Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLaMu_02g0016210		OGI:02046160 \| 16/16			LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)			Chr02:16604136-16608929		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		atgccatcacctccacttgaccctcaccacgttgccagacctgcacgcgccaacaacagaagtaagaatgtcttcatcgagaatgtcatcaCctgctgcttcagttgcttgaatgttgtttctgaaTCTGaaaattagcagcaaattcaaaagctttcagttttagaaagtggcaccatggcactcaagttcttggttcctttatcacaaaattggcaaattatctaccaccatctgtaccttcatatgcatccaccaagatgttatatgaagctctgtcacaatcacccctcaccaaatgctgcatcaaggagagatccctcaagcgccttgcagcaatcctgtatggctgtggtgcattgatatatacaatgtatattactccaaacttaaagaaaagtAaaaaattccatccagatgtcggtaggaacgtaggctcgtgtagccatggatttatgatgaccaccatttatcttccatgaggacatcataagcatacacttcggtctcgtgtctagcctgttgcattcttcaaacacttcttcagtcttctcatactgactttcccttgcaaaatgcattcaccagggcagtctaagtgcagctggtaggattgcaccctactccatctcatttaagattactatcaacaacatcggttgctctgcatgtgaaataattaatcataattaagaaaaacatgtctaaatgtcttgaactattgaggccattaaagttatttttgaggcacccatctctatttcatcctttatcagatcaaataaaccaaatatggtacagcttgagatataaaccTATATtatattatatgaataactaacctgatcttgtcagtgatgttggtctagaggccccaaaattgctatccattggaaccctgtaatgcacaagttcaaaattttcagtgcagtccagtacaaaccataaggcgaaatcgaggatcacacttctagtgcattccaatttcatacaaatgacagactctagtcatcaaaatatattgttttttcaatatatgttagagtacagaagtcaagagaaacacatggcgaaaagcatatgctgaaagggttacaaatcatgcattcctatctactgaaagatgcaattgaaagcaagaacagacaagaacctctcaactcattcagttctagcttataaccaaaactttagagaaggatcattgtttgctgaaaaataattggttgcaccaaaagagcttatcttcctgcaatttgcagcacaatagcatAATAaaaTatttttttactttattctacttggtgaaataatagcagtgccctgaatatttcgttagggctataacacctcaagattacagctttatatattgcagtgagttctgccgaacaaatgccctgcaagaggcttaatccatactacttgaaatacttttccctgttttcagtggcaaaagaacttttcctctatttgggtattggtaaatctgaagatatatcttggtgactgacagactggcagtcattccagaaacttggcttggctttaataagagctcaggttaggtaattcagaatatccaacaggagaaatacaggattgataagatctaaaatgtaagcacagtacagtaatacagggtaaattcaaacaaacttaagagcaccgaaataccccgatcagatcgaacaatttctactaagcttacataaaacaaaacaaaagaaaaaaaatcccaacctttggaatcattgtcaggaattcgaagaataattcacaactttttctgtctaatttaagtaaacaagaaacctttggaatttcagcacatatataatgattgaaacttgttcttgatgatgcaaattcagttatggagaaactgaaaaatgttaagaacataaagaataaccatatttaaccaacaagtgacaggaatttgtttgaccattgagaagacacaccttgcaaacaagatatatatcgctgcacaattaagcctccaaatgaacgtgcaattaattgaggtggcaaggagatctccttccaggtgaaatcagcaatatgacagcctatctgtatgaatcaccaaatgcaggcatctgttttttttttgttgtcaagttcttcgtcagaattaaaccgggttaaacttgacttcccattaaatttcgagtactgaagaactcatctgaacttttcagtaacctgctattcattgtggctgaaaagaaacgcaactacattttcaagcatgaggctctcccaatagcatgaggagttgtttttctgttagctgtgatgtaggggtgatatcaggtcagcacggtctgcacaaacttatcggtagcatgctgtgctcgattcaggtttgatttgggctctcttgtcgttttcacataggtattcttaattagttgtagatgtcatcaagctaaaaaaaattcgtgtgcatggcctatggaaagaagctcaaaatctttaatgaaaaatgattaagtagcagttttccgaaatctgaacctcaaaatgattttttttttgttggattgctgactcatgtttcagggtcggattgcttcttggttgaaaacttgaaatagcatgtacaagaaaccaacataacagtgggagagcttatcaagatggagttaacgaggcagtaaagcgacatggcaagagattggaatggattggaagaAGgagaggaggaggaggaggaggaggaggagatgggagaatttaccatgaaacaggtcttgccgatctagcaatcgccgagcaggctgaccttgaggctgcgtccttgacatccggcgccttgcggtcggcggcggcgccaccgtcgtccctggggagcagggacagaacggccccgttggctatgcgctgcggtggcgtcgaggaaactggggtgggggtatggggagtgggagcggcgacggcggcgaggaggcggggaatcgccgtgatgggatggaccacgaaggagagggagaaggcggcggcgtcgcgtggcagttggagtgttggacggaggcggtggcgtcgaggaaagtggcgccgtgggttggggggtgtggggcgacggacggaggaggcatggattccgctgcaggcggggcagggcggtcgccggtggcagggcgcgatggcgacggtcgtcggcggcagggcgatgcgcaacggagtgtgggcggagtgggcggcagacgcggagaaaaaggagtgggggaggcgccgctcgataagggcaaccacaatgtgcttaaaaagcaggtaataagcaataaatgcactcatccaaccaggtaatagccattgtggggtaaataacagcaagaatcaggcagtagtgttactaccggcaagaggcaaaTaaaatatagcatgtgtacagtgattttagagagttgcactaaaataatagagtagcagttagccgttacatttgtagcagttgcaacttgttgcaacaacgctacaacctcatccctcaacaaatacaaacacaactcagtcattttctgcatttcatcaaacaagatggatcctcccaacagaggttttatgcacatgcttagctagggctcccaaagccaaacttctggaaatggtagccaaaactccacttctccacagttcccctcaatattctcccaatcccagttttctcaatcctcaacacccacttttcagaacttccacccttttggggctccaaacaactatcaactatatggcaattctactccaagcttccacggttttcagcagcaaacacattggttacactctacaccagtgagttttcaaggttttcgtcctccggaaaattgggtgtactcacctaatcaaattactgggtctgcttcttcccacggatcagaatcagcctctcagtgccctgcaagatatgaagagaacaatgtggttgATatcgaagagtcaagtgacaacagtcaagaggcagggaggagaggaacacgagtcaactggactgaagaggaaaacataagactccttagctcttggctaaataattcagtggatcccataaatggtaatgataagaaggcagaatactattggaaggctgtagctgtagagtttaatagcaatacatctagaagtaaccgcaaaaggacagttgtgcaatgcaagacacattggggtggtgttaagaaggaaattggaaaattttgtggagcttattctcgagctagaagcaccttcagtagtggatattctgatgatatgatcatggagaaagctcatattatgtttaagtcagaaaacaatgaaaaacctttcacattggagtatatgtggagagaactgaaagatcaaccaaaatggcgaagggtcttagaagaagatagtaagaataagaggactaagatctctgaatcaggtgcatacacatcatcgtccaaccaagacacggaggaggagaacagacgcaaaaagaagcgccctgagggacagaaaaaagccaaagccaagttaaaagggagaggtaaaaatgtcgcaccttctcctttgggggaccagccatgtcaagactctgttctttacaatgaagcTAtaaaagtgaaagcagaagcgatgctgaaatctgcagaagcaacatcgaaatcagctgaagcaaagaaggaatacacaagaatggagaagtatcagacatacttaaaatttttggacaaggacacttcaaattttagtgatgcaaaactgaagaggcatgaagctgtcctcgaaaagctagctacagaacttgttgaagaataa More
CDS seq		atgccatcacctccacttgaccctcaccacgttgccagacctgcacgcgccaacaacagaacaaattcaaaagctttcagttttagaaagtggcaccatggcactcaagttcttggttcctttatcacaaaattggcaaattatctaccaccatctgtaccttcatatgcatccaccaagatgttatatgaagctctgtcacaatcacccctcaccaaatgctgcatcaaggagagatccctcaagcgccttgcagcaatcctgtatggctgtggtgcattgatatatacaattgggagagcttatcaagatggagttaacgaggcagtaaagcgacatggcaagagattggaatggattggaagaAGgagaggaggaggaggaggaggaggaggagatgggagaatttaccatgaaacaggtcttgccgatctagcaatcgccgagcaggctgaccttgaggctgcgtccttgacatccggcgccttgcggtcggcggcggcgccaccgtcgtccctggggagcagggacagaacggccccgttggctatgcgctgcggtggcgtcgaggaaactggggtgggggtatggggagtgggagcggcgacggcggcgaggaggcggggaatcgccgtgatgggatggaccacgaaggagagggagaaggcggcggcgtcgcgtggcagttggagtgttggacggaggcggtggcgtcgaggaaagtggcgccgtgggttggggggtgtggggcgacggacggaggaggcatggattccgctgcaggcggggcagggcggtcgccggtggcagggcgcgatggcgacggtcgtcggcggcagggcgatgcgcaacggaggctcccaaagccaaacttctggaaatggtagccaaaactccacttctccacagttcccctcaatattctcccaatcccagttttctcaatcctcaacacccacttttcagaacttccacccttttggggctccaaacaactatcaactatatggcaattctactccaagcttccacggttttcagcagcaaacacattggttacactctacaccagtgagttttcaaggttttcgtcctccggaaaattgggtgtactcacctaatcaaattactgggtctgcttcttcccacggatcagaatcagcctctcagtgccctgcaagatatgaagagaacaatgtggttgATatcgaagagtcaagtgacaacagtcaagaggcagggaggagaggaacacgagtcaactggactgaagaggaaaacataagactccttagctcttggctaaataattcagtggatcccataaatggtaatgataagaaggcagaatactattggaaggctgtagctgtagagtttaatagcaatacatctagaagtaaccgcaaaaggacagttgtgcaatgcaagacacattggggtggtgttaagaaggaaattggaaaattttgtggagcttattctcgagctagaagcaccttcagtagtggatattctgatgatatgatcatggagaaagctcatattatgtttaagtcagaaaacaatgaaaaacctttcacattggagtatatgtggagagaactgaaagatcaaccaaaatggcgaagggtcttagaagaagatagtaagaataagaggactaagatctctgaatcaggtgcatacacatcatcgtccaaccaagacacggaggaggagaacagacgcaaaaagaagcgccctgagggacagaaaaaagccaaagccaagttaaaagggagaggtaaaaatgtcgcaccttctcctttgggggaccagccatgtcaagactctgttctttacaatgaagcTAtaaaagtgaaagcagaagcgatgctgaaatctgcagaagcaacatcgaaatcagctgaagcaaagaaggaatacacaagaatggagaagtatcagacatacttaaaatttttggacaaggacacttcaaattttagtgatgcaaaactgaagaggcatgaagctgtcctcgaaaagctagctacagaacttgttgaagaataa More
Protein seq		MPSPPLDPHHVARPARANNRTNSKAFSFRKWHHGTQVLGSFITKLANYLPPSVPSYASTKMLYEALSQSPLTKCCIKERSLKRLAAILYGCGALIYTIGRAYQDGVNEAVKRHGKRLEWIGRRRGGGGGGGGDGRIYHETGLADLAIAEQADLEAASLTSGALRSAAAPPSSLGSRDRTAPLAMRCGGVEETGVGVWGVGAATAARRRGIAVMGWTTKEREKAAASRGSWSVGRRRWRRGKWRRGLGGVGRRTEEAWIPLQAGQGGRRWQGAMATVVGGRAMRNGGSQSQTSGNGSQNSTSPQFPSIFSQSQFSQSSTPTFQNFHPFGAPNNYQLYGNSTPSFHGFQQQTHWLHSTPVSFQGFRPPENWVYSPNQITGSASSHGSESASQCPARYEENNVVDIEESSDNSQEAGRRGTRVNWTEEENIRLLSSWLNNSVDPINGNDKKAEYYWKAVAVEFNSNTSRSNRKRTVVQCKTHWGGVKKEIGKFCGAYSRARSTFSSGYSDDMIMEKAHIMFKSENNEKPFTLEYMWRELKDQPKWRRVLEEDSKNKRTKISESGAYTSSSNQDTEEENRRKKKRPEGQKKAKAKLKGRGKNVAPSPLGDQPCQDSVLYNEAIKVKAEAMLKSAEATSKSAEAKKEYTRMEKYQTYLKFLDKDTSNFSDAKLKRHEAVLEKLATELVEE
Function		Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLaMu_02g0016210	OsLaMu_02g0016210.01	Chr02	16604136	16608929	+	NAM
CDS seq	atgccatcacctccacttgaccctcaccacgttgccagacctgcacgcgccaacaacagaacaaattcaaaagctttcagttttagaaagtggcaccatggcactcaagttcttggttcctttatcacaaaattggcaaattatctaccaccatctgtaccttcatatgcatccaccaagatgttatatgaagctctgtcacaatcacccctcaccaaatgctgcatcaaggagagatccctcaagcgccttgcagcaatcctgtatggctgtggtgcattgatatatacaattgggagagcttatcaagatggagttaacgaggcagtaaagcgacatggcaagagattggaatggattggaagaAGgagaggaggaggaggaggaggaggaggagatgggagaatttaccatgaaacaggtcttgccgatctagcaatcgccgagcaggctgaccttgaggctgcgtccttgacatccggcgccttgcggtcggcggcggcgccaccgtcgtccctggggagcagggacagaacggccccgttggctatgcgctgcggtggcgtcgaggaaactggggtgggggtatggggagtgggagcggcgacggcggcgaggaggcggggaatcgccgtgatgggatggaccacgaaggagagggagaaggcggcggcgtcgcgtggcagttggagtgttggacggaggcggtggcgtcgaggaaagtggcgccgtgggttggggggtgtggggcgacggacggaggaggcatggattccgctgcaggcggggcagggcggtcgccggtggcagggcgcgatggcgacggtcgtcggcggcagggcgatgcgcaacggaggctcccaaagccaaacttctggaaatggtagccaaaactccacttctccacagttcccctcaatattctcccaatcccagttttctcaatcctcaacacccacttttcagaacttccacccttttggggctccaaacaactatcaactatatggcaattctactccaagcttccacggttttcagcagcaaacacattggttacactctacaccagtgagttttcaaggttttcgtcctccggaaaattgggtgtactcacctaatcaaattactgggtctgcttcttcccacggatcagaatcagcctctcagtgccctgcaagatatgaagagaacaatgtggttgATatcgaagagtcaagtgacaacagtcaagaggcagggaggagaggaacacgagtcaactggactgaagaggaaaacataagactccttagctcttggctaaataattcagtggatcccataaatggtaatgataagaaggcagaatactattggaaggctgtagctgtagagtttaatagcaatacatctagaagtaaccgcaaaaggacagttgtgcaatgcaagacacattggggtggtgttaagaaggaaattggaaaattttgtggagcttattctcgagctagaagcaccttcagtagtggatattctgatgatatgatcatggagaaagctcatattatgtttaagtcagaaaacaatgaaaaacctttcacattggagtatatgtggagagaactgaaagatcaaccaaaatggcgaagggtcttagaagaagatagtaagaataagaggactaagatctctgaatcaggtgcatacacatcatcgtccaaccaagacacggaggaggagaacagacgcaaaaagaagcgccctgagggacagaaaaaagccaaagccaagttaaaagggagaggtaaaaatgtcgcaccttctcctttgggggaccagccatgtcaagactctgttctttacaatgaagcTAtaaaagtgaaagcagaagcgatgctgaaatctgcagaagcaacatcgaaatcagctgaagcaaagaaggaatacacaagaatggagaagtatcagacatacttaaaatttttggacaaggacacttcaaattttagtgatgcaaaactgaagaggcatgaagctgtcctcgaaaagctagctacagaacttgttgaagaataa More
Protein seq	MPSPPLDPHHVARPARANNRTNSKAFSFRKWHHGTQVLGSFITKLANYLPPSVPSYASTKMLYEALSQSPLTKCCIKERSLKRLAAILYGCGALIYTIGRAYQDGVNEAVKRHGKRLEWIGRRRGGGGGGGGDGRIYHETGLADLAIAEQADLEAASLTSGALRSAAAPPSSLGSRDRTAPLAMRCGGVEETGVGVWGVGAATAARRRGIAVMGWTTKEREKAAASRGSWSVGRRRWRRGKWRRGLGGVGRRTEEAWIPLQAGQGGRRWQGAMATVVGGRAMRNGGSQSQTSGNGSQNSTSPQFPSIFSQSQFSQSSTPTFQNFHPFGAPNNYQLYGNSTPSFHGFQQQTHWLHSTPVSFQGFRPPENWVYSPNQITGSASSHGSESASQCPARYEENNVVDIEESSDNSQEAGRRGTRVNWTEEENIRLLSSWLNNSVDPINGNDKKAEYYWKAVAVEFNSNTSRSNRKRTVVQCKTHWGGVKKEIGKFCGAYSRARSTFSSGYSDDMIMEKAHIMFKSENNEKPFTLEYMWRELKDQPKWRRVLEEDSKNKRTKISESGAYTSSSNQDTEEENRRKKKRPEGQKKAKAKLKGRGKNVAPSPLGDQPCQDSVLYNEAIKVKAEAMLKSAEATSKSAEAKKEYTRMEKYQTYLKFLDKDTSNFSDAKLKRHEAVLEKLATELVEE More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.000000	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0463725	SBH	0.000000	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g26740	RBH	0.128127	0.487808	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0463725	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0016460	RBH	0.000000	0.000000	0.358703
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0016590	RBH	0.000000	2.182223	0.205388
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0016490	RBH	0.000000	0.000000	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0016370	RBH	0.000000	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0016290	RBH	0.488300	0.000000	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0263500	RBH	0.3053765	2.1985355	1.826911
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0016060	RBH	0.094403	0.0	0.072135
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0284100	RBH	0.1610585	0.691552	0.758824
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0016610	RBH	0.0	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0016160	RBH	0.0	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0016690	RBH	0.000000	2.991636	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0016480	RBH	0.000000	0.000000	0.163934
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G016660	RBH	0.000000	0.000000	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0016350	RBH	0.000000	0.000000	0.000000

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.