Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0010640 | OGI:02024560 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:8665734-8669211 | ||||||||
| Gene Symbol | GELP33, OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c, DR, BS1 | ||||||||||
| DNA seq | actcctccccctcccaatcccaaatcgcaattactccccaagccgcgagagagcccgagagtaaactaatcgccatccgccaccgcgcagccgcggcagctagctcgcgagaagaaaacgccacgcgacccgagagcGAgagagagagagagagagagagagctaagccgccgtgcgccacgccaccaccaccaacccatcccaatctctctctctctctctctctcctcgtgctcctagctacaagaagaaccccctcacccccaccccggacacctacctagccgctacccctctctcttcctcttcttcttcttcttcttcttccctcttcttgtggtggtgggtttgacccaagaacggaggagggatagggcgggcggcgatgggggcagttcgggggattttggtcgtggcggtggttcttgcggtggcggcgattcttgctggggcggcggaggggaaggtgaacgggaaggcgaaggggaagtacagggctctgttcaacttcggggactcgctggccgacgccggcaacctcctcgccaacggcgtcgacttccgcctcgccaccgcccagctcccctacggccagaccttccccggccaccccaccggccgctgctccgacggccgcctcgtcgtcgaccacctcggtgcgccccttggtttctccgctagattggatttcgatgtctgcctgctttgtgttgctgatggtttggttttttggtttggatcgcagccgacgagttcggcctgccgctgctgccgccgtccaagctcaagaactccagcttcgctcacggcgccaacttcgccatcaccggcgccaccgcgctcgacaccccctacttcgaggccaaggggctcggcgccgtcgtctggaactccggcgccctcctcacccaaatccagtggttccgcgatctcaagcccttcttctgcaactccaccaagggtataatcataaattgcatatgcccaaatccccaccttaccttgtagctacctcgcctcactgaatttggggatttgtttttgtttttatctccagagagaactggattggggaattgtatctgattgttttgatgtttttgcagcggaatgcgatgaattctatgcgaattcgctcttcgtcgtcggcgagtttggtggcaacgactacaatgcgccgctgtttgcggggaagggccttgaggaggcctacaagttcatgccggatgtcatccaggctatctccgatggcatcgaggtagaaattcagtagcttcgttgtgtcgcctatttgttagtggtcatgtggagaatgtgatttcaattatacaactgttcgtgtttggtgcagcaattgattgctgagggcgcaagggagctgattgtacccggtgtgatgcccactggatgcttccctgtctacttgaacatgctcgatgagccggccgatgggtatggcccccagagcggctgcgtccgtcgatacaacacattctcatgggtgcacaatgcacatctcaagcgcatgcttgagaagctccggcccaagcaccccaatgtgaggatcatatatggcgattactacacgcctgttatccagttcatgcttcagcccgagaagtttggtaagttcttgagctctttgatagttagctagctcaggaagcatcagttcgttcttatcctttatttcacatcggtactaaattggcttttctagcaaaataactgttttttagctcttgctgctctcatttacttgaacagatcaagtcaactgatacctagagtcaacttttcctcctgtcacccttgaaagacacaatatattatttttagatagttcagatctgggtagaggtgccttatctctctagtagcacactgcaatatttcaaattacagtaatgatggatcacaatttgtgatttgaaaccaattagagtagctccatctatgttcagagtaaattggaagcaaagttactaatcccatcttcattagaatcttttacactagtctgtaaagtagtatggctatcagttctattagtactctaccactctttgttcaaaccttgtcctgttgttaattgtcttcttgagagagggggccatcctgaactataatgagattccacccatgataggtaatgtggggctaacaattaggattgtctgatggtctgattgttatacaagctacatacacaggctgcccaacttgtttctccaggcaaccatgtaaaaaagctttgaaccttagccatactgtcacctactttaaaattatggttgtggcagctctgctcttgtttgatatgatctagttcagtttcaaaactgccacattttgattgtctccatacatattttgccaccgattcttttaaaacctcgcacatgggttcgagtgggtgtatattatcctcgtgtgtttaattcgaatagcagtggcttgaaaacaccacaaataaataaaatgacacattggcacgttttccctacctaacctttttacctttttccaaccatcgtgtgtatcacaaatttcaacatgtccttgttgcggggagtacagacatgtaggaattgctctgttagctgagccatcctttttggtgatccacttctgttatctaatgcttgcttaccttgctggcaatgaccttttttatgctttgtagttagtactttttaattagagggagcatcagcaggtagagttatgaaatcttctgcatagtttaatggccaagttgggcatcacggttcaatggccttgtcatctctagatcacatccgctagcatttctctttcattgtgtgtggtagcaacaaacacatctttggcccatttaattctgctaatagagactgtttctgtctcaactggtgaagaaaaaggattcagatgcattattgttgattAaaaattgaaaacatctaacgttcttgccttttcaattcaggattttacaagcagctacctagggcatgctgcGgggctcctgggtccgttgcgaaggccgcttacaacttcaatgtcacagccaaatgtggtgaggctggtgcaaccgcgtgtgatgatccatcaacccattggagctgggatggcattcacctgacagaggcggcttacggtcacattgccagaggttgggtatatggtcctttcgctgaccaaccgatcttccaatcttcatgagaaagtcacttcttccgttgtaattgtagaggtgtatcacgatagtgcactgaaatggagcagggaaagtagttcttccatatggttccaaggttgcatacatgtatattttcattctattacattcattgcagtcgggtacaaaggtggaatagggctgtcaaaagcttgattttgtttatttgtcaggcgacataactatgaaaatgtaacagacacatgattgtgtaaattgcctccgggaaatatgatacaaattgtctttttgagt
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| CDS seq | atgggggcagttcgggggattttggtcgtggcggtggttcttgcggtggcggcgattcttgctggggcggcggaggggaaggtgaacgggaaggcgaaggggaagtacagggctctgttcaacttcggggactcgctggccgacgccggcaacctcctcgccaacggcgtcgacttccgcctcgccaccgcccagctcccctacggccagaccttccccggccaccccaccggccgctgctccgacggccgcctcgtcgtcgaccacctcgccgacgagttcggcctgccgctgctgccgccgtccaagctcaagaactccagcttcgctcacggcgccaacttcgccatcaccggcgccaccgcgctcgacaccccctacttcgaggccaaggggctcggcgccgtcgtctggaactccggcgccctcctcacccaaatccagtggttccgcgatctcaagcccttcttctgcaactccaccaaggcggaatgcgatgaattctatgcgaattcgctcttcgtcgtcggcgagtttggtggcaacgactacaatgcgccgctgtttgcggggaagggccttgaggaggcctacaagttcatgccggatgtcatccaggctatctccgatggcatcgagcaattgattgctgagggcgcaagggagctgattgtacccggtgtgatgcccactggatgcttccctgtctacttgaacatgctcgatgagccggccgatgggtatggcccccagagcggctgcgtccgtcgatacaacacattctcatgggtgcacaatgcacatctcaagcgcatgcttgagaagctccggcccaagcaccccaatgtgaggatcatatatggcgattactacacgcctgttatccagttcatgcttcagcccgagaagtttggattttacaagcagctacctagggcatgctgcGgggctcctgggtccgttgcgaaggccgcttacaacttcaatgtcacagccaaatgtggtgaggctggtgcaaccgcgtgtgatgatccatcaacccattggagctgggatggcattcacctgacagaggcggcttacggtcacattgccagaggttgggtatatggtcctttcgctgaccaaccgatcttccaatcttcatga
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| Protein seq | MGAVRGILVVAVVLAVAAILAGAAEGKVNGKAKGKYRALFNFGDSLADAGNLLANGVDFRLATAQLPYGQTFPGHPTGRCSDGRLVVDHLADEFGLPLLPPSKLKNSSFAHGANFAITGATALDTPYFEAKGLGAVVWNSGALLTQIQWFRDLKPFFCNSTKAECDEFYANSLFVVGEFGGNDYNAPLFAGKGLEEAYKFMPDVIQAISDGIEQLIAEGARELIVPGVMPTGCFPVYLNMLDEPADGYGPQSGCVRRYNTFSWVHNAHLKRMLEKLRPKHPNVRIIYGDYYTPVIQFMLQPEKFGFYKQLPRACCGAPGSVAKAAYNFNVTAKCGEAGATACDDPSTHWSWDGIHLTEAAYGHIARGWVYGPFADQPIFQSS |
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| Function | GDSL esterase/lipase At5g45910 [UniProtKB/Swiss-Prot:Q9FJ45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0010640 | OsLaMu_02g0010640.01 | Chr02 | 8665734 | 8669211 | + | NAM | ||
