Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0033010 | OGI:01095400 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:33109496-33115294 | ||||||||
| Gene Symbol | ARF3, OsARF3, ETT3, Os ETT3, OsETT3, DLN20, OsDLN20 | ||||||||||
| DNA seq | gcaccactggtgcaacgcgcgaagcgcgcgttcacctctagtaaacgtacaaacatagtgatttgtaccgatacagaaacaaatgttgacaagcaaaccatacatagcacttctgaaataggctcataactaggtctagatcagaagctaaccatacatagaactaaggaaataggttcataataattaggtctacatttctgcataaacagggtgccgatggtacattaacgacgataaacatcatcgcccttccgactcgacagctagagctgcagtcaaacatacaatcgagtcgctttattcgcctgaccgcacgtaggtattcaggcgtgaggcagcaatacctacatgcaaagcatcaggaacggtgggaccataaccagaccgatgccgtttacatctgggatgaagcgtggagtggctgcgtctccacatgtacgtatccctccctgtgtaaatgtcagtgaccaaattagcttttggataatggtagagtacgaggtccaaaggtacaggagaagtgaattttcagcagtaaggaagaactagagcataccagttactcaagtagcatcatattcccaaaggagcagcacaaagggcatgaagagcaccaggcgtactgcaattgtacccaaacaagtctagcatccgtggattttggcaatcagtttcataactcacttccttttcaccatctttgtctgttgggataatcttctcggtcaaggaaaaaccaaaaaggcggcaactagttctgtcaacctcccttccaccattaccaggcttagtagcattcccaggTGTtgaagcctttccaattttaaactggtcccagctagtttcactgagcaacttgtgctgtcgcaaggctggttggctgtcatttccacttttgtcattgttcttgcttgccaattcaagctgtggtacccctgtttggtataacataagactggaaggtggagaaggtggcacagttgacagggagagacaatatccttcatttgcagatgatagtccattcatggtagctggggtgcacacataattctttaattcatatctgcttttcgctgaacatgcatcaggcaacattccttgaatcggaggaactgtctgagaaatttcttgaccttgcaagacctctgggaatccaatagattcaccgaagcttacagattggtgggtatagccagagtactgcactggaagtctgcttgttgaactgcccaacatgcagcttcgtgtatcagtaaggaatctccaagcatcaaaagacttacTttttgtaatgtcgattgactgaggagaacaagtaacacgatgggtcctagaacccatcaattcttgaccttgcaagaccctggggaacttttcagtttccaccgagtctggacgaccatttccatctacaggattaacacaaaaaccaataagcatatagggttaaagaatttatagatccaagtattgacctcgtgctcttggaactcacacagagctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgacagagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactctattttggctgttgcagtcagtagcatcctcccatcgaacctgtatgaaaagacagcaaatcaaattgctaacattagcgaatttgggtagtattgacaatagattcaccataaacgatttataatggacaaatcaaaatctatAaaaattctaagctgttaggcttcctatggggccttgataatatggtcttggtccaatccaataaaaaatatttagccccacctaaacagacatggatgccatcataaaaggtgttgatagcattaaaatgtatatggttacagttagtaaatcctctaaataattggttttgcacaacttttatgatccttacagcttacattacgaaagcaaacaagttccagcccatattagcaagcaataataacatgcctctagtattctcttcactgttttgtttctcctgtgtgctcaatgagcttcattgggcggcatagggcgacaaacattggcaactggcagaagaccaacgaaattcctcatcaagagagtttttttttagctgccaaccagatgttataaacagcaaaacggataaacagattgtacacatcctacatcattattgtccttttcaatccaaatatgcgtgaaacaattctctatcttattttttatcaaggggccaaactccccatttctattaatagaaatgcaggaactacaaagttctcaaactacaaaagcctagatacttaagaaattttactccagcagaaacaattctctatctgacacctgctaatggtaaagctacatgggaatcttgggatcagaagcgtgaaaaagaaatgcatgcgaggaccatttgtcttaagttgcctcaaggacttacaagaccatttgttctgattccctttagatgggttggcattttaTtTCTTGATATATCATCCCAATTGACTAATATGATTTGTCCCAACCACTAATGTGGGCTAAGCAAGAGACTGCAAAATGTAGGAATCAAAGTGATACAAATCATCTAATCATTTTTATAGCACACCATTTTTATTACGTATTGAATTTATTTCGACAACTTCTCAGTTCTCACTTGAGCATTTATTAATGTTTGCACATATTTACTCACAAACAAAAGATCATAGAACATCCTAAGTAATCTCTCTACTCCACAATCCACAAgatcaggcttggattcaaaatttgagtttgacaagaaggatgttgcacccatattcaagagttcagcacttcagctaacttgatgaatttattttaatgtgtgaaataacctcacatttaatccgatagacaaaacagtaactgaaattgactatatgtggtaccctaatatatgtttcaaagacttggcaggtagccaaaagtaaatgttccgtagtcaacaagcttaataaaaaagcagctcaaatgcataccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaacaccggcaatcattccagaacgcctacaacacagatagtaagacccaagaaagtattatgcaaaacaaaaaaaagatagttcaactgaaaaatgcaaacctctcattaacatcttcactctcaaaatgaaacttgaacctcattccaatacaaactggatggttgaagcttttcacgaacttccaatatggaacaacgtactcagaagcagtagccctacaaagtccaatgattacaatatgtgaatggatatatagtccaactgccccagagaaaatgacattgtattgagttggaccacacaaaatgaaacactatatgttttattcagcagaccttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccgacagtgtgcgcatctttgaactttcgctactaaaagctttgaaaatcgcttcatttttaagctgagtagctcttcgaacacccaatcttagctcaccatcatcacccctgcaaacgcttaaaatgcttcgttagaaaatatagacaagaaagcattagctttatggttaacacctggatcaagtgattaccggagaaataacaccgcatcccctgagaccagtttctttttaTtgacaaaggagctccatccagttgttaaaagatgcctgcgaggttgacctggaatgaaaagaatgttaaaaattcataatgtcatactttgctccatcacatgctataactacaagataacttgtgcatttcccttgtaatcaaaatggagataTtggcttggacaacaataagattggagagcatcctctatccactgtttcaaggacactactatctgagcaaaattgtacagttttattaacagaagtaattttcactgcagagataacacaccatatataacaaagtgatggaagtcacaaaagaataacataaattgtatcagaagATGAactagaaaggaaataatttgcatcctagggaatggcaaagacgactgaacacgcagttcagacaggcaaaactactgaccacttagaatgtcaaacattcaaagagttgaaaagctacacctgccatatattttgtagcattgactaaaatacttcctgacctctttcaaagctaaaacagtcacacataatttagcaatgctctgtatatgcccgatcatcaaacatgagtatgacgtacaagtttccgatacaaaggtatcaaatcaaacatttactagcaattaaataaatagattgtgtaacaagggcattgcatatcccttatcaagtactcggatgtcacctctataaatatggcggaacctccactttgctccatgcaaatccttggcaacaagctcttgagaaggccttagctgtttgtggtcctattaaggcacgaaagaaaacaaacttcgttagagttacatcacAagacaagcagtcacttgaagagtcaataggaaacaaatcaaacttctaatctcatcaccagaggtggaaagcaatcctcagcagcccgacgaggaacagagaaccctccatgtgtgcttgtatcagaggccgttagcgttttgcagaacatgtgcagcatcctggacttcctttcctcatcaccatcctccatgtcatcctccctttcgattccaccaccatgcaagttcctctcaaatacctgaaccaaccaaatgtaccattgataaatcaaatctgttaatagaatttgttAtgccaaaacaattcatcgtatcggtacaatatacaaattagaggcatgatagatgtgctaaatgaagctacattgtgcagagaaaacggcactcatactatatcaagctggccaagtagatctagcaagtcccaaatgatgtggctcactaaaattagaatgaaccaacaatgtctatttttagacatccaataaaaatcaaagctcattcaacacccatcacattgcagcttatgccacgcccaaagctgaaaagaggatgcaggcaaccaacatttgacgcccccaagaatctcatccaatccccaatcccggaagcacatgaatcaataagataattgaagcagcgttgcacctcgccctccgcccgcagcgccagtcgcgcgtacacctcgtccgtcgctgcatccgcctgcacaaagtccagcatgtaaatgcagcccaccacgcgcggcctcacagcgaaaaccctaccacgagcgacagcggttcactcacgcatagctcgacgtccacgacgcggcacgccacgtggggagggagggcaaccgccacctccccgcggatcctgccgccggcgccggccgcggagaggtgcccctgcggcaggtacacgaccgcgctgccccgccgcggcagcgacaccaccggcccagcgcacgcgtgccacagatcccggcacaccggcgccggcgccggcgcgtcctcctcgccgccgctcgcggtgtagttgaggtcgatgcccatggcggtggcacgcgcccggccgcctcccgccgctggggatccggcccaacagtcggtggctcgctgctcgccgcccctctcggacggccaagggggccggtaaaaagaggggagagccatcagcggcggccgcgaggatggggaggaggaggaggatgcggacgacgccattaatgcctccgagggcgtcgctctccagccatctcctgctcagcgctcagc
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| CDS seq | atggcgtcgtccgcatcctcctcctcctccccatcctcgcggccgccgctgatggctctcccctctttttaccggcccccttggccgtccgagaggggcggcgagcagcgagccaccgactgttgggccggatccccagcggcgggaggcggccgggcgcgtgccaccgccatgggcatcgacctcaactacaccgcgagcggcggcgaggaggacgcgccggcgccggcgccggtgtgccgggatctgtggcacgcgtgcgctgggccggtggtgtcgctgccgcggcggggcagcgcggtcgtgtacctgccgcaggggcacctctccgcggccggcgccggcggcaggatccgcggggaggtggcggttgccctccctccccacgtggcgtgccgcgtcgtggacgtcgagctatgcgtatttgagaggaacttgcatggtggtggaatcgaaagggaggatgacatggaggatggtgatgaggaaaggaagtccaggatgctgcacatgttctgcaaaacgctaacggcctctgatacaagcacacatggagggttctctgttcctcgtcgggctgctgaggattgctttccacctctggaccacaaacagctaaggccttctcaagagcttgttgccaaggatttgcatggagcaaagtggaggttccgccatatttatagaggtcaacctcgcaggcatcttttaacaactggatggagctcctttgtcaAtaaaaagaaactggtctcaggggatgcggtgttatttctccggggtgatgatggtgagctaagattgggtgttcgaagagctactcagcttaaaaatgaagcgattttcaaagcttttagtagcgaaagttcaaagatgcgcacactgtcggctgtggctgattccttgaaacatggaagtgtttttcacatttgttacaacccaagggctactgcttctgagtacgttgttccatattggaagttcgtgaaaagcttcaaccatccagtttgtattggaatgaggttcaagtttcattttgagagtgaagatgttaatgagaggcgttctggaatgattgccggtgttagtgaagtagaccccatcagatggcctggttcaaagtggagaagccttctggttcgatgggaggatgctactgactgcaacagccaaaatagagtatctccatgggagattgagatagttggtggttcaatctctgttgctcattctctgtcggcatccagttctaaaagaaccaaattatgccctcagggcaatttggacgtgccagctctgtatggaaatggtcgtccagactcggtggaaactgaaaagttccccagggtcttgcaaggtcaagaattgatgggttctaggacccatcgtgttacttgttctcctcagtcaatcgacattacaaaaAgtaagtcttttgatgcttggagattccttactgatacacgaagctgcatgttgggcagttcaacaagcagacttccagtgcagtactctggctatacccaccaatctgtaagcttcggtgaatctattggattcccagaggtcttgcaaggtcaagaaatttctcagacagttcctccgattcaaggaatgttgcctgatgcatgttcagcgaaaagcagatatgaattaaagaattatgtgtgcaccccagctaccatgaatggactatcatctgcaaatgaaggatattgtctctccctgtcaactgtgccaccttctccaccttccagtcttatgttataccaaacaggggtaccacagcttgaattggcaagcaagaacaatgacaaaagtggaaatgacagccaaccagccttgcgacagcacaagttgctcagtgaaactagctgggaccagtttaaaattggaaaggcttcaACAcctgggaatgctactaagcctggtaatggtggaagggaggttgacagaactagttgccgcctttttggtttttccttgaccgagaagattatcccaacagacaaagatggtgaaaaggaagtgagttatgaaactgattgccaaaatccacggatgctagacttgtttgggtacaattgcagtacgcctggtgctcttcatgccctttgtgctgctcctttgggaatatga
