Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0047930 | OGI:01126600 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:44745201-44749304 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttttcatttgccacttctctgttctcgtgtgttagttttcatgcacaggagagactaatgctttggattttggagaaggtgaaggaggaagagacagaggaggcaggatgctgcagcgggcggcgagcaatgcgtattcatggtggtgggcgagccacatccgcaccaagcagtccaaatggcttgatagccacctccaaggtgaccatccaatatataatcttgttcttttttatcatacatttgatttctgtgagtcagttatgtatgtacttatatgggagatttgttggtttgttcaatcctagaagttcttcaatggggaggataacgaaattattctaagccttccatccatgtgattcttgatatgaggctacagatattcttatttggagtagcacgagatctcacatctctaaattaatacgcataacctcttcacttttctgggtaaatctgcacaatcataatcagcttaggcttgttgatctgaagattaaacatgtattgcttatgggaatgggactcaggatcaatttggaccaaatcgaatgtgtaaattcctgaacctccagaactgaggtgaatgcatatgcgtacaattgatatgatgcaacctggtaaaggggacaaagaaacattatacatctagatggaaaacaatcgccttaaaaatatattaaatttactttagaatattgtcatatcaggaaactgtttctcctgtttgggagctttattcctgtgttttcagcagtttctgttgcagttatacttgctagcaaaacgaaataatgttgatgcccgtgacagaattagggcctttttgaagctatgaaaccaatgatgtatgtgaaatcttatctgctgtaaaatcatcatagcaatttgtgtttctgatcccatgaaatggtcttgtggatatatatgcagatatggaacacagagtgaagtgcatgctcttactccttggagaggaagctgattccttttcaaaaagggcagagatgtactacaaaaggcggccggaggtgatcactcaagtggaagaagtatacagggcgtacaggggtctagctgaccggtatgacatcatttcaggggaactgcacaaagcaaaccataccatcgcgacagctttccctgaccaagtgcagtatgcaatgctagaagaggaagatgacaatatccccaaggcatttaccccagtcgatccacgtaaaattcacaagtcgactgttgacggattgatgaagaagaagaaaggaggagagcagcctgcagggtcgaagaacaagaacacgacgtcagctccaatcgacaaggacaacgcacgggaggagatcagcagactacagaaagagatacttgtgatgcagaccgagaaagaattcatcaaaagctcgtacgagagtggcattgcaaagtactgggatcttgagaagcaaatcaatgaaatgcaggaacaggtgtgccatttccaagataagtttgatgaaagtgcggtgattgaggatgatgaagcccgggcactgatgacagcaacagcccttaaatcttgtgaagacaccattgtcaaactgcaggaacagcggaagacatctgctagccaggcaatgggtgagtcagaaagggtcaaggttctacgtgagaagctcaaggctgtaatggaggggcatgggaaatccttgccggattgtccagatccttgtgataaaaacgtgaggaagaatcatggctttgagatggaagaggtgcagcatatcaaactgggtgaatttgagacgcagacagtgctcgagaagatcaaggaacattttgagagggacggcagcatctcggtggcagaaatcacagaacatatcgatgaacttgttaacaaggtggttgatttggagcttatggtgtcatcgcagagctcacagatagacaggctgtgtcgagagaacagcgagttggagagttgtctgcagagtctggaggaagagaatgcgagtgacccagatgaagtaaatgagaagctgaagaagctagaagaggagctggtgagagtgcaggctcttgaaagctgcttccacaaagacgagagcacgatccgctcgaacttcagcgaagccataagcagactgagtggtatatcagagatgttgcagacttctgaacacggtgtaggaggcacattggcagtggcggatgggaaggaggaggaggaggaggaggaggaggacaatgatgcaggaggcatggatgatgttgctgaaccccaggtccagacggaggcggcatctgatgacgttgatcctgcaggtaaatcaacagctgacgttgatcctgcgggtaaatcaacagcgacgcaggaggaggaggcccaggcggtggacgttggacaggagaaagcaggaggatgttcgcgggagagagggtcgttggtacggctgcgtcacatctcctccgacgacctgggaggctgtgacgatgaagctccagctgcagtggatgacgccgatggcatgcggaagcagaagaaaggacaagaaggagaaggggttgaagaagagaagaaggttatcctggtggcggagtacagggcgctccttgaggaaaacaaggatgccaagaggaggctggctgaggtggagaagaagaaccaggagtgcatgcatgagatccagtcgctgcgtgagctgctcagcagtggctcgtccgaggcaggagcggcagcaggaggaggaggaggaggaggagacagcagcggaggcggtcggcgcggccatcggaggacgccgagctattctctgggacatcacaggaagcagagcctgtcgtccatctcgaggatgatcagaatggggtcgaccatccatgaaggcgacgagagcgagaaggtgaaagctgaggagctgcggctgccagcggtggccacatcgtcgtcgcctctggagaacaagctacgcaaggacatcgacacgctgctggaggagaacctcgagttctggatgaagttcagctcgtccctgcagcgggtgcaggagttccagcgcaagcacgacgagctgatgcagcagctgcagccggcggccaccgacggcaacagtgacaccaagcagaagcagaagcaggagcagcagctgagggcgctcaagacggagctgcaggtgtggtcggagcagaacgcgatgctgcgaggggagctgcagtgcaggttcgcggccctgtgcgacgtgcaggaggagatcacggcggcgctggaacaaggaggaggaggaggagagttcacgtcgtaccaggcggccaagttccagggcgaggtgctcaacatgcagcaggagaacaaccgggtttccgacgagctgcacgccggccaggaccacgtcaagggcctccaggcccagatcgagaagaagctgcagcacgggggcgtcaccctgcctgacgccgacggacctgcagccggagccgcaaccccgccgccgctgccattgacgcgcgtcgcgtccaagtccaaggtgcctctgcagtcgttcctgttcccggccaaggccaagaagccatcgctgctggcgcgcgtcacccctgtcctccagaagcagcagcccgatctcaggttccttgccaagctgcaaccgaggtagctcctctcttctctacttccaccattgcattccgcccttcgatttggacttctttccaactgtaacctcgctcattccttgtaacatctcaattttggacatgcataatgggtcttgatagataacgactgcaattagttatacttctgaaatgggctatacgtacaatctgtgtatatgactcatgtccgactcaactattgttttactagctcctatagagataagctgatcctaaggatcaacttcccataactattattttcctatctccatatagataagctgattgtaaggattgatggatgagaagtagttggatcagtcttataaaagacgcataactattgttttcctatctccatagagataagctgattgtaataattaatggattcctatctccatagagataagctgattgtaaggattgatgaatgaaaaatagttggatcagtgttataaaaga
More
|
||||||||||
| CDS seq | atgctgcagcgggcggcgagcaatgcgtattcatggtggtgggcgagccacatccgcaccaagcagtccaaatggcttgatagccacctccaagatatggaacacagagtgaagtgcatgctcttactccttggagaggaagctgattccttttcaaaaagggcagagatgtactacaaaaggcggccggaggtgatcactcaagtggaagaagtatacagggcgtacaggggtctagctgaccggtatgacatcatttcaggggaactgcacaaagcaaaccataccatcgcgacagctttccctgaccaagtgcagtatgcaatgctagaagaggaagatgacaatatccccaaggcatttaccccagtcgatccacgtaaaattcacaagtcgactgttgacggattgatgaagaagaagaaaggaggagagcagcctgcagggtcgaagaacaagaacacgacgtcagctccaatcgacaaggacaacgcacgggaggagatcagcagactacagaaagagatacttgtgatgcagaccgagaaagaattcatcaaaagctcgtacgagagtggcattgcaaagtactgggatcttgagaagcaaatcaatgaaatgcaggaacaggtgtgccatttccaagataagtttgatgaaagtgcggtgattgaggatgatgaagcccgggcactgatgacagcaacagcccttaaatcttgtgaagacaccattgtcaaactgcaggaacagcggaagacatctgctagccaggcaatgggtgagtcagaaagggtcaaggttctacgtgagaagctcaaggctgtaatggaggggcatgggaaatccttgccggattgtccagatccttgtgataaaaacgtgaggaagaatcatggctttgagatggaagaggtgcagcatatcaaactgggtgaatttgagacgcagacagtgctcgagaagatcaaggaacattttgagagggacggcagcatctcggtggcagaaatcacagaacatatcgatgaacttgttaacaaggtggttgatttggagcttatggtgtcatcgcagagctcacagatagacaggctgtgtcgagagaacagcgagttggagagttgtctgcagagtctggaggaagagaatgcgagtgacccagatgaagtaaatgagaagctgaagaagctagaagaggagctggtgagagtgcaggctcttgaaagctgcttccacaaagacgagagcacgatccgctcgaacttcagcgaagccataagcagactgagtggtatatcagagatgttgcagacttctgaacacggtgtaggaggcacattggcagtggcggatgggaaggaggaggaggaggaggaggaggaggacaatgatgcaggaggcatggatgatgttgctgaaccccaggtccagacggaggcggcatctgatgacgttgatcctgcaggtaaatcaacagctgacgttgatcctgcgggtaaatcaacagcgacgcaggaggaggaggcccaggcggtggacgttggacaggagaaagcaggaggatgttcgcgggagagagggtcgttggtacggctgcgtcacatctcctccgacgacctgggaggctgtgacgatgaagctccagctgcagtggatgacgccgatggcatgcggaagcagaagaaaggacaagaaggagaaggggttgaagaagagaagaaggttatcctggtggcggagtacagggcgctccttgaggaaaacaaggatgccaagaggaggctggctgaggtggagaagaagaaccaggagtgcatgcatgagatccagtcgctgcgtgagctgctcagcagtggctcgtccgaggcaggagcggcagcaggaggaggaggaggaggaggagacagcagcggaggcggtcggcgcggccatcggaggacgccgagctattctctgggacatcacaggaagcagagcctgtcgtccatctcgaggatgatcagaatggggtcgaccatccatgaaggcgacgagagcgagaaggtgaaagctgaggagctgcggctgccagcggtggccacatcgtcgtcgcctctggagaacaagctacgcaaggacatcgacacgctgctggaggagaacctcgagttctggatgaagttcagctcgtccctgcagcgggtgcaggagttccagcgcaagcacgacgagctgatgcagcagctgcagccggcggccaccgacggcaacagtgacaccaagcagaagcagaagcaggagcagcagctgagggcgctcaagacggagctgcaggtgtggtcggagcagaacgcgatgctgcgaggggagctgcagtgcaggttcgcggccctgtgcgacgtgcaggaggagatcacggcggcgctggaacaaggaggaggaggaggagagttcacgtcgtaccaggcggccaagttccagggcgaggtgctcaacatgcagcaggagaacaaccgggtttccgacgagctgcacgccggccaggaccacgtcaagggcctccaggcccagatcgagaagaagctgcagcacgggggcgtcaccctgcctgacgccgacggacctgcagccggagccgcaaccccgccgccgctgccattgacgcgcgtcgcgtccaagtccaaggtgcctctgcagtcgttcctgttcccggccaaggccaagaagccatcgctgctggcgcgcgtcacccctgtcctccagaagcagcagcccgatctcaggttccttgccaagctgcaaccgaggtag
More
|
||||||||||
| Protein seq | MLQRAASNAYSWWWASHIRTKQSKWLDSHLQDMEHRVKCMLLLLGEEADSFSKRAEMYYKRRPEVITQVEEVYRAYRGLADRYDIISGELHKANHTIATAFPDQVQYAMLEEEDDNIPKAFTPVDPRKIHKSTVDGLMKKKKGGEQPAGSKNKNTTSAPIDKDNAREEISRLQKEILVMQTEKEFIKSSYESGIAKYWDLEKQINEMQEQVCHFQDKFDESAVIEDDEARALMTATALKSCEDTIVKLQEQRKTSASQAMGESERVKVLREKLKAVMEGHGKSLPDCPDPCDKNVRKNHGFEMEEVQHIKLGEFETQTVLEKIKEHFERDGSISVAEITEHIDELVNKVVDLELMVSSQSSQIDRLCRENSELESCLQSLEEENASDPDEVNEKLKKLEEELVRVQALESCFHKDESTIRSNFSEAISRLSGISEMLQTSEHGVGGTLAVADGKEEEEEEEEDNDAGGMDDVAEPQVQTEAASDDVDPAGKSTADVDPAGKSTATQEEEAQAVDVGQEKAGGCSRERGSLVRLRHISSDDLGGCDDEAPAAVDDADGMRKQKKGQEGEGVEEEKKVILVAEYRALLEENKDAKRRLAEVEKKNQECMHEIQSLRELLSSGSSEAGAAAGGGGGGGDSSGGGRRGHRRTPSYSLGHHRKQSLSSISRMIRMGSTIHEGDESEKVKAEELRLPAVATSSSPLENKLRKDIDTLLEENLEFWMKFSSSLQRVQEFQRKHDELMQQLQPAATDGNSDTKQKQKQEQQLRALKTELQVWSEQNAMLRGELQCRFAALCDVQEEITAALEQGGGGGEFTSYQAAKFQGEVLNMQQENNRVSDELHAGQDHVKGLQAQIEKKLQHGGVTLPDADGPAAGAATPPPLPLTRVASKSKVPLQSFLFPAKAKKPSLLARVTPVLQKQQPDLRFLAKLQPR |
||||||||||
| Function | Protein NETWORKED 2A [UniProtKB/Swiss-Prot:P0DMS1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0047930 | OsLaMu_01g0047930.01 | Chr01 | 44745201 | 44749304 | + | NAM | ||
