Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0006160 | OGI:09005370 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:4401911-4403768 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagtgtgcaatcatagaataacttacaccaagtttgtttgcttccttctccgatgggtcaatgttaaatttgcatgatgttgcatcaaaaccatagccactttttcctaaggctgcacagatccaactccatttttccttgcatagcctgaaatgccgatggacctggcttctgttgactctaagtccaagcttgtcattcaaagcagtagcacactgctggtggtgttgtttcctccacttgaaggtggtaggtttgtccttgcggagcgatatataccactcaagcatgaactgagtggcatcatcactccaagtgatatacttttcacgagagccaccttccttgctattatcttcagtacgatttcccatactgcatacatcataggagaattgtaagtaaaacacttcatatgaacaatggtagtcagttaatacaaaaaacaaagattgtaagcaatatacgttggtaactcattcgctggtcataacatcatggacatctatgttgtttctatcattccacatctgattggcaatatcgtcacgcttggctgcccactcacgtacatcagcccctttgtcagtgacacggttactactccttggtaggcgagcataccacgtatcctcatcggagacaaattcatcatgtccatcgtccaatatccaattatgaagggcacaacaagcgataaccaccattgcttgggctttcaagggtatgaatggcttattcataagaatcttgaagcggttcttaagagcaccaaaagctcgttcaattgtagttcgaagtgaagaatgacgatagttgaatagctcttttgggcattttggaccttgagggccacgaaactcttttaggtgatatcgaacacgacgatatggcggcaatatacccggcctagcagcatatccagcatcagccaaaaaatatttccctacaaccatcaatcatgtcatatatgagcctaatgttatcttcttacaacaaggctaattacgattctttcaaaatgtttaattaccttctggtattttaagaccatttgggcgcgacaatgcatcttgcaagacaagagaatcatgagctgacccctcccaacctgataggatatatgtgaacctaaggtcaaagtcgacagcagccaatacgttctgtgtggggtatgacttgcggcctctaaacctatccaccttcttggctggcacacttgccctgatgtgtgtgccgtctagtgcccagccctaagtgcagacaaaataaaaacatccgagtgaaataaacaaaagttaatggaatatgaattattgtctcttggtatttagagttacctcaaaatatggatgaatttgttgggttgctggtgatcttagtatgtgatcggtagacctgacataaatgagttctcgagctaactcacacatggcccgcaacacaatatgaaaatacctactcactgtctcaccagatcgccaaaatgagaatcctacggatgaactgaatgatgttgtccaaccttcttcagaaacattgccacttgctcctctactgaaacatgaaaggtgtcaactagtagtcccttgttcttaagacgagaacagagcctgtagaataactgacggggctcaattgttgtgtgcatatcctatctgaagtgtcgatcaacctaattaattcacttgttctccatacatccctatggatcaggggcccataccgtacccctttgcatttacttcttttaccatttttattcctcaaccagacgaggatcaaaaccagaagtatcactacagccttttgcctcaacaagaagcaatgcacatattgctgtcgattgctctccat
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| CDS seq | atggagagcaatcgacagcaatatgtgcattgcttcttgttgaggcaaaaggctgtagtgatacttctggttttgatcctcgtctggttgaggaataaaaatggtaaaagaagtaaatgcaaaggggtacgtagaggagcaagtggcaatgtttctgaagaaggttggacaacatcattcagttcatccgtaggattctcattttggcgatctggtgagacagtgagtagtatgggaaatcgtactgaagataatagcaaggaaggtggctctcgtgaaaagtatatcacttggagtgatgatgccactcagttcatgcttgagtggtatatatcgctccgcaaggacaaacctaccaccttcaagtggaggaaacaacaccaccagcagtgtgctactgctttgaatgacaagcttggacttagagtcaacagaagccaggtccatcggcatttcaggctatgcaaggaaaaatggagttggatctgtgcagccttaggaaaaagtggctatggttttgatgcaacatcatgcaaatttaacattgacccatcggagaaggaagcaaacaaacttggtgtaagttattctatgattgcacactag
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| Protein seq | MESNRQQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRRGASGNVSEEGWTTSFSSSVGFSFWRSGETVSSMGNRTEDNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGVSYSMIAH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0006160 | OsLaMu_02g0006160.01 | Chr02 | 4401911 | 4403768 | - | NAM | ||
| CDS seq | atggagagcaatcgacagcaatatgtgcattgcttcttgttgaggcaaaaggctgtagtgatacttctggttttgatcctcgtctggttgaggaataaaaatggtaaaagaagtaaatgcaaaggggtacgtagaggagcaagtggcaatgtttctgaagaaggttggacaacatcattcagttcatccgtaggattctcattttggcgatctggtgagacagtgagtagtatgggaaatcgtactgaagataatagcaaggaaggtggctctcgtgaaaagtatatcacttggagtgatgatgccactcagttcatgcttgagtggtatatatcgctccgcaaggacaaacctaccaccttcaagtggaggaaacaacaccaccagcagtgtgctactgctttgaatgacaagcttggacttagagtcaacagaagccaggtccatcggcatttcaggctatgcaaggaaaaatggagttggatctgtgcagccttaggaaaaagtggctatggttttgatgcaacatcatgcaaatttaacattgacccatcggagaaggaagcaaacaaacttggtgtaagttattctatgattgcacactag
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| Protein seq | MESNRQQYVHCFLLRQKAVVILLVLILVWLRNKNGKRSKCKGVRRGASGNVSEEGWTTSFSSSVGFSFWRSGETVSSMGNRTEDNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGVSYSMIAH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0003220 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0003160 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006180 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0227200 | SBH | 0.092203 | 0.0285485 | 0.0597605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006160 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0240300 | SBH | 0.108847 | 0.082991 | 0.31355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015560 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015130 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015640 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006390 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G015600 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
