Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0014140 | OGI:02034870 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:12599168-12602743 | ||||||||
| Gene Symbol | OsbHLH139, bHLH139, OsSACL3B, SACL3B | ||||||||||
| DNA seq | agcaggaacaactaatagttaatgagcatcattaggacaacttttaccaagcatgcatcaagttgacattgctaaaccccccttttcccgtgtgggattcgagcactagctagctagaacaaaagggggcgagagacggccgggatgggatcgatgcttgctcgatcacttctcgccaaaaaggcaggctcccgctagtgccaaccccaacatgaacatgctgtgcattacacaagcaagcaaagcatgcacacaaacatatacccacgggagacggggtggcaacgtgccatcgccatcatgagctagcagcacacccacacatcgtcacaatgatggcatattgagagtgtaagcaccagcagtgcatccatccatgcatgcatggatcatggcatcatgctagttcatggatcgatggatggagagaccagatggaacaagacaaaggcagaaacagtaaccagtataactgaacacgtcaagctaacgaaggaggggatcatcaatggataattcatccagcaggggaagggggggccacattgcaggggcagaaaggaaaaaagcaagcaaggcaacaaatgaagaggggtagtagcagacaaagccaaagcatgcaaatatgcgattgcaatgctgcccttctccctctcctctcctctgcctaactagaactccataatccatatccatcatctctccactactactatagtacacccaaagcaaatgagcactagctagtactagtagtacattgatgatgatcactgcctctcctctgccccctcccatgctccctctctcatcatggacggagcataaagcccgtagccaaaagtagagcgcacaaaaagagtttggccagatcatggcactgcgaaaagggcatcaactagctatggctagcttggcgatgccaatgccgacccaaggcatggagaaatggaggatgatggagtagggtacatgtcgtgcatgcagatgcagtgtactgtcagtagtagcactcgatcgctgctgctgactgctggtgctgttgctgccgctgcagctgcctctctcttttttttttgtttgtttgtttcctccgttctgccggtgttggagatgatgatgatcagttgtcggagccgcgcacgccaagcttcttgacctcgaccttgagagacttgaggtaccggacggcctcgtcgagcacggccggcgtgtccatctggttgccgccggggataatgcccttgagcgtccgcaccatcttcttcatgcgctccttcttgcgcccgggcctcgcctgcccgccgccgtagctggacgagcacgtcgagtccggggagctgccgtcccggtaccccggggtgcgccccgtgctcaccacgtcgtcctcgtcgccgtcctccgagctcagcagcgcgtcgatctcgtccgtgtcctccttctgccgcaccgagcagctgtcgtcgtcgtcgtagccgacgctgtccctgtacgcgcccttggcggcgtcgtgcgcgccgccgccgccgtacacgttgttgtcgtacgccgacgacccgccgccgaacttgtgcgccagcgaggggtggaacatgacccggctcttggtgcacgtctggtcgaagatgacgtagttcttggggcacgtggccgacggctggaactccagctcgttcatcggcgccgggaagtcgtgcgtcctcctcccgaccatcgggtcctcgtacgccgccgccgccgccccagccgacgggtagccgccgccgccgccggagtagtacccaccggcgtcgtagccatacccgcctccgtagccgtagccgccgccgtagccgtacccctgcggcggcgagtccctcccgccgtagtacccgtggtctccctgcatcttcttctgctcttaacttccaaactctgtttgtctcctctgttttttttcttgtgagagaagctgcgcagctagctctctcgtcgggtgaagaagggaggaggattatgtactggtcaacctacgtcacgggcttgagaaggtgacggaagtactcggcctgcacgatcacaaatccaaaacaacacatcagaaatataccccagatcatggcatcatcagaataggcaaaatggcaacgcatctcggttcctgtagtggtcaagcaactggtgcgagattaaagcgactttttgtttgcaagtaccaccaactttggcctaccccacacacacattgcatacaacatactgttgtccacacaaggtagggcatgcccggaaagatgtgcacagaactaacggtttcgtgagagtgcaaacaggggacaaggcaacttgcaattcatagtggtgcctactactgctgctgctgctctgctccaatattttaagtgtcccaagccaacccgagctgctattgctgtgaacacaacagggagagaaggggggaaagcggcctaattttagtagcgttttttgggaaaagaagggcacgccgcgatccggactgagcgcgtgcaagcaaaatgcactagctagctaggcaaagtcgcgcgtgatcgggcgcaatgtttgtttggcatgccgtgcaatctactccaggagtgggcatgcagtggcacaacaccataccaagttaacaacaacatgacacgcaacaagtcttcaagaggttcagcacaacagagaacttaattaattctgtttagcagtatactcagtgtgtccatggaaatgtggctgagtcagttaatatatcacaaatagtaagaggtcataagatatggttggttgacgcgagcttgacagctgcacaagcaatatcaccttgtgcgacacttgacttacggttgttgtcatcagaagactaacaagctaacaggacgtgccactttaacactgacatgccaaacgttttcttctttttgccccccaacgcatatgcatatgcacgcactgcgattaactctctcaattaagataggacttagcgtcAaaaaaaaaattaagacaggacttattaaacaccacaaaaacagagacgttaacgagagtagaactactctagcagagtagggaaaattgagggggaaaaaaatcaaggagctgagatagagaggcaatacatgcgatgatcgagcacctggcaaaccttggtcagcgtgtggtagtacgcgatggcgccacttctcatcaccgcgtcggcggcgctcgtctcgctgctactcctcctgctcccttggaaaccaatgcacattctcagtcagtcaccgccggccgatcgacggatcgagtagctttagcttgctctcacctgtaaattgaaacacgatcgatcgttttagctattcattgcactaatggcgcgcgtcaaatgtctaacaagagctgcatgcagccatgggtgatgggaagaaaagagcgctactcacacgatgacgcggaagaagacgaccaaCcggacgaggaagcgcacccacggcatggcctgtgtctcgattatcagtggagattgagatggacgggaagagttggctgtgcggggtgagaagccaaagcgagaggagctaaggtttggtttgttgc
