Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0016020 | OGI:02045780 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:16449335-16452389 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgggcctggcgacGAgagagccgaggcgaatcagcgggggacaggtgatgcaccccggttcgatctccttttccagtttccccaattctagctagcagccaagcagaagggctaGgggaaagcagagaatcattgatccctctcgtcgccgttgctctcgtccgcatcacccacattattgtccgcgtggtgtgtgtttgacgaccttccacctggtagagttaagagtttacttcctccacctcgagcgcatgctgttcgatgaaatgcctagcaaggttaaggttcaggttctatcactttcttgtttcaaaattgagtgccatcctgctcttctttgctattttgcacgaccttgtgaaacaataataaaagaaaacagtcttcaatatttggttgtagttctacatgacaagttagttcatctttttggtattacagataacaatgcatcgaatttctttgttgcagattgacaagtcgacattgattcacataaccatttttgcatgccgatggtgttttctgtgctctaaggtctggatctgaatatacaactgaatggcatctatattgtttggtcatagaaatctgtgtgtctttcccctgagaaggcacatattggatgaggtataccagcatggtccttataattgtaccatacagaggaggtggaaaaagccagttgattcagcaagaactcgtctggagggcagaacaagggatcataaactggacaagctgatgattcagctgaagaacctcaggctggctttggatttacatgagttgatatctcagcagaggaacaaatatgcatctctccaactcctctccaggtggagacatgaggtcggcttgaacattgagataggcgctttcctcaagaaatatccccacattttcgacatttatgtgcacccaatcaaaagaaatgaatgctgtaaggtcaccccaaaaatgtctgaattgattgcacaagaagatgcttccatcagggaaaatgagcctgctattgctaagcggctcaagaagcttctcacgctatcgaaggatggaactctgaatatgcatgcattgtggctcgtaagaagagaacttggcctgcctgatgactataggtgctctatactaccaaaccatcagtctgatttttctctaagttcccctgatactctgacattgatcactagggatgaaaatcttgctgtagctgatgttgaagaatggagagcaaaggaatatacagaaaaatggttagctgaatctgagacaaaatatgcttttcctattaactttccaaccggctttaagatcgagaaaggttttaggggaaagcttgggaattggcagaggcttccctacactaaggcttatgagaagaatgaattgcatccaatccgcaatatcgagcggctcgagaaacgtattgttggcattcttcatgagcttttaagcttgacaatagaaaagatgataccacttgagagactgtcacacttcagaaaaccttttgaaatggaggtaaacctgcgggaacttattcttaagcaccctggcattttctacatctcaaccaaaggaagcacacaaactgtccttcttagagagagttacagtaagggatgcctggttcatcctaaccctgtctacaatgtaagaaggaaaatgctagggcttattttgtcaggatgttgtggcgttgatgaaatggacagtccactttggttttctgaggagtacaatcaggaaagcagtaacgagtcatagaatcacatgtgccagacaaataccgaatgccttgttggaagctcaaagtggcatttgtcaaagaactagccatttttaatctctgacattctttacacgagtacataagttgacctaatgatgtcaccactagagttgctgataatggtatgctactcttgagatgtcagtggtagagcatcatctgctgaggaatgtactgattgtgcaagctaagaaattcagttgtcctgaagagtgactagtctgcacccagggaagaatgaatgcatcatggtgctttagcagctaacaaggaggaggtgcttgagcaggatcagttgtcaacctttgttcctgttccacggatctattttttatgtacaacactgatttattttcactgcagagatagctccaatgaagatttaagggcagtaatttatgctttggactggtctatcataaatacaattatcatttctctagtggaagttctttttcttaaagagccaacagaggtcagaagatcctcaaagcaattgaaaacttgctgattgaggagtgcggcaatttcttccatacacaaatctctactcagctcgtgctgtgtacaattacatcttgatgtcaaatttgcatgattattttattttgttgatcagtgaatttcatatttcagtgatagtaacaatgcagttgtttggaatatgatgtattggatagtcttgaatttgcaaggggaagtgcagaatcaatactgggctctgttagagctgcaatggggcaatctgaacggttcccgtgaagtatgttgcaaatgaagattgtgggaaggaattttaccaaggtataatttttattaatcacagtttgacatatcaatgatctcatttgttgtcaatgccaatattccatagttgttttccttaggtttcaataacttaggcacatttataggctaaaatgatgtgatggccaagtgtaattaacatataatctcttatcatttatgattgttttctgttgatctgcatatcttaaaccgcttatttatcttatcagtttctgaggacacattttctttgcacatgaagctataattgatcataacctccagaatgaagacatcctagttgcctccaagttgtccatgatggtttctaatccaattgtacaggagactatctcaagttctatgatgctatatccaaggcctatccagacattcaaatgatttcaaactttgatggatcatctaggccacttgaccatcctgctgatttgtatgatttccatgta