| CDS seq | atgctgcagcgggcggcgagcaatgcgtattcatggtggtgggcgagccacatccgcaccaagcagtccaaatggcttgatagccacctccaagatatggaacacagagtgaagtgcatgctcttactccttggagaggaagctgattccttttcaaaaagggcagagatgtactacaaaaggcggccggaggtgatcactcaagtggaagaagtatacagggcgtacaggggtctagctgaccggtatgacatcatttcaggggaactgcacaaagcaaaccataccatcgcgacagctttccctgaccaagtgcagtatgcaatgctagaagaggaagatgacaatatccccaaggcatttaccccagtcgatccacgtaaaattcacaagtcgactgttgacggattgatgaagaagaagaaaggaggagagcagcctgcagggtcgaagaacaagaacacgacgtcagctccaatcgacaaggacaacgcacgggaggagatcagcagactacagaaagagatacttgtgatgcagaccgagaaagaattcatcaaaagctcgtacgagagtggcattgcaaagtactgggatcttgagaagcaaatcaatgaaatgcaggaacaggtgtgccatttccaagataagtttgatgaaagtgcggtgattgaggatgatgaagcccgggcactgatgacagcaacagcccttaaatcttgtgaagacaccattgtcaaactgcaggaacagcggaagacatctgctagccaggcaatgggtgagtcagaaagggtcaaggttctacgtgagaagctcaaggctgtaatggaggggcatgggaaatccttgccggattgtccagatccttgtgataaaaacgtgaggaagaatcatggctttgagatggaagaggtgcagcatatcaaactgggtgaatttgagacgcagacagtgctcgagaagatcaaggaacattttgagagggacggcagcatctcggtggcagaaatcacagaacatatcgatgaacttgttaacaaggtggttgatttggagcttatggtgtcatcgcagagctcacagatagacaggctgtgtcgagagaacagcgagttggagagttgtctgcagagtctggaggaagagaatgcgagtgacccagatgaagtaaatgagaagctgaagaagctagaagaggagctggtgagagtgcaggctcttgaaagctgcttccacaaagacgagagcacgatccgctcgaacttcagcgaagccataagcagactgagtggtatatcagagatgttgcagacttctgaacacggtgtaggaggcacattggcagtggcggatgggaaggaggaggaggaggaggaggaggaggacaatgatgcaggaggcatggatgatgttgctgaaccccaggtccagacggaggcggcatctgatgacgttgatcctgcaggtaaatcaacagctgacgttgatcctgcgggtaaatcaacagcgacgcaggaggaggaggcccaggcggtggacgttggacaggagaaagcaggaggatgttcgcgggagagagggtcgttggtacggctgcgtcacatctcctccgacgacctgggaggctgtgacgatgaagctccagctgcagtggatgacgccgatggcatgcggaagcagaagaaaggacaagaaggagaaggggttgaagaagagaagaaggttatcctggtggcggagtacagggcgctccttgaggaaaacaaggatgccaagaggaggctggctgaggtggagaagaagaaccaggagtgcatgcatgagatccagtcgctgcgtgagctgctcagcagtggctcgtccgaggcaggagcggcagcaggaggaggaggaggaggaggagacagcagcggaggcggtcggcgcggccatcggaggacgccgagctattctctgggacatcacaggaagcagagcctgtcgtccatctcgaggatgatcagaatggggtcgaccatccatgaaggcgacgagagcgagaaggtgaaagctgaggagctgcggctgccagcggtggccacatcgtcgtcgcctctggagaacaagctacgcaaggacatcgacacgctgctggaggagaacctcgagttctggatgaagttcagctcgtccctgcagcgggtgcaggagttccagcgcaagcacgacgagctgatgcagcagctgcagccggcggccaccgacggcaacagtgacaccaagcagaagcagaagcaggagcagcagctgagggcgctcaagacggagctgcaggtgtggtcggagcagaacgcgatgctgcgaggggagctgcagtgcaggttcgcggccctgtgcgacgtgcaggaggagatcacggcggcgctggaacaaggaggaggaggaggagagttcacgtcgtaccaggcggccaagttccagggcgaggtgctcaacatgcagcaggagaacaaccgggtttccgacgagctgcacgccggccaggaccacgtcaagggcctccaggcccagatcgagaagaagctgcagcacgggggcgtcaccctgcctgacgccgacggacctgcagccggagccgcaaccccgccgccgctgccattgacgcgcgtcgcgtccaagtccaaggtgcctctgcagtcgttcctgttcccggccaaggccaagaagccatcgctgctggcgcgcgtcacccctgtcctccagaagcagcagcccgatctcaggttccttgccaagctgcaaccgaggtag
