Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0000180 | OGI:02000240 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:110763-112358 | ||||||||
| Gene Symbol | AGP, OsAGP | ||||||||||
| DNA seq | gcgcgcgcggatagatcatatctagcgtggacgatggcgaggcatcggtggtatgtgcaggcggtggcgctgctggtggtgctgaaggcggcggcagggtctgcggcgccgccgacgacgacgaggagcaggagcagcagcacggtggtggccgggatggtgttctgcgaccagtgcaaggacggcgccagaggcctcttcgactacccgctctacggttggattgcttttgcatttgcatataaagatactacaatttgattgcaataatccatgatgatcgatgatcatgggggcggcggcgtgcttgaggcttgagcaagctacctgtccgtcatctactctactgtgtgcagtgcatgctattctccttgcctacctaacctgatcaattagtactttacttcctttattattctttccttcagaaatttgtggttaatttggatatgctgtaaaatggaaggaatgcatttgtggtgggtgcaggtgcgcgggtggcgatcgagtgcggcggaggggagagcccggtgacggtgcgggagtgcaacaccaactggttcgggggattctccgtccgcatggagggcacgcccgagatgaaccgctgcacagcgcgcgtcgtccaggccaccggccactgcggcgccgccatccccaccgcccctcgcgacctcaccctcgccttccgcatgctcggcctcgccctctacaccgtccccccactcctctcccagccgctccgtcccatggacttctgcccatctccattaacatctccatctcctcccgccctcgcgctcgccccctctccgattccgactccaatcatcgcgccgccccccgtgtcctcgccggctccccctctcccgcccctctggcgccgcaggcctcgccgcctgccgcccatctggcgcccgaccccaccctcgctacccgttgacaccatgccgccgccgccgccgccaccgccaccgcagccgcagggctccgcctgcaccttcgagtacgtatctatctactagtccttccttaataatttgaacaacatatagatgattaatgaaatgaaatggatcgtcagcaagtgggcggacgttggattgcacgggtgcaactggaaggtggtgacgcccaacacgacggtggccatggcgttcggccccgccgcggcgcagaggtacggccccgacatgacgctgcgggaggcgctggacgggaggggagacatgtaccggacgctgctgcgggaggccacggcggcgctcctcaatgcctactacaaccccagtggctccggcttcctgtaccccaccaccgccagcgtcatcgaccacatcaacgccgccctcctcacccccacgctccacaagcttctcctcgagggtgcgcgcttccgccgcgccaactccgactccaacctgccctgccacctcaccccctgcaactaattactactcctgcttgcttactcgatcgctaatgcactcgtttttcattttattactcgctacgctaatgtattactagtgtctcgactcaatacttaattggtggatggattttaatactacactactactactggagtactat
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| CDS seq | atggcgaggcatcggtggtatgtgcaggcggtggcgctgctggtggtgctgaaggcggcggcagggtctgcggcgccgccgacgacgacgaggagcaggagcagcagcacggtggtggccgggatggtgttctgcgaccagtgcaaggacggcgccagaggcctcttcgactacccgctctacggtgcgcgggtggcgatcgagtgcggcggaggggagagcccggtgacggtgcgggagtgcaacaccaactggttcgggggattctccgtccgcatggagggcacgcccgagatgaaccgctgcacagcgcgcgtcgtccaggccaccggccactgcggcgccgccatccccaccgcccctcgcgacctcaccctcgccttccgcatgctcggcctcgccctctacaccgtccccccactcctctcccagccgctccgtcccatggacttctgcccatctccattaacatctccatctcctcccgccctcgcgctcgccccctctccgattccgactccaatcatcgcgccgccccccgtgtcctcgccggctccccctctcccgcccctctggcgccgcaggcctcgccgcctgccgcccatctggcgcccgaccccaccctcgctacccgttgacaccatgccgccgccgccgccgccaccgccaccgcagccgcagggctccgcctgcaccttcgacaagtgggcggacgttggattgcacgggtgcaactggaaggtggtgacgcccaacacgacggtggccatggcgttcggccccgccgcggcgcagaggtacggccccgacatgacgctgcgggaggcgctggacgggaggggagacatgtaccggacgctgctgcgggaggccacggcggcgctcctcaatgcctactacaaccccagtggctccggcttcctgtaccccaccaccgccagcgtcatcgaccacatcaacgccgccctcctcacccccacgctccacaagcttctcctcgagggtgcgcgcttccgccgcgccaactccgactccaacctgccctgccacctcaccccctgcaactaa
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| Protein seq | MARHRWYVQAVALLVVLKAAAGSAAPPTTTRSRSSSTVVAGMVFCDQCKDGARGLFDYPLYGARVAIECGGGESPVTVRECNTNWFGGFSVRMEGTPEMNRCTARVVQATGHCGAAIPTAPRDLTLAFRMLGLALYTVPPLLSQPLRPMDFCPSPLTSPSPPALALAPSPIPTPIIAPPPVSSPAPPLPPLWRRRPRRLPPIWRPTPPSLPVDTMPPPPPPPPPQPQGSACTFDKWADVGLHGCNWKVVTPNTTVAMAFGPAAAQRYGPDMTLREALDGRGDMYRTLLREATAALLNAYYNPSGSGFLYPTTASVIDHINAALLTPTLHKLLLEGARFRRANSDSNLPCHLTPCN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0000180 | OsLaMu_02g0000180.01 | Chr02 | 110763 | 112358 | + | NAM | ||
| CDS seq | atggcgaggcatcggtggtatgtgcaggcggtggcgctgctggtggtgctgaaggcggcggcagggtctgcggcgccgccgacgacgacgaggagcaggagcagcagcacggtggtggccgggatggtgttctgcgaccagtgcaaggacggcgccagaggcctcttcgactacccgctctacggtgcgcgggtggcgatcgagtgcggcggaggggagagcccggtgacggtgcgggagtgcaacaccaactggttcgggggattctccgtccgcatggagggcacgcccgagatgaaccgctgcacagcgcgcgtcgtccaggccaccggccactgcggcgccgccatccccaccgcccctcgcgacctcaccctcgccttccgcatgctcggcctcgccctctacaccgtccccccactcctctcccagccgctccgtcccatggacttctgcccatctccattaacatctccatctcctcccgccctcgcgctcgccccctctccgattccgactccaatcatcgcgccgccccccgtgtcctcgccggctccccctctcccgcccctctggcgccgcaggcctcgccgcctgccgcccatctggcgcccgaccccaccctcgctacccgttgacaccatgccgccgccgccgccgccaccgccaccgcagccgcagggctccgcctgcaccttcgacaagtgggcggacgttggattgcacgggtgcaactggaaggtggtgacgcccaacacgacggtggccatggcgttcggccccgccgcggcgcagaggtacggccccgacatgacgctgcgggaggcgctggacgggaggggagacatgtaccggacgctgctgcgggaggccacggcggcgctcctcaatgcctactacaaccccagtggctccggcttcctgtaccccaccaccgccagcgtcatcgaccacatcaacgccgccctcctcacccccacgctccacaagcttctcctcgagggtgcgcgcttccgccgcgccaactccgactccaacctgccctgccacctcaccccctgcaactaa
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| Protein seq | MARHRWYVQAVALLVVLKAAAGSAAPPTTTRSRSSSTVVAGMVFCDQCKDGARGLFDYPLYGARVAIECGGGESPVTVRECNTNWFGGFSVRMEGTPEMNRCTARVVQATGHCGAAIPTAPRDLTLAFRMLGLALYTVPPLLSQPLRPMDFCPSPLTSPSPPALALAPSPIPTPIIAPPPVSSPAPPLPPLWRRRPRRLPPIWRPTPPSLPVDTMPPPPPPPPPQPQGSACTFDKWADVGLHGCNWKVVTPNTTVAMAFGPAAAQRYGPDMTLREALDGRGDMYRTLLREATAALLNAYYNPSGSGFLYPTTASVIDHINAALLTPTLHKLLLEGARFRRANSDSNLPCHLTPCN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0101900 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g01190 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0101900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000180 | RBH | 0.0 | 0.0 | 2.539917 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000190 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000180 | RBH | 0.0 | 0.0 | 14.435272 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0000180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0000200 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0001700 | RBH | 0.0980955 | 0.193971 | 0.0401705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0000180 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0001900 | RBH | 0.053157 | 0.0566035 | 0.1181145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0000180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0000180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G000170 | RBH | 0.0 | 0.0 | 15.677114 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0000180 | RBH | 0.0 | 0.0 | 0.0 |