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| Protein seq | MASSASSSSSPSSRPPLMALPSFYRPPWPSERGGEQRATDCWAGSPAAGGGRARATAMGIDLNYTASGGEEDAPAPAPVCRDLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGRIRGEVAVALPPHVACRVVDVELCVFERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRGDDGELRLGVRRATQLKNEAIFKAFSSESSKMRTLSAVADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHFESEDVNERRSGMIAGVSEVDPIRWPGSKWRSLLVRWEDATDCNSQNRVSPWEIEIVGGSISVAHSLSASSSKRTKLCPQGNLDVPALYGNGRPDSVETEKFPRVLQGQELMGSRTHRVTCSPQSIDITKSKSFDAWRFLTDTRSCMLGSSTSRLPVQYSGYTHQSVSFGESIGFPEVLQGQEISQTVPPIQGMLPDACSAKSRYELKNYVCTPATMNGLSSANEGYCLSLSTVPPSPPSSLMLYQTGVPQLELASKNNDKSGNDSQPALRQHKLLSETSWDQFKIGKASTPGNATKPGNGGREVDRTSCRLFGFSLTEKIIPTDKDGEKEVSYETDCQNPRMLDLFGYNCSTPGALHALCAAPLGI |
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| Function | Auxin response factor 3 [UniProtKB/Swiss-Prot:Q5JMM1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0033010 | OsLaMu_01g0033010.01 | Chr01 | 33109496 | 33115294 | - | NAM | ||
| CDS seq | atggcgtcgtccgcatcctcctcctcctccccatcctcgcggccgccgctgatggctctcccctctttttaccggcccccttggccgtccgagaggggcggcgagcagcgagccaccgactgttgggccggatccccagcggcgggaggcggccgggcgcgtgccaccgccatgggcatcgacctcaactacaccgcgagcggcggcgaggaggacgcgccggcgccggcgccggtgtgccgggatctgtggcacgcgtgcgctgggccggtggtgtcgctgccgcggcggggcagcgcggtcgtgtacctgccgcaggggcacctctccgcggccggcgccggcggcaggatccgcggggaggtggcggttgccctccctccccacgtggcgtgccgcgtcgtggacgtcgagctatgcgtatttgagaggaacttgcatggtggtggaatcgaaagggaggatgacatggaggatggtgatgaggaaaggaagtccaggatgctgcacatgttctgcaaaacgctaacggcctctgatacaagcacacatggagggttctctgttcctcgtcgggctgctgaggattgctttccacctctggaccacaaacagctaaggccttctcaagagcttgttgccaaggatttgcatggagcaaagtggaggttccgccatatttatagaggtcaacctcgcaggcatcttttaacaactggatggagctcctttgtcaAtaaaaagaaactggtctcaggggatgcggtgttatttctccggggtgatgatggtgagctaagattgggtgttcgaagagctactcagcttaaaaatgaagcgattttcaaagcttttagtagcgaaagttcaaagatgcgcacactgtcggctgtggctgattccttgaaacatggaagtgtttttcacatttgttacaacccaagggctactgcttctgagtacgttgttccatattggaagttcgtgaaaagcttcaaccatccagtttgtattggaatgaggttcaagtttcattttgagagtgaagatgttaatgagaggcgttctggaatgattgccggtgttagtgaagtagaccccatcagatggcctggttcaaagtggagaagccttctggttcgatgggaggatgctactgactgcaacagccaaaatagagtatctccatgggagattgagatagttggtggttcaatctctgttgctcattctctgtcggcatccagttctaaaagaaccaaattatgccctcagggcaatttggacgtgccagctctgtatggaaatggtcgtccagactcggtggaaactgaaaagttccccagggtcttgcaaggtcaagaattgatgggttctaggacccatcgtgttacttgttctcctcagtcaatcgacattacaaaaAgtaagtcttttgatgcttggagattccttactgatacacgaagctgcatgttgggcagttcaacaagcagacttccagtgcagtactctggctatacccaccaatctgtaagcttcggtgaatctattggattcccagaggtcttgcaaggtcaagaaatttctcagacagttcctccgattcaaggaatgttgcctgatgcatgttcagcgaaaagcagatatgaattaaagaattatgtgtgcaccccagctaccatgaatggactatcatctgcaaatgaaggatattgtctctccctgtcaactgtgccaccttctccaccttccagtcttatgttataccaaacaggggtaccacagcttgaattggcaagcaagaacaatgacaaaagtggaaatgacagccaaccagccttgcgacagcacaagttgctcagtgaaactagctgggaccagtttaaaattggaaaggcttcaACAcctgggaatgctactaagcctggtaatggtggaagggaggttgacagaactagttgccgcctttttggtttttccttgaccgagaagattatcccaacagacaaagatggtgaaaaggaagtgagttatgaaactgattgccaaaatccacggatgctagacttgtttgggtacaattgcagtacgcctggtgctcttcatgccctttgtgctgctcctttgggaatatga
