Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0027480 | OGI:01083230 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:28726006-28735128 | ||||||||
| Gene Symbol | OsRFP, OsZFP1, UCIP2 | ||||||||||
| DNA seq | ggtcctcccgagttacggaattaggagaaaacaaaatgtacagaagagcacatgttctgttctgatttttaatctgatggtagatacaatgtttgcctagaaatgacattgtgagtttttttgtcggtccgccttatgatacagatgggggcgaactgagtaatttaaaatattctacaccgaagaaaatgatcaatgttatggctgtacagtttaggaagctgagttactcccggatcacaacaaagtgagcaacaaatacaggtagcagaatggtctaccgtttcttatatacaaaattgagctgaatatttgtcggaagtaaataactaataagattattcctgttcgttatccacttcttccggttgacaaagctgtcgtcttgcagatggggcataaattctttaccatcaaccattgttttatgcaatcttcgtggtacctgtggccacagtcaagggttccaatgcattctttaacctgatactcttcctgcaataccaagaaaagatttttagaacaaggatatgtcgatttgactagactaaatgttggtggatgagaaaactacataatctgataatgcagataaggaaccagtgcaatagtatttgtttttctaagcccaattggaacttatggcttgttttagcaacccacacttgtccctcttaacacccattcaaattccttaagcgcctgacaagaaatcatgaatgatatttaccaagacgtactctcaagtaactttatacaatttgagcaccgtggacctgtccacctttgcaaatactaatttacactgcatatacttagaaatcatagtacatcttacataaaccaattctcttgtaagttttcccacctgttggaaccatactttatgggtgataaaatggaacgttgcatattactatgatataacactagccaattccacactgcaagctttaaccataactttggatccaaaagtgtaaagtccagaccgttcgaaagctaggtttagttgtcccaggaaatgcataagctattatatttcaaaactaatctgaaaataatagtgaaagagaaggacctggcatattatgcaagcatcattctccatggaagattcagaagacttattagacatgcaggatgatcctggcacaaataagctagtcttcaatttctctacaatgtagctttttgccagaccagtatttacatctccaatctgctcttctaatgctaaaagctcctgtaatgcaaataaaaagaataaatcagataaagcctgctgtggacagaactaaaaaaaggtgacctaaataagctgggatccatacctcatatgtcatgctgtctatatctagccgcatatctctatgctcatctacaacatttgacacttcatacaatcttgaaaaatccattattgtagcatgctgcagcaccgaagaaaaaatatatcaattttgagtgtgtgatatagaattgaagagcaaggtgtttaacgtgacctacattctactgcaatatgaacagcctgaaccaagggcaaatatgtcttaattcccaacaaatggactaatggcagcaggaaacaggaagtaattcaacatgcagataaaatgaaaaatatacaagtactgtttcctttgactagaaatgcattaacatagataatgcgatgtctgtaaatgctgaaaaccactgtctcagtaaaaaaaaaaaaacaaaaaacAaaaaacctaacccttaagcatacaaacatacatgtataaaaaaaattcaacttatctaacatacactccttaagtggttcaatagatcacattcactatataaatataggccgcaccgggatccaaacaatatggttttattattattgacagtatattaagacaaaaaatagtcaaagccctgcaccagtgctcgtggaaagtaaaagaacaatatctgtagattgagtaataatcaataacaaagaagtgaacatattacacccctcaatattgtcgggtttgtctaaaagataccctcaactatgaaacctgacatttttaacacccctgtaacgatcgaaatcgatcaaaataccatcccccccccccaaacAaaaaaaaaaagaacaatataacctggttttaatagtggttttcatgatattcacatcatttttttttacttagattcaactttttacatctcttgctaactaggtggcatacaagtaaagggtactatttggatattaaaataatgaaaaccaccaataaaaaccgggttgaattgcctttcgtgcccggggggggggggggtattttcaccggtttcggtgtaaaatgtccagtttcattgttcaggggtattttttcgacaaacagatatttgagggatgtaatgcggattgagctagagtcaagtggactgtggatatcataaaactatactactagtactaatgcaaaaactaccaaagaatggcatttcagaaaactacactttaaaagagaatgcgaactaacgaagtagtttcgtgaaatagtttgaaagtataaggttgatcttcttcatttgaagtatgtagttttgtgaaaatatagatgttagcacatcaaaggcatttaagaagtaatgtacaggttcatatgccaaattgctacaagagtctcaaactttcccctaacaggaagagagctcactacacagataaaattgtcaaataagtcaaacagccagcaacccaaataattattgcacatcgcaaatcatagggacacaaagtgaagtacaaactaacctcaggtggcaggattcgtatatttctgtggttcactggatttgccaagagtggatgatgtggaggcccaaaagtacgttcagaattagagaaaagaactggaatccttggacccaaatggaaccggttgccagaatgatttacaccatgtaagacaggattattgtggcattgttggtaaggagcttgcacttgtgtatgatcaagcagattatgagcatgcatgccagcatgctgatgaaaatagggtaaaggccctcgacataaggttgaagggccattctgatattcacggaagcttccattcactgtttctgtcatacctgaacgggaaaatctgcctgctgaaagcataaaggtttccaattactcctagtgtgaacacataagttcattctgtaggtggagacattttttgaaattttcgccactcttaccatgcaagctaaaccactagtccagacatcaaggcacattgaacaactattcaagtcattagaaagaaggaaataaattgatgacgatctaaggatcaaacgaaaagttacctggagcattattcattccattgacatattcccactgtggtattccatcagcaataccatttgcagactgggaaatccatgtattgctagtaggttgaaagcactggctgatgtgactagttggaaatgcataattaccatgctgtgctgattctgggtgagcacccatcaaattaaagccattactgggaatggaagatccttccatagatggccaactggtctggctatggtactctgatgggttatatgatgcagtgttaggcaaaacatttgactcaaaagaaggatcccatggcctacgtgtaggattcagagatgcatgagaagagcttgaacttgcaaatccattagcacagtggtaacttcctgcaactgcagcatttttccttttaatgaatcctctagcactttcaccagcattttcatttctgctaccttcatccatgcttcctagaacaacttggtttgatggcaatccgaagctctgagtgtgagaaacatattggttcatagatgttgtcgacatgcaggggttgtacatactggatgggaagacaaaacctgaataaactcctaaatttggaggcaagttatgaacaggttgatgtggatggttcatgcccgcatcatagtaacttcgcatatcagatagaccaatgtttgtagcatttcctacccctctgacagcatgttgtgcaccttggtcagatgaatcattcccagtgcgattaaaactttcagaatgaatatgagagtgcccttgttcagtttctagatcaattacttggggagcgcataccgtatttctatatgccataacgccaattattatttgtcttagctgcaagaaagaactgctgcaagctaagtcactaactatgatttatcatcacctctacctgaaaatcagattaagaaaaacaaatgttaagttattgtaatcgctatgtgatgcataatgtgacacatgtagaacttggcaatttacatggtagtagacttgcatattgataaacaaaaggtcaatattgcaacgacaaagaggagtggttctgatgaaagttgattcagagaaacataataactagctatatataggtaacaagagatgagccattgtccctaaattatagggttctagctaggtcaacagcacaagtttaatcctacacatgtggtggttcacggttcgggaaccatcaactgataaattgacatgtttagggagggagctataccacaatctacacaagagaacaatactgaataaagacgttaaaaagagcaagcttttaaaaggatttcgtccagatcccagctgaattcctggatgcaatggtattaggtagttagctttgaagaaaaaaaaaggaaagaaagagcaggtgcaaggtggagtttaagaaatggaccaccttcagagaaaaggcaaagcaaaacataacatagaattgcataaagagatgggatgcttttgaggaaggaaaaaaatacaaaaccatataacatgttggtagcataacaagcaccagggttgtgaacattaatacctatatgtggcacttcttaacttatgtttttttaggatgatagttggggagtttcctactgacttctcgatttattatgttttaatgcttaatcatccacttatgcattaatgaccttctgtagagctttctgttcgggtatgccttctcttatcttttgcgaaatactgctaatttaggacaagttagagaacctaggaagaatcaagtgtatgacactgcaactagaagatatgtaccaaaagagaatactctctaaacactgttaattttgttcattatctggccctcccttatctttctagtcatcatctaccactgttcccaccttgtgtgatgtttcacttaagaagaccctttctgtcacaatgaatttataggtatgaaactttgaaaggggtgtgcatgtgtgcatacaaactttgtatagttctgcttatcacccgtgaaaccacagggtgaagagataattagcgtgcataattttagaatgttagaataagctttgtgagattaacactaactacagtctacaggaggtactaaagattgcgtatgctcacagtaggctgctaaacttccacagataaatacatgtattaaataagacatgtcactgcttctctaagcccctgttcttcccgactgttggagtgagctactccctcgtttagtgtgatcatacttcccaaactgctaaatggtgcatgtttttttaaaaaaaaaataagtctatatagaagtttctttaacaaatcaaataaatccattttttaaaatttatactcctccatcccaaactataaggcgcaaccactttttttctcatgtctcaaaatataaggcatgcatgaatgcattaactagcacctcttggtcctttatatttggtttgttttaaatcagctaccatcaagccccccaatcacattgcttgcatgtatggatgtgatccaatcgaggaggtgattaaattcattcttggtaattgcgataggagtgtttgagccttataatttgggatggagggagcaataattaatacttagttcattatgcactaataatcacccgctgtgttttccgcagctcagccaagcagctccgaaataagcctaagtttgtctatctgtgatactgcaagcaggttattaacaatatcttgaacagtgaaacaaacatctagccaatttgatccagaactagtagtatcatccattaaaacgctcaaagtagggtttgtattattgaagttgcgtattgttaaaaatgaatgccactagttaaggttctataactgcattttatgagctgaaggtattgcacatcaactacatacttgagagcatctggttatggcaatatatgaactaaatgctcaacctttgccctacaagcagtggcagagctagggcacaaatcaactaatggtccacacttgaagaagattgagttgcataacaaagaaaccccatttcctactccaagcaattggtatggctaacttctgcaaaggcttgcaaggttcaactataatttgccaagaagtcttcaatctagcactattctcccatactccaactgttattgcaaaagaggtttataaaaaagagaatttcactattggatagaaacatcttttgtcaacataatgctattacttccaaacagaaattgatgaaatacacataggtgaaacaagaaacatcaaatagtcaacatgttaccataacaagagcagggtgaagtttaaggatgcagttacttatacaaaataatcaatctgtatcctcaattgcacctcttagtaagtttttattcctcagcaaagaagaagtgtgtaagcagtattaccaaaagtgaaatatgacaaaaccatgcacacgcctcttgcattcaattactatacaaggatttccatctgagataaggttaatgacattttttatgcatgaacagtggattgctaacaatagctgtgaccacactcctgaaggctctaggacatgtagtctgcctaggggacaactaagtgctagcttttactcaataaagtacaccaaacatttgtattatcaacgacagacctatggtcagagcagataccaccaagacacgtcaccaatcaacctctcctttcatcctccacatgtcacaaatacaatcccttgtatcttatctcgacctaccttttggattttccttgcatcccacctttattttctttcttaaaaaatattgtttttaattggtttcccagatcattactaaatttaaagcaactatgcatagtattgaatatttcgacttttccaaaagtaaattcggtctcatcaaaaagtgcatcctagaaaaagaacaggtagacacacggttatttctccatacaagtttgatgagtaaatggaaatttaaactttcgagttaaaatcacacgctattcgagagatgaagctaaattaatcgtgatacgcagtagagagatgtgcaagtaatacagattttttaaaaatgtacatacatgccaagctaccagcttaaacaactgtagggagcaactttgagccttggaataacaatgtcacctaagtgccattagctaatgtacaacggttctcgcacatacaaatgacagcactgatctttacttgggttgaaaataaaaacaggagaagtaatagagaccatgaaccaaaaggaaaatataaatattcagctgttggaagaactgaaataggcacaattaaaattaattacttttgcctttatgaacacataaaacatgcaaattactgaacagaactgcaaactaaattcatatctgccatgtaacatacagaaagccactgtttctttgacaaaattcgcaaaaaataatatactgcaacctgaattaagagaacctttacaatcaaccatatcataaaataatcagcagagtcaaaattatcacaaactaattagtaataacgtcgtcaacaaaaatcctcaaacagcacttgccatgccaacagctaactAaaaaaaaactcaaattttgtccAaaaaacaatctaatcctattatctcaaaagtatacagcctcattcccctaatccactaattgtgaatttcagtcatgaaacaactaacacaactttgcaaaaagcaacagaatgcaaaactacctaccaaacaactaccaaccacacaagaagttcaaaaggtatgatatcccaaactccaagaatggctcgagctatcataatctttttacctcacaggctcacccaacttgaacgaataggagccccacatttctcagggtaattatctgcactaatcgtatgcccatgcagcttcatttgtaaaggccaagaaaagaaaaggaagaggcctagtagtttcacctaaacataagagatgccctttagccccacaatgcttaccgaaacctcaaaaaataccactctaatcaaagttctcaacggcaaccaaacgcacatgcagataaagcataacatattaagcgcaaccgatacactccagagcaaagccactaaccagaaaagcagaaatcgcccacaatccgggccaaaattagcccaaatgttcatgctcgcgaacccccttctcctatgacctcacggtcgcaccctgcccccttccataaaattaccaacgtaattcgtcacggggcactcaaatcgcacgccaccgcccccccccccccccccccgcgaatccaattccttcccctccactcaccccgacacaacgcaatcggggccccgaacgaatcaatcgaaacccAaaaaaaaaacaatccaagcaggtacggggaaattcccacagatcgtcacctcggggggagcacgcgatccgatcggcggaagcggggtgggtgggtggagtggaggatccgccgccagccgcgtcgtggtggtcggggagcggagcggagctatagcggcctcgcctcgcctcgcctctcggggaatcgcgcgggaaggtggaggtggatgggtgggtggagcgatcgcccgccgcgacgggacgagctcgcggggggcgatcggcgggtggggggtggaggtggaggaaggggatcgggggagaggggaggagccggcacggggagagaaggggaagcttatttataagcacggcaagcttttctttgcctttttttagagagagaatgaagaggagggagaggtagccggtaggaggagaggagagaagcaag
