Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0029990 | OGI:01088660 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:30820997-30825856 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccatggccgcctcctcctcctcctcctccccttcctccctccgcctcctctcaaaccctaggtagcacgagagtcccccactcccagccccgccgcgccgatctgtgctccctcccgccgctagatttccggtggaaaagcgcgtgtttttagccctttttccccccctctccggttttgctctctgtggacgcttcccggctctgctggttttttcctctggggaaggagctgatggagccacgggttgggaacaagttccggctcggtcgcaagatcgggagcggctccttcggggagatctatctcggtgcggggcttctcttgcgcaaaagtttgggttattttttggggggttggttttttggtgcttgatcggtttctggtgttgctgtactgagttgtgggttgtttgttcatgcaggaactaatatccagacgaacgaggaggtcgcgattaagctggtctgtgctcttctgctggggattagctgcttagatctttgttaaaaaaATatattcttgatatgctgctttctgatgcttcgaagcagtggttctgctgttttagcctgctgtttgtgcttatccgatgttttggccactgcaacttctgttgttccagctcctgtcagctcgtgtttttgtatctatagcatagttagtacttttatgccgctttcctcgaaacaatacaaacttttcagttggatttctattcagttcctcatcccttagcagctctagtacttactagtaggtgaatcctttggtagtttggtgtagtcacttcattaaattggcatgtcttgatgcgcccacctaatattggtaaaccggtgactgataaagtgatattcagctattagtagaatactgcttgatactcgatagctaaaatgagcaaacagagaaatgaggaccagtagcatgatttccaccagtagagtgctaatatttgtagtgatgaaatgatgagaaatagatcggccttgtcacatgatattaatatccatatagcttgttgccTtttatattattaatttgagaatgcaaggtaatttatcttagttgctacttgctaccattgtttcaaagaagtttgcatgtgattgctttgttTCttatacaggaaaacgtgaagacaaagcatccccagttgctctacgagtctaagatttacaggattttgcaaggaggaagtacggaagctctacattgtgcatttgtatactgttttaatgcttaaaagagactatgtggtttgactatctttattcttgcagccggaattccaaatgtcagatggtttggtgtagaaggagactacaatgtcttggttatggatttgctgggtccaagccttgaggacctatttaatttttgcagcagaaaattatctcttaagactgtacttatgctcgctgatcagatggtatgcctactcttaaccactaagtagttatacattaataccttttacatagcaaagaatcaactgtagatctgtctcagttactaactttcatcgtggcctatagttctgcccctgctacccacaccaacgttttctttgtgcagacacattcttacatgttgacatttaaattctgtttctctctttgtgttttagttccatgtttgttcttacatgattatctttaagtgatctcggtccctctcttgtagataaaccgagtggaatttgtccattccaaatcttttctccatcgagacattaagccagacaattttcttatgggtcttggtaggcgagctaatcaggtgggtaaattgcagctttcacttgacacttcagttcttgatgatcaaattttgctgggttgtttaaccactttcttcatcaatctgtctcttatttcaggtctacataatagacttcggtctcgctaaaaagtacagggatacctccactcatcagcacatcccatataggtacaatgaaaagggcaattgctctgcattcatgattagtttatacttttctaattacaatagcataagttatctgagttaattacagttgctcagcattcactactatagtctggaccaagtctgagttaatttatgcttttctaattacaatagcataagctctacctggtaaatactataccaaattaagccattttgatagtgacctcagtagatcctcacaggcccacagagtctagtgggagaacaagaaagcataaaagggcattgcacataaaagggtcaattttgtcaaggttctgacttgctaattaatgctgcagggagaacaaaaacttgactgggacagcaagatatgcaagtgtgaacacccatctcggaattggtgagatttggcaccaaccagttcatgattttcttttttaccattatggctcttgcctgtctatactccatacttcaatctgttgtcaagtggacttcaatctgttgtcaagtggagcactttcacatcgtcgcgctgcacataggtctgactaaattttttgttccttttgtatggccagaacaaagccgaagagatgacttggaatctcttggatatgtacttatgtactttttaagggggaggtgggttttattggtttacccatttgtgtacccttttatgtacaatgcattaatctttacattgttttctcttcagtcttccttggcagggtctgaaagcaggaacaaagaaacaaaagtatgagaaaatcagtgagaaaaaagttgcaacatcaattgaggtactatatttgtcacatatgtactgtaagccagtgcttcctttcaattctgttggctctaatgttcttctatttcaggctctatgccgaggctatcctactgagtttgcatcatatttccactattgccgctcactgcggtttgatgacaagcctgattattcctaccttaagcgacttttccgtgacctttttatccgggaaggttagttttgatgtcatgcttgaagtggtccagagcaggcacattattttccctgttacactttaaaaaaaaaaagccaagaaacattgatttcctcctccatataactgtaaaaggcttattctactcaaaatatccaagcatctagttaattattgttattctgctttgcaggttttcagtttgactatgtgtttgactggacaatactgaagtaccagcaatctcaaattgctagtgctccaccccgtgcagtggtaagtctctgccttaacagtcaacacccccacaataaatgcatattctatgtagacatctgttggggaagttttgattagtagcctatgttgcagggccatggtgcaggaccttctgggttagcaccaccagcattgcaaaacgacaggcagtcaggtaattatctacttctgatcattccatgtgaccagatcgtccttttctcttgcaagtgattctgggtgatttgcattattgtatgttagaacaccttattcactgtaaggttcatttggttttgtgatagcatgACaaaaactagagaggacaagtttgttgtgtttgcacacaaataatgagtttgttttctcattcatttgttattttaggtgttgatgaaggaaggactagtggttggtcatcaatggatcggcgccgtgccccaccccctattgcaagtgttgggactttggctaaacagaaggcacctgtgggaaatgatgcttctttttctaaagagcccgtggtgagttagtgagttttgttcatatttttCtttgTgtggatcataagaattggcaaggtgattgcaaaataattagatagatgctagtcagtatttttctgttcatacaccactgctgccctcctttttttatgggtggtttttctgtagcctaataaacttcgttgtgtctcttcaacaattgacattatagctctggctgttgctattttctgtattgattcaaagcattagctggaattctttagtctaacgattgaaaatcattaattttacttccagtttgttacttattggctgttttactatttagatatctgcctcgaattttttgggacgatctagtggatcttcaaggaggcctgctgtttcaagtagccgagatgtgatgcctactgatacttctgaaccatctcgaactcgtgccactgatgcaagccctggggcatttcggagaacctctggtccccagaaaagctcaccagtcaattcggcagaaccaaagcattcatcttctgcccgacactcatctaacgttaagaattacgagtctgccctcaaaggtattgaaggtcttaattttgacggggatgagagggttcagtactagcaatgaaggaacatctacatgtgctctgtaaaaatcataatctgtagatgagcacagcatctcctgttgagttttgtatcacaggatatgttaggaggatgtgaagtgcttttgccagatgatggtcctctggacacggtaaataagcggtcagcctgaggtgcctgaaatttagctcttataattaatgtgacggttctgtaaatgtctttattattcgtttgctggggcctctctagttcattggtcagctgtatccccatttctattccttccagtaccatgtccagatactatgtctcggtatagccaagtgcccaagtgcaactggtcaaacttgtatttggaaactggtgaactcgaaaatgtagaatgtttcatcagatcattgattgacctgaagatacttctgactaatgttcttttgaaacattctggatgtagtgtatcattgggatgagacgctgtttgtcgccattaaaatccaaagataggaaccacccaaattttcatgctgcttccctatctggt
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| CDS seq | atggagccacgggttgggaacaagttccggctcggtcgcaagatcgggagcggctccttcggggagatctatctcggaactaatatccagacgaacgaggaggtcgcgattaagctggaaaacgtgaagacaaagcatccccagttgctctacgagtctaagatttacaggattttgcaaggaggaaccggaattccaaatgtcagatggtttggtgtagaaggagactacaatgtcttggttatggatttgctgggtccaagccttgaggacctatttaatttttgcagcagaaaattatctcttaagactgtacttatgctcgctgatcagatgataaaccgagtggaatttgtccattccaaatcttttctccatcgagacattaagccagacaattttcttatgggtcttggtaggcgagctaatcaggtctacataatagacttcggtctcgctaaaaagtacagggatacctccactcatcagcacatcccatatagggagaacaaaaacttgactgggacagcaagatatgcaagtgtgaacacccatctcggaattgaacaaagccgaagagatgacttggaatctcttggatatgctctatgccgaggctatcctactgagtttgcatcatatttccactattgccgctcactgcggtttgatgacaagcctgattattcctaccttaagcgacttttccgtgacctttttatccgggaaggttttcagtttgactatgtgtttgactggacaatactgaagtaccagcaatctcaaattgctagtgctccaccccgtgcagtgggccatggtgcaggaccttctgggttagcaccaccagcattgcaaaacgacaggcagtcaggtgttgatgaaggaaggactagtggttggtcatcaatggatcggcgccgtgccccaccccctattgcaagtgttgggactttggctaaacagaaggcacctgtgggaaatgatgcttctttttctaaagagcccgtgatatctgcctcgaattttttgggacgatctagtggatcttcaaggaggcctgctgtttcaagtagccgagatgtgatgcctactgatacttctgaaccatctcgaactcgtgccactgatgcaagccctggggcatttcggagaacctctggtccccagaaaagctcaccagtcaattcggcagaaccaaagcattcatcttctgcccgacactcatctaacgttaagaattacgagtctgccctcaaaggtattgaaggtcttaattttgacggggatgagagggttcagtactag
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| Protein seq | MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPTDTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKGIEGLNFDGDERVQY |
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| Function | Casein kinase 1-like protein 2 [UniProtKB/Swiss-Prot:Q9CAI5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0029990 | OsLaMu_01g0029990.01 | Chr01 | 30820997 | 30825856 | + | NAM | ||
