Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0047570 | OGI:01125800 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:44482709-44484861 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtaccaattcagcagctttctgcctaggattggttaccaataaaattgcaatatatgtcaacatcgtgtagttaatcacgaaacgttaatcatttctccattgagtggcaaaaaggtaatcctagatatacaagcaagattaggttttgggaccctctatccatttgcctgtcaggcacgtccaaagctgtccgaattccaaataatccatttgccttttcctctcttctattgagaaagatcaaccaatccaattgtcacaagacatgcccagtgaccaaagtcataattttgggtgttccactaacatcatgaagcgcgtcatcatctttcttcgcccattttccccctgcaagactgagactcattaggttcatggcagttgtccaactaactaacaagtgctaaagtttcaaaaaagaaaaaaaaaactaaggagtgctaaatacctacctttctgaagtgtattcttgagaatcaaggacgtgtaatattgggatgaagccttaagagatgaccaatcactgaaaacatactgccaaacttcagcatgggtttctctgtagaattaagaaggtacagtatgataacagtggaatgaacaaaatggagttatataacaagaaaagatatgactcccaaatgtaccattgccataatttccacaggctaatgttgtatttccagtactactgaagaatgttcagaaattactactaattgactcgagcatgttggaacagcaattgagcaacacccttgtttacagtttaccttatcttgcaatctctggatcctctgagcttcttctctgattgaaaaaaggttggtcttgatctcattacaaatcctcccttccagtagcctcactggaacccagagcttcggctccagttccaccacataagaaagtatagtctgaaattcctgatccgctgatatttccccaccatcaacctgaacagcacacccaaatcatcatattatctaaccctagtctcgagattaagattcagaaaatgaaattcatagcatcttgcttctagaatccagaccagctggaatcagatttaatcgagaataagtaccgatggttaatgcaatgagcagctgattgtatgaaaaagtgaaaaatcttaaatctgaaccaccatcaatgcgacatgtatagaggctggatttctatccattatctaaaaaaatcaatgcagtatgtcgtatgtttgggatgaatgggggttgattccttttctcaattcatgcttactatgcactactatctctcttcttcttcttcaaaaagaaagaaagaaaaaatcatgctgttgggatcatggcatggaatgaaatgtggtagtatgattcggcaacatggatttggaatagcatctcacacctcctcctggacggaccagttgccctcgaagaccttgaagtcgccgtcgatcatgttgaaggcgatctccctcctccgcgctccggcgggcagcagctgcaattcgccctcgtagcagtcgatggtgcccctggcgttgaacttgaaacccagcgcgagatcctgctcacccacctgcggatgaaagcacagataaggtcaacctaaattgattggtggtggaggaggaattgggggtacctggtagaggcgggcgaagcagtcggactggtcgaggaggcggcactcggagaggccggggatgaagccggcgaggccctcgtagtcggtgagcgtggcccagacggcgtcgagcggggcgtcgacgcggacccgggcgcggacgaggcggcggttgcgcttgggcagcttgcgcacctggatctcgaacccgtaccgctcgtcccgctcctccttgtggtgctgaccttcctgttcgtcttcgtcgtgggcgacgtcgggcggtgggtcgggcgaggatgagatgggggaaggtagcctcgacggagtagtgacggcgaggcggaggcgcgcatggggaatcgagtagctgctgccgctactggcggaggcggcggcgaggagacggagcggtgggtggaggaggccatgggaggaagaggagagcacggccatgtcagtcaactcaaagctcttttttccttttttgttttttttttcctttctccctgcctattggcaattgacggactagtag
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| CDS seq | atggccgtgctctcctcttcctcccatggcctcctccacccaccgctccgtctcctcgccgccgcctccgccagtagcggcagcagctactcgattccccatgcgcgcctccgcctcgccgtcactactccgtcgaggctaccttcccccatctcatcctcgcccgacccaccgcccgacgtcgcccacgacgaagacgaacaggaaggtcagcaccacaaggaggagcgggacgagcggtacgggttcgagatccaggtgcgcaagctgcccaagcgcaaccgccgcctcgtccgcgcccgggtccgcgtcgacgccccgctcgacgccgtctgggccacgctcaccgactacgagggcctcgccggcttcatccccggcctctccgagtgccgcctcctcgaccagtccgactgcttcgcccgcctctaccaggtgggtgagcaggatctcgcgctgggtttcaagttcaacgccaggggcaccatcgactgctacgagggcgaattgcagctgctgcccgccggagcgcggaggagggagatcgccttcaacatgatcgacggcgacttcaaggtcttcgagggcaactggtccgtccaggaggaggttgatggtggggaaatatcagcggatcaggaatttcagactatactttcttatgtggtggaactggagccgaagctctgggttccagtgaggctactggaagggaggatttgtaatgagatcaagaccaaccttttttcaatcagagaagaagctcagaggatccagagattgcaagataagagaaacccatgctga
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| Protein seq | MAVLSSSSHGLLHPPLRLLAAASASSGSSYSIPHARLRLAVTTPSRLPSPISSSPDPPPDVAHDEDEQEGQHHKEERDERYGFEIQVRKLPKRNRRLVRARVRVDAPLDAVWATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGELQLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISADQEFQTILSYVVELEPKLWVPVRLLEGRICNEIKTNLFSIREEAQRIQRLQDKRNPC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0047570 | OsLaMu_01g0047570.01 | Chr01 | 44482709 | 44484861 | - | NAM | ||