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| CDS seq | atggcgggcctggcgacGAgagagccgaggcgaatcagcgggggacagaggaggtggaaaaagccagttgattcagcaagaactcgtctggagggcagaacaagggatcataaactggacaagctgatgattcagctgaagaacctcaggctggctttggatttacatgagttgatatctcagcagaggaacaaatatgcatctctccaactcctctccaggtggagacatgaggtcggcttgaacattgagataggcgctttcctcaagaaatatccccacattttcgacatttatgtgcacccaatcaaaagaaatgaatgctgtaaggtcaccccaaaaatgtctgaattgattgcacaagaagatgcttccatcagggaaaatgagcctgctattgctaagcggctcaagaagcttctcacgctatcgaaggatggaactctgaatatgcatgcattgtggctcgtaagaagagaacttggcctgcctgatgactataggtgctctatactaccaaaccatcagtctgatttttctctaagttcccctgatactctgacattgatcactagggatgaaaatcttgctgtagctgatgttgaagaatggagagcaaaggaatatacagaaaaatggttagctgaatctgagacaaaatatgcttttcctattaactttccaaccggctttaagatcgagaaaggttttaggggaaagcttgggaattggcagaggcttccctacactaaggcttatgagaagaatgaattgcatccaatccgcaatatcgagcggctcgagaaacgtattgttggcattcttcatgagcttttaagcttgacaatagaaaagatgataccacttgagagactgtcacacttcagaaaaccttttgaaatggaggtaaacctgcgggaacttattcttaagcaccctggcattttctacatctcaaccaaaggaagcacacaaactgtccttcttagagagagttacagtaagggatgcctggttcatcctaaccctgtctacaattggaagttctttttcttaaagagccaacagagtgatagtaacaatgcagttgtttggaatatgatgtattggatagtcttgaatttgcaaggggaagtgcagaatcaatactgggctctgttagagctgcaatggggcaatctgaacggttcccgtgaagtatgttgcaaatga
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| Protein seq | MAGLATREPRRISGGQRRWKKPVDSARTRLEGRTRDHKLDKLMIQLKNLRLALDLHELISQQRNKYASLQLLSRWRHEVGLNIEIGAFLKKYPHIFDIYVHPIKRNECCKVTPKMSELIAQEDASIRENEPAIAKRLKKLLTLSKDGTLNMHALWLVRRELGLPDDYRCSILPNHQSDFSLSSPDTLTLITRDENLAVADVEEWRAKEYTEKWLAESETKYAFPINFPTGFKIEKGFRGKLGNWQRLPYTKAYEKNELHPIRNIERLEKRIVGILHELLSLTIEKMIPLERLSHFRKPFEMEVNLRELILKHPGIFYISTKGSTQTVLLRESYSKGCLVHPNPVYNWKFFFLKSQQSDSNNAVVWNMMYWIVLNLQGEVQNQYWALLELQWGNLNGSREVCCK |
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| Function | Protein ROOT PRIMORDIUM DEFECTIVE 1 [UniProtKB/Swiss-Prot:Q689D6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0016020 | OsLaMu_02g0016020.01 | Chr02 | 16449335 | 16452389 | + | NAM | ||
| CDS seq | atggcgggcctggcgacGAgagagccgaggcgaatcagcgggggacagaggaggtggaaaaagccagttgattcagcaagaactcgtctggagggcagaacaagggatcataaactggacaagctgatgattcagctgaagaacctcaggctggctttggatttacatgagttgatatctcagcagaggaacaaatatgcatctctccaactcctctccaggtggagacatgaggtcggcttgaacattgagataggcgctttcctcaagaaatatccccacattttcgacatttatgtgcacccaatcaaaagaaatgaatgctgtaaggtcaccccaaaaatgtctgaattgattgcacaagaagatgcttccatcagggaaaatgagcctgctattgctaagcggctcaagaagcttctcacgctatcgaaggatggaactctgaatatgcatgcattgtggctcgtaagaagagaacttggcctgcctgatgactataggtgctctatactaccaaaccatcagtctgatttttctctaagttcccctgatactctgacattgatcactagggatgaaaatcttgctgtagctgatgttgaagaatggagagcaaaggaatatacagaaaaatggttagctgaatctgagacaaaatatgcttttcctattaactttccaaccggctttaagatcgagaaaggttttaggggaaagcttgggaattggcagaggcttccctacactaaggcttatgagaagaatgaattgcatccaatccgcaatatcgagcggctcgagaaacgtattgttggcattcttcatgagcttttaagcttgacaatagaaaagatgataccacttgagagactgtcacacttcagaaaaccttttgaaatggaggtaaacctgcgggaacttattcttaagcaccctggcattttctacatctcaaccaaaggaagcacacaaactgtccttcttagagagagttacagtaagggatgcctggttcatcctaaccctgtctacaattggaagttctttttcttaaagagccaacagagtgatagtaacaatgcagttgtttggaatatgatgtattggatagtcttgaatttgcaaggggaagtgcagaatcaatactgggctctgttagagctgcaatggggcaatctgaacggttcccgtgaagtatgttgcaaatga
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| Protein seq | MAGLATREPRRISGGQRRWKKPVDSARTRLEGRTRDHKLDKLMIQLKNLRLALDLHELISQQRNKYASLQLLSRWRHEVGLNIEIGAFLKKYPHIFDIYVHPIKRNECCKVTPKMSELIAQEDASIRENEPAIAKRLKKLLTLSKDGTLNMHALWLVRRELGLPDDYRCSILPNHQSDFSLSSPDTLTLITRDENLAVADVEEWRAKEYTEKWLAESETKYAFPINFPTGFKIEKGFRGKLGNWQRLPYTKAYEKNELHPIRNIERLEKRIVGILHELLSLTIEKMIPLERLSHFRKPFEMEVNLRELILKHPGIFYISTKGSTQTVLLRESYSKGCLVHPNPVYNWKFFFLKSQQSDSNNAVVWNMMYWIVLNLQGEVQNQYWALLELQWGNLNGSREVCCK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.160090 | 1.880230 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0464400 | RBH | 1.620221 | 1.679553 | 2.509477 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g26550 | RBH | 1.088905 | 1.114742 | 0.658477 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0464400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0016270 | RBH | 0.285397 | 5.586659 | 4.438646 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0016400 | RBH | 0.234426 | 0.443445 | 1.894085 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0016300 | RBH | 1.388648 | 4.987151 | 9.271630 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016200 | RBH | 0.218091 | 0.107640 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0016090 | RBH | 3.941531 | 10.264398 | 7.076466 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0261300 | RBH | 3.8358885 | 7.144708 | 9.9255575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015860 | RBH | 0.363860 | 0.108744 | 0.984717 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0281400 | RBH | 4.1781525 | 10.958543 | 15.011244 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0016420 | RBH | 0.213845 | 0.376383 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015980 | RBH | 0.430762 | 4.976780 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0016500 | RBH | 5.773880 | 4.280850 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0016290 | RBH | 0.684340 | 0.401052 | 1.005509 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G016460 | RBH | 0.857313 | 1.805011 | 1.259707 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0016190 | RBH | 0.355117 | 9.385093 | 5.226273 |