| CDS seq | atgggggcagttcgggggattttggtcgtggcggtggttcttgcggtggcggcgattcttgctggggcggcggaggggaaggtgaacgggaaggcgaaggggaagtacagggctctgttcaacttcggggactcgctggccgacgccggcaacctcctcgccaacggcgtcgacttccgcctcgccaccgcccagctcccctacggccagaccttccccggccaccccaccggccgctgctccgacggccgcctcgtcgtcgaccacctcgccgacgagttcggcctgccgctgctgccgccgtccaagctcaagaactccagcttcgctcacggcgccaacttcgccatcaccggcgccaccgcgctcgacaccccctacttcgaggccaaggggctcggcgccgtcgtctggaactccggcgccctcctcacccaaatccagtggttccgcgatctcaagcccttcttctgcaactccaccaaggcggaatgcgatgaattctatgcgaattcgctcttcgtcgtcggcgagtttggtggcaacgactacaatgcgccgctgtttgcggggaagggccttgaggaggcctacaagttcatgccggatgtcatccaggctatctccgatggcatcgagcaattgattgctgagggcgcaagggagctgattgtacccggtgtgatgcccactggatgcttccctgtctacttgaacatgctcgatgagccggccgatgggtatggcccccagagcggctgcgtccgtcgatacaacacattctcatgggtgcacaatgcacatctcaagcgcatgcttgagaagctccggcccaagcaccccaatgtgaggatcatatatggcgattactacacgcctgttatccagttcatgcttcagcccgagaagtttggattttacaagcagctacctagggcatgctgcGgggctcctgggtccgttgcgaaggccgcttacaacttcaatgtcacagccaaatgtggtgaggctggtgcaaccgcgtgtgatgatccatcaacccattggagctgggatggcattcacctgacagaggcggcttacggtcacattgccagaggttgggtatatggtcctttcgctgaccaaccgatcttccaatcttcatga
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| Protein seq | MGAVRGILVVAVVLAVAAILAGAAEGKVNGKAKGKYRALFNFGDSLADAGNLLANGVDFRLATAQLPYGQTFPGHPTGRCSDGRLVVDHLADEFGLPLLPPSKLKNSSFAHGANFAITGATALDTPYFEAKGLGAVVWNSGALLTQIQWFRDLKPFFCNSTKAECDEFYANSLFVVGEFGGNDYNAPLFAGKGLEEAYKFMPDVIQAISDGIEQLIAEGARELIVPGVMPTGCFPVYLNMLDEPADGYGPQSGCVRRYNTFSWVHNAHLKRMLEKLRPKHPNVRIIYGDYYTPVIQFMLQPEKFGFYKQLPRACCGAPGSVAKAAYNFNVTAKCGEAGATACDDPSTHWSWDGIHLTEAAYGHIARGWVYGPFADQPIFQSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.641761 | 38.465282 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0250400 | RBH | 4.374582 | 7.991193 | 8.719213 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15230 | RBH | 2.666696 | 4.858104 | 1.943192 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0250400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010800 | RBH | 0.676900 | 71.220535 | 47.384136 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010920 | RBH | 0.365224 | 20.523764 | 4.829710 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010760 | RBH | 3.006567 | 81.144157 | 22.816162 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010600 | RBH | 0.161763 | 2.923672 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010720 | RBH | 9.555503 | 112.509209 | 62.888107 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0140900 | RBH | 29.296276 | 59.046808 | 12.9146525 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010470 | RBH | 0.613119 | 5.599600 | 1.947980 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0147800 | RBH | 44.5523735 | 48.984837 | 9.8611755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011020 | RBH | 0.437600 | 0.623303 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010620 | RBH | 1.664956 | 43.787899 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0011020 | RBH | 11.137382 | 93.139404 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010980 | RBH | 1.566216 | 6.286821 | 5.195390 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018120 | RBH | 1.135098 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010880 | RBH | 0.000000 | 19.023737 | 15.139428 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010680 | RBH | 2.088876 | 58.801044 | 27.025255 |
