaaaatactcaaggtgatgtgaaggcacacatttcaagggctattagcagggtttaccaaactgttttgggtggggttatcgccaccccatggtttggcggttatcgcgataaccgtgcggttgccgcaaggtataccgtggtttcaaaaattgagaaggttaccgcacatgataaccgtgataactgcccgataaccgcacggttttgtaaaccctggctattagaaagccataaaaatacagaaaggaagttagatagcaaatacatgcttacagttcttatccatagggcaaacaatgaaatttgtgtccaaaagaacttttagaggatacatttaatacatactggcacgttttaggcagttccaatgataattacaacaTgacttatcagatttgaataaaattcactatgttatgaactgaggtctgaggaaataaatgtgaacaaatgcaaacagatccctacgacaacaaacaacaacataatctactataagtatataaaaagacaagttttaaaagcaaaaccagctgatgaaaatcaaagaaaagtgtttatagaggggcacctaaatgagtggcgtcatgtagaggggtgcgcccatcatggctggcTttttttacgtcggcaccatgatcaagaggatacttgacagtgcttaaatgtttacaaagtgttgcaataatcagagcagttctacctgtcaagcacacagaaaagcttattgaagcaaagtaactctgtattacattaaaagaaacaatatcagtttttattttctttgaaatatatcgccataaaaagttataatggtaacaccattttctgagagcatggcatctaaaagttgctcctcaagataataaagtatgagaaaaataaaattttaggtatcataggaagtagaaatgtctgactgagtgcacgagataacattgggcagcctagttattatggaacatattgagtattataaccatgggaacataacagaatatggaaatgaacccattcattttgcaagttaggtgaaaattgatgcctattaaacattgcttcacagtgccatgcataatcttatcaaacacaagacaatttgagtacaacctaccatgaagttatcattgagacacattgatcaacaaaacaagctactcaacaagctagtgccccgcaccaatgtttttttagaaaaaaaaggcacattgtagattgtttaaaaatggtttttttttataacgctgaaaaggataaataagaacttaagagtacgtgcacgtgatcattcataacggtgcaaaaaggaggggttttgtatcgggcgagagaatgagagatggaccttcctggtcagcgtcatccacgtccagccgcagctcctcgacgaggtagcggcacacctccagcctccctttgccggcggcgaggtgcagcgCccccatcccgCccatcggcgcacctctcaccctggccgCctgcaccgcctccccgattcgacccctcccatcatccagcaacgtcgccatccctgcaacggctcggaatcccccCAacccccaccaaaaaaaaaTaaaaaaaaaatcagcacaCccacccaagcacccaaaattgaaacgcccgccttcgcgaccgaaaccaaggaaggatgagcagaagccgcgttagtgaattaCccctgacgatgtagaggtccccgttgtgagccgcgtcgaagagcaacttctccaccattccgtcggctgcacgggagagcgaggagcagatcgaattagtcgagttagggtttggtaagggaggcgcttaccgtagccggtgggggcggaatccgatgccatggaggctggCtggtggagagcagagtgggtggtaccgtggtagggttttGgggctggaggagagaagggagaaggggaaagagagagggggagagaggaggcgtacgc
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| CDS seq | atggtggagaagttgctcttcgacgcggctcacaacggggacctctacatcgtcagggggatggcgacgttgctggatgatgggaggggtcgaatcggggaggcggtgcagGcggccagggtgagaggtgcgccgatggGcgggatggggGcgctgcacctcgccgccggcaaagggaggctggaggtgtgccgctacctcgtcgaggagctgcggctggacgtggatgacgctgaccaggaaggtagaactgctctgattattgcaacactttgtaaacatttaagcactgtcaagtatcctcttgatcatggtgccgacgtaaaaaaAgccagccatgatgggcgcacccctctacatgacgccactcatttaggagattgtggaacagtacagctattgcttgcaaaaggagcttgtgtggacacagtcgcaaactgtggcacaccacttcatgttgctgctagtaaagggaaAgatggtgctatgaagattttattggaccacaatgcagattttaacaagatggtagatggtcatctgacacctctagctactgctataactgctggtgaattgaaatgtgtaaacctcctgattgaggctagtgctgttgtcagtggagactgcatctcaactgctgcaaagggtggctcaaatgagtgcaattactcaatggaagagactggtgccaaccgtaacatttctgataatggtgagcctgtcagtaaaaggaaagcaacagagttaaagtcattggggaataaggcggtcgagaaaaaggattatctttctgcaacaggattctacagtaaggtacttcagaacaccagaagcctttgctggcatcacatgggtaatggaggcaaggctttgttggatgcttatgaatgcaggaaattgcggcctgactggccaaaggcctactaccgacagggtgctgctctgatgctactgaagcggtga
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| Protein seq | MVEKLLFDAAHNGDLYIVRGMATLLDDGRGRIGEAVQAARVRGAPMGGMGALHLAAGKGRLEVCRYLVEELRLDVDDADQEGRTALIIATLCKHLSTVKYPLDHGADVKKASHDGRTPLHDATHLGDCGTVQLLLAKGACVDTVANCGTPLHVAASKGKDGAMKILLDHNADFNKMVDGHLTPLATAITAGELKCVNLLIEASAVVSGDCISTAAKGGSNECNYSMEETGANRNISDNGEPVSKRKATELKSLGNKAVEKKDYLSATGFYSKVLQNTRSLCWHHMGNGGKALLDAYECRKLRPDWPKAYYRQGAALMLLKR |
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| Function | Ankyrin-3 [UniProtKB/Swiss-Prot:Q12955] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0017490 | OsLaMu_02g0017490.01 | Chr02 | 18254090 | 18261201 | - | NAM | ||