More
|
|||||||
| Protein seq | MLQRAASNAYSWWWASHIRTKQSKWLDSHLQDMEHRVKCMLLLLGEEADSFSKRAEMYYKRRPEVITQVEEVYRAYRGLADRYDIISGELHKANHTIATAFPDQVQYAMLEEEDDNIPKAFTPVDPRKIHKSTVDGLMKKKKGGEQPAGSKNKNTTSAPIDKDNAREEISRLQKEILVMQTEKEFIKSSYESGIAKYWDLEKQINEMQEQVCHFQDKFDESAVIEDDEARALMTATALKSCEDTIVKLQEQRKTSASQAMGESERVKVLREKLKAVMEGHGKSLPDCPDPCDKNVRKNHGFEMEEVQHIKLGEFETQTVLEKIKEHFERDGSISVAEITEHIDELVNKVVDLELMVSSQSSQIDRLCRENSELESCLQSLEEENASDPDEVNEKLKKLEEELVRVQALESCFHKDESTIRSNFSEAISRLSGISEMLQTSEHGVGGTLAVADGKEEEEEEEEDNDAGGMDDVAEPQVQTEAASDDVDPAGKSTADVDPAGKSTATQEEEAQAVDVGQEKAGGCSRERGSLVRLRHISSDDLGGCDDEAPAAVDDADGMRKQKKGQEGEGVEEEKKVILVAEYRALLEENKDAKRRLAEVEKKNQECMHEIQSLRELLSSGSSEAGAAAGGGGGGGDSSGGGRRGHRRTPSYSLGHHRKQSLSSISRMIRMGSTIHEGDESEKVKAEELRLPAVATSSSPLENKLRKDIDTLLEENLEFWMKFSSSLQRVQEFQRKHDELMQQLQPAATDGNSDTKQKQKQEQQLRALKTELQVWSEQNAMLRGELQCRFAALCDVQEEITAALEQGGGGGEFTSYQAAKFQGEVLNMQQENNRVSDELHAGQDHVKGLQAQIEKKLQHGGVTLPDADGPAAGAATPPPLPLTRVASKSKVPLQSFLFPAKAKKPSLLARVTPVLQKQQPDLRFLAKLQPR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.035045 | 1.618113 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0976500 | RBH | 0.0 | 0.233414 | 2.036057 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74510 | RBH | 0.0 | 0.148412 | 0.495930 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0976500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0049010 | RBH | 0.0 | 2.831310 | 2.004205 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048530 | RBH | 0.0 | 0.330285 | 1.979504 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048900 | RBH | 0.0 | 0.000000 | 5.655519 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048450 | RBH | 0.0 | 0.018116 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047950 | RBH | 0.321708 | 0.0 | 12.757304 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0709200 | RBH | 0.1593655 | 4.2977905 | 0.4931585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047420 | RBH | 0.0 | 0.109684 | 2.135919 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0710800 | RBH | 0.7993155 | 16.1525225 | 3.527397 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0048120 | RBH | 0.0 | 0.130816 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047910 | RBH | 0.0 | 4.032255 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0048190 | RBH | 0.0 | 13.119542 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0048150 | RBH | 0.102609 | 0.341562 | 0.248405 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G048240 | RBH | 0.0 | 0.0 | 0.871303 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0048000 | RBH | 0.0 | 1.165587 | 4.864839 |