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| Protein seq | MASSASSSSSPSSRPPLMALPSFYRPPWPSERGGEQRATDCWAGSPAAGGGRARATAMGIDLNYTASGGEEDAPAPAPVCRDLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGRIRGEVAVALPPHVACRVVDVELCVFERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRGDDGELRLGVRRATQLKNEAIFKAFSSESSKMRTLSAVADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHFESEDVNERRSGMIAGVSEVDPIRWPGSKWRSLLVRWEDATDCNSQNRVSPWEIEIVGGSISVAHSLSASSSKRTKLCPQGNLDVPALYGNGRPDSVETEKFPRVLQGQELMGSRTHRVTCSPQSIDITKSKSFDAWRFLTDTRSCMLGSSTSRLPVQYSGYTHQSVSFGESIGFPEVLQGQEISQTVPPIQGMLPDACSAKSRYELKNYVCTPATMNGLSSANEGYCLSLSTVPPSPPSSLMLYQTGVPQLELASKNNDKSGNDSQPALRQHKLLSETSWDQFKIGKASTPGNATKPGNGGREVDRTSCRLFGFSLTEKIIPTDKDGEKEVSYETDCQNPRMLDLFGYNCSTPGALHALCAAPLGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.110712 | 1.847207 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0753500 | RBH | 0.662511 | 0.509051 | 4.269641 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g54990 | RBH | 0.444549 | 0.339723 | 1.102794 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0753500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033920 | RBH | 0.000000 | 4.891325 | 11.372365 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033470 | RBH | 0.054806 | 0.685148 | 4.305936 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033910 | RBH | 1.024839 | 1.267301 | 9.104648 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033170 | RBH | 0.026820 | 0.186163 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032920 | RBH | 1.146160 | 1.261638 | 20.217739 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0458000 | SBH | 9.0569955 | 5.9298625 | 25.297407 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032640 | RBH | 0.263962 | 0.207318 | 1.124388 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0520300 | RBH | 5.6812775 | 2.1884405 | 41.9144765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032830 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032890 | RBH | 0.441746 | 1.165801 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0033130 | RBH | 2.657842 | 0.877597 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033220 | RBH | 0.198797 | 0.480363 | 1.477654 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023330 | RBH | 0.043568 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033480 | RBH | 0.286415 | 1.304119 | 3.009354 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033080 | RBH | 0.843973 | 2.956188 | 7.063972 |