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| CDS seq | atgcagggagaccacgggtactacggcgggagggactcgccgccgcaggggtacggctacggcggcggctacggctacggaggcgggtatggctacgacgccggtgggtactactccggcggcggcggcggctacccgtcggctggggcggcggcggcggcgtacgaggacccgatggtcgggaggaggacgcacgacttcccggcgccgatgaacgagctggagttccagccgtcggccacgtgccccaagaactacgtcatcttcgaccagacgtgcaccaagagccgggtcatgttccacccctcgctggcgcacaagttcggcggcgggtcgtcggcgtacgacaacaacgtgtacggcggcggcggcgcgcacgacgccgccaagggcgcgtacagggacagcgtcggctacgacgacgacgacagctgctcggtgcggcagaaggaggacacggacgagatcgacgcgctgctgagctcggaggacggcgacgaggacgacgtggtgagcacggggcgcaccccggggtaccgggacggcagctccccggactcgacgtgctcgtccagctacggcggcgggcaggcgaggcccgggcgcaagaaggagcgcatgaagaagatggtgcggacgctcaagggcattatccccggcggcaaccagatggacacgccggccgtgctcgacgaggccgtccggtacctcaagtctctcaaggtcgaggtcaagaagcttggcgtgcgcggctccgacaactga
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| Protein seq | MQGDHGYYGGRDSPPQGYGYGGGYGYGGGYGYDAGGYYSGGGGGYPSAGAAAAAYEDPMVGRRTHDFPAPMNELEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGGGSSAYDNNVYGGGGAHDAAKGAYRDSVGYDDDDSCSVRQKEDTDEIDALLSSEDGDEDDVVSTGRTPGYRDGSSPDSTCSSSYGGGQARPGRKKERMKKMVRTLKGIIPGGNQMDTPAVLDEAVRYLKSLKVEVKKLGVRGSDN |
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| Function | Transcription factor bHLH144 [UniProtKB/Swiss-Prot:Q9ASX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0014140 | OsLaMu_02g0014140.01 | Chr02 | 12599168 | 12602743 | - | NAM | ||
| CDS seq | atgcagggagaccacgggtactacggcgggagggactcgccgccgcaggggtacggctacggcggcggctacggctacggaggcgggtatggctacgacgccggtgggtactactccggcggcggcggcggctacccgtcggctggggcggcggcggcggcgtacgaggacccgatggtcgggaggaggacgcacgacttcccggcgccgatgaacgagctggagttccagccgtcggccacgtgccccaagaactacgtcatcttcgaccagacgtgcaccaagagccgggtcatgttccacccctcgctggcgcacaagttcggcggcgggtcgtcggcgtacgacaacaacgtgtacggcggcggcggcgcgcacgacgccgccaagggcgcgtacagggacagcgtcggctacgacgacgacgacagctgctcggtgcggcagaaggaggacacggacgagatcgacgcgctgctgagctcggaggacggcgacgaggacgacgtggtgagcacggggcgcaccccggggtaccgggacggcagctccccggactcgacgtgctcgtccagctacggcggcgggcaggcgaggcccgggcgcaagaaggagcgcatgaagaagatggtgcggacgctcaagggcattatccccggcggcaaccagatggacacgccggccgtgctcgacgaggccgtccggtacctcaagtctctcaaggtcgaggtcaagaagcttggcgtgcgcggctccgacaactga
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| Protein seq | MQGDHGYYGGRDSPPQGYGYGGGYGYGGGYGYDAGGYYSGGGGGYPSAGAAAAAYEDPMVGRRTHDFPAPMNELEFQPSATCPKNYVIFDQTCTKSRVMFHPSLAHKFGGGSSAYDNNVYGGGGAHDAAKGAYRDSVGYDDDDSCSVRQKEDTDEIDALLSSEDGDEDDVVSTGRTPGYRDGSSPDSTCSSSYGGGQARPGRKKERMKKMVRTLKGIIPGGNQMDTPAVLDEAVRYLKSLKVEVKKLGVRGSDN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.049754 | 2.329672 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0315600 | RBH | 0.0 | 0.088472 | 0.211552 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g21090 | RBH | 0.0 | 0.059379 | 0.054343 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0315600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0014250 | RBH | 0.248334 | 2.789915 | 2.260011 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0014430 | RBH | 0.0 | 1.136031 | 0.046952 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0014260 | RBH | 0.000000 | 5.456003 | 1.550041 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0014170 | RBH | 0.0 | 0.051319 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0014070 | RBH | 0.0 | 1.455160 | 1.876061 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0198800 | RBH | 1.3649795 | 3.5655605 | 2.82985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013880 | RBH | 0.0 | 0.000000 | 0.122755 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0210300 | RBH | 1.476639 | 1.9385395 | 11.574135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0014430 | RBH | 0.0 | 0.097207 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013980 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0014520 | RBH | 0.0 | 8.609225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0014330 | RBH | 0.0 | 0.347999 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G014440 | RBH | 0.0 | 1.162650 | 1.261187 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0014190 | RBH | 0.400714 | 6.152976 | 0.646476 |