| CDS seq | atggtggagaagttgctcttcgacgcggctcacaacggggacctctacatcgtcagggggatggcgacgttgctggatgatgggaggggtcgaatcggggaggcggtgcagGcggccagggtgagaggtgcgccgatggGcgggatggggGcgctgcacctcgccgccggcaaagggaggctggaggtgtgccgctacctcgtcgaggagctgcggctggacgtggatgacgctgaccaggaaggtagaactgctctgattattgcaacactttgtaaacatttaagcactgtcaagtatcctcttgatcatggtgccgacgtaaaaaaAgccagccatgatgggcgcacccctctacatgacgccactcatttaggagattgtggaacagtacagctattgcttgcaaaaggagcttgtgtggacacagtcgcaaactgtggcacaccacttcatgttgctgctagtaaagggaaAgatggtgctatgaagattttattggaccacaatgcagattttaacaagatggtagatggtcatctgacacctctagctactgctataactgctggtgaattgaaatgtgtaaacctcctgattgaggctagtgctgttgtcagtggagactgcatctcaactgctgcaaagggtggctcaaatgagtgcaattactcaatggaagagactggtgccaaccgtaacatttctgataatggtgagcctgtcagtaaaaggaaagcaacagagttaaagtcattggggaataaggcggtcgagaaaaaggattatctttctgcaacaggattctacagtaaggtacttcagaacaccagaagcctttgctggcatcacatgggtaatggaggcaaggctttgttggatgcttatgaatgcaggaaattgcggcctgactggccaaaggcctactaccgacagggtgctgctctgatgctactgaagcggtga
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| Protein seq | MVEKLLFDAAHNGDLYIVRGMATLLDDGRGRIGEAVQAARVRGAPMGGMGALHLAAGKGRLEVCRYLVEELRLDVDDADQEGRTALIIATLCKHLSTVKYPLDHGADVKKASHDGRTPLHDATHLGDCGTVQLLLAKGACVDTVANCGTPLHVAASKGKDGAMKILLDHNADFNKMVDGHLTPLATAITAGELKCVNLLIEASAVVSGDCISTAAKGGSNECNYSMEETGANRNISDNGEPVSKRKATELKSLGNKAVEKKDYLSATGFYSKVLQNTRSLCWHHMGNGGKALLDAYECRKLRPDWPKAYYRQGAALMLLKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0017490 | OsLaMu_02g0017490.02 | Chr02 | 18253342 | 18261413 | - | IsoSeq | ||
| CDS seq | gcgtacgcctcctctctccccctctctctttccccttctcccttctctcctccagcccCaaaaccctaccacggtaccacccactctgctctccaccaGccagcctccatggcatcggattccgcccccaccggctacggtaagcgcctcccttaccaaaccctaactcgactaattcgatctgctcctcgctctcccgtgcagccgacggaatggtggagaagttgctcttcgacgcggctcacaacggggacctctacatcgtcagggggatggcgacgttgctggatgatgggaggggtcgaatcggggaggcggtgcagGcggcca
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| Protein seq | AYASSLPLSLSPSPFSPPAPKPYHGTTHSALHQPASMASDSAPTGYGKRLPYQTLTRLIRSAPRSPVQPTEWWRSCSSTRLTTGTSTSSGGWRRCWMMGGVESGRRCRRP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 18254801 | 18255766 | - | OsLaMu_02g0017490.01 | OsLaMu_02g0017490.02,OsLaMu_02g0017490.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.268725 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0494400 | RBH | 0.648874 | 0.308023 | 3.671758 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29210 | RBH | 0.354807 | 0.163441 | 0.985392 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0494400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0017730 | RBH | 0.000000 | 0.0 | 5.941550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0017870 | RBH | 0.000000 | 0.0 | 2.925251 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0017770 | RBH | 0.000000 | 0.0 | 9.321244 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0017670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017610 | RBH | 10.992435 | 6.478523 | 63.582878 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0287100 | RBH | 0.9338285 | 11.2283085 | 51.320341 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0017370 | RBH | 0.033335 | 0.0 | 2.532904 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0308400 | RBH | 0.155502 | 2.516021 | 12.344308 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0017860 | RBH | 0.000000 | 0.313248 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017450 | RBH | 0.225741 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018010 | RBH | 3.657966 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0017760 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0017480 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G017940 | RBH | 0.448913 | 0.537418 | 4.216190 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0017680 | RBH | 2.239634 | 3.203188 | 7.255600 |