| CDS seq | atggccgtgctctcctcttcctcccatggcctcctccacccaccgctccgtctcctcgccgccgcctccgccagtagcggcagcagctactcgattccccatgcgcgcctccgcctcgccgtcactactccgtcgaggctaccttcccccatctcatcctcgcccgacccaccgcccgacgtcgcccacgacgaagacgaacaggaaggtcagcaccacaaggaggagcgggacgagcggtacgggttcgagatccaggtgcgcaagctgcccaagcgcaaccgccgcctcgtccgcgcccgggtccgcgtcgacgccccgctcgacgccgtctgggccacgctcaccgactacgagggcctcgccggcttcatccccggcctctccgagtgccgcctcctcgaccagtccgactgcttcgcccgcctctaccaggtgggtgagcaggatctcgcgctgggtttcaagttcaacgccaggggcaccatcgactgctacgagggcgaattgcagctgctgcccgccggagcgcggaggagggagatcgccttcaacatgatcgacggcgacttcaaggtcttcgagggcaactggtccgtccaggaggaggttgatggtggggaaatatcagcggatcaggaatttcagactatactttcttatgtggtggaactggagccgaagctctgggttccagtgaggctactggaagggaggatttgtaatgagatcaagaccaaccttttttcaatcagagaagaagctcagaggatccagagattgcaagataagtga
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| Protein seq | MAVLSSSSHGLLHPPLRLLAAASASSGSSYSIPHARLRLAVTTPSRLPSPISSSPDPPPDVAHDEDEQEGQHHKEERDERYGFEIQVRKLPKRNRRLVRARVRVDAPLDAVWATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGELQLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISADQEFQTILSYVVELEPKLWVPVRLLEGRICNEIKTNLFSIREEAQRIQRLQDK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0047570 | OsLaMu_01g0047570.02 | Chr01 | 44482709 | 44484861 | - | NAM | ||
| CDS seq | atggccgtgctctcctcttcctcccatggcctcctccacccaccgctccgtctcctcgccgccgcctccgccagtagcggcagcagctactcgattccccatgcgcgcctccgcctcgccgtcactactccgtcgaggctaccttcccccatctcatcctcgcccgacccaccgcccgacgtcgcccacgacgaagacgaacaggaaggtcagcaccacaaggaggagcgggacgagcggtacgggttcgagatccaggtgcgcaagctgcccaagcgcaaccgccgcctcgtccgcgcccgggtccgcgtcgacgccccgctcgacgccgtctgggccacgctcaccgactacgagggcctcgccggcttcatccccggcctctccgagtgccgcctcctcgaccagtccgactgcttcgcccgcctctaccaggtgggtgagcaggatctcgcgctgggtttcaagttcaacgccaggggcaccatcgactgctacgagggcgaattgcagctgctgcccgccggagcgcggaggagggagatcgccttcaacatgatcgacggcgacttcaaggtcttcgagggcaactggtccgtccaggaggaggttgatggtggggaaatatcagcggatcaggaatttcagactatactttcttatgtggtggaactggagccgaagctctgggttccagtgaggctactggaagggaggatttgtaatgagatcaagaccaaccttttttcaatcagagaagaagctcagaggatccagagattgcaagataagagaaacccatgctga
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| Protein seq | MAVLSSSSHGLLHPPLRLLAAASASSGSSYSIPHARLRLAVTTPSRLPSPISSSPDPPPDVAHDEDEQEGQHHKEERDERYGFEIQVRKLPKRNRRLVRARVRVDAPLDAVWATLTDYEGLAGFIPGLSECRLLDQSDCFARLYQVGEQDLALGFKFNARGTIDCYEGELQLLPAGARRREIAFNMIDGDFKVFEGNWSVQEEVDGGEISADQEFQTILSYVVELEPKLWVPVRLLEGRICNEIKTNLFSIREEAQRIQRLQDKRNPC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 44483232 | 44483483 | - | OsLaMu_01g0047570.02 | OsLaMu_01g0047570.01,OsLaMu_01g0047570.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.986828 | 4.058231 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0971700 | RBH | 3.725258 | 4.642981 | 1.026047 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g74010 | RBH | 2.972595 | 3.508738 | 0.271749 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0971700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0048660 | RBH | 1.265798 | 5.866834 | 0.476848 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0048150 | RBH | 0.555167 | 4.149059 | 1.470346 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0048540 | RBH | 1.884831 | 3.083309 | 0.995006 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0048080 | RBH | 0.247761 | 0.150204 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0047620 | RBH | 14.443254 | 12.252042 | 2.476744 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0705000 | RBH | 2.4975525 | 5.581674 | 7.46054 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0047090 | RBH | 0.862872 | 0.681495 | 0.596475 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0706200 | RBH | 9.037692 | 7.1956305 | 8.075006 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0047760 | RBH | 0.311266 | 0.277116 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0047550 | RBH | 1.018450 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0047850 | RBH | 4.673286 | 24.821264 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0047820 | RBH | 2.091061 | 0.585737 | 0.513886 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G047900 | RBH | 0.397090 | 1.990009 | 0.556103 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0047650 | RBH | 3.309736 | 17.272331 | 3.765698 |