| CDS seq | atggagccacgggttgggaacaagttccggctcggtcgcaagatcgggagcggctccttcggggagatctatctcggaactaatatccagacgaacgaggaggtcgcgattaagctggaaaacgtgaagacaaagcatccccagttgctctacgagtctaagatttacaggattttgcaaggaggaaccggaattccaaatgtcagatggtttggtgtagaaggagactacaatgtcttggttatggatttgctgggtccaagccttgaggacctatttaatttttgcagcagaaaattatctcttaagactgtacttatgctcgctgatcagatgataaaccgagtggaatttgtccattccaaatcttttctccatcgagacattaagccagacaattttcttatgggtcttggtaggcgagctaatcaggtctacataatagacttcggtctcgctaaaaagtacagggatacctccactcatcagcacatcccatatagggagaacaaaaacttgactgggacagcaagatatgcaagtgtgaacacccatctcggaattgaacaaagccgaagagatgacttggaatctcttggatatgctctatgccgaggctatcctactgagtttgcatcatatttccactattgccgctcactgcggtttgatgacaagcctgattattcctaccttaagcgacttttccgtgacctttttatccgggaaggttttcagtttgactatgtgtttgactggacaatactgaagtaccagcaatctcaaattgctagtgctccaccccgtgcagtgggccatggtgcaggaccttctgggttagcaccaccagcattgcaaaacgacaggcagtcaggtgttgatgaaggaaggactagtggttggtcatcaatggatcggcgccgtgccccaccccctattgcaagtgttgggactttggctaaacagaaggcacctgtgggaaatgatgcttctttttctaaagagcccgtgatatctgcctcgaattttttgggacgatctagtggatcttcaaggaggcctgctgtttcaagtagccgagatgtgatgcctactgatacttctgaaccatctcgaactcgtgccactgatgcaagccctggggcatttcggagaacctctggtccccagaaaagctcaccagtcaattcggcagaaccaaagcattcatcttctgcccgacactcatctaacgttaagaattacgagtctgccctcaaaggtattgaaggtcttaattttgacggggatgagagggttcagtactag
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| Protein seq | MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIASVGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPTDTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKGIEGLNFDGDERVQY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0029990 | OsLaMu_01g0029990.02 | Chr01 | 30822925 | 30823689 | + | IsoSeq | ||
| CDS seq | cctccactcatcagcacatcccatatagggagaacaaaa |
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| Protein seq | PPLISTSHIGRTK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.978945 | 49.913792 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0570500 | SBH | 8.494839 | 9.448439 | 24.833668 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51200 | RBH | 8.385792 | 6.967507 | 3.206549 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0570500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030940 | RBH | 4.082895 | 113.627861 | 23.315022 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0030540 | RBH | 1.227141 | 17.653313 | 8.874094 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030920 | RBH | 7.011661 | 56.641254 | 24.903898 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0030190 | RBH | 2.178359 | 2.609317 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029850 | RBH | 30.282087 | 64.002769 | 47.430462 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0486700 | RBH | 33.3446275 | 55.098616 | 37.2117235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0029570 | RBH | 3.094016 | 6.224331 | 5.240393 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0478400 | RBH | 41.831715 | 53.6609665 | 63.654312 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029810 | RBH | 1.576094 | 1.074395 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029770 | RBH | 3.197592 | 40.806080 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030040 | RBH | 39.013237 | 66.763374 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0030210 | RBH | 6.259745 | 5.962353 | 5.085718 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0029010 | RBH | 0.438982 | 15.266308 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G030460 | RBH | 4.608541 | 15.112608 | 7.135485 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0030150 | RBH | 9.298011 | 78.610397 | 27.373367 |