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| CDS seq | ataataattggcgttatggcatatagaaatacggtatgcgctccccaagtaattgatctagaaactgaacaagggcactctcatattcattctgaaagttttaatcgcactgggaatgattcatctgaccaaggtgcacaacatgctgtcagaggggtaggaaatgctacaaacattggtctatctgatatgcgaagttactatgatgcgggcatgaaccatccacatcaacctgttcataacttgcctccaaatttaggagtttattcaggttttgtcttcccatccagtatgtacaacccctgcatgtcgacaacatctatgaaccaatatgtttctcacactcagagcttcggattgccatcaaaccaagttgttctaggaagcatggatgaaggtagcagaaatgaaaatgctggtgaaagtgctagaggattcattaaaaggaaaaatgctgcagttgcaggaagttaccactgtgctaatggatttgcaagttcaagctcttctcatgcatctctgaatcctacacgtaggccatgggatccttcttttgagtcaaatgttttgcctaacactgcatcatataacccatcagagtaccatagccagaccagttggccatctatggaaggatcttccattcccagtaatggctttaatttgatgggtgctcacccagaatcagcacagcatggtaattatgcatttccaactagtcacatcagccagtgctttcaacctactagcaatacatggatttcccagtctgcaaatggtattgctgatggaataccacagtgggaatatgtcaatggaatgaataatgctccaggcagattttcccgttcaggtatgacagaaacagtgaatggaagcttccgtgaatatcagaatggcccttcaaccttatgtcgagggcctttaccctattttcatcagcatgctggcatgcatgctcataatctgcttgatcatacacaagtgcaagctccttaccaacaatgccacaataatcctgtcttacatggtgtaaatcattctggcaaccggttccatttgggtccaaggattccagttcttttctctaattctgaacgtacttttgggcctccacatcatccactcttggcaaatccagtgaaccacagaaatatacgaatcctgccacctgagcatgctacaataatggatttttcaagattgtatgaagtgtcaaatgttgtagatgagcatagagatatgcggctagatatagacagcatgacatatgaggagcttttagcattagaagagcagattggagatgtaaatactggtctggcaaaaagctacattgtagagaaattgaagactagcttatttgtgccaggatcatcctgcatgtctaataagtcttctgaatcttccatggagaatgatgcttgcataatatgccaggaagagtatcaggttaaagaatgcattggaacccttgactgtggccacaggtaccacgaagattgcataaaacaatggttgatggtaaagaatttatgccccatctgcaagacgacagctttgtcaaccggaagaagtggataa
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| Protein seq | IIIGVMAYRNTVCAPQVIDLETEQGHSHIHSESFNRTGNDSSDQGAQHAVRGVGNATNIGLSDMRSYYDAGMNHPHQPVHNLPPNLGVYSGFVFPSSMYNPCMSTTSMNQYVSHTQSFGLPSNQVVLGSMDEGSRNENAGESARGFIKRKNAAVAGSYHCANGFASSSSSHASLNPTRRPWDPSFESNVLPNTASYNPSEYHSQTSWPSMEGSSIPSNGFNLMGAHPESAQHGNYAFPTSHISQCFQPTSNTWISQSANGIADGIPQWEYVNGMNNAPGRFSRSGMTETVNGSFREYQNGPSTLCRGPLPYFHQHAGMHAHNLLDHTQVQAPYQQCHNNPVLHGVNHSGNRFHLGPRIPVLFSNSERTFGPPHHPLLANPVNHRNIRILPPEHATIMDFSRLYEVSNVVDEHRDMRLDIDSMTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCMSNKSSESSMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPICKTTALSTGRSG |
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| Function | Probable E3 ubiquitin-protein ligase ZFP1 [UniProtKB/Swiss-Prot:Q5QLR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0027480 | OsLaMu_01g0027480.03 | Chr01 | 28726006 | 28735128 | - | NAM | ||
| CDS seq | atggcatatagaaatacggtatgcgctccccaagtaattgatctagaaactgaacaagggcactctcatattcattctgaaagttttaatcgcactgggaatgattcatctgaccaaggtgcacaacatgctgtcagaggggtaggaaatgctacaaacattggtctatctgatatgcgaagttactatgatgcgggcatgaaccatccacatcaacctgttcataacttgcctccaaatttaggagtttattcaggttttgtcttcccatccagtatgtacaacccctgcatgtcgacaacatctatgaaccaatatgtttctcacactcagagcttcggattgccatcaaaccaagttgttctaggaagcatggatgaaggtagcagaaatgaaaatgctggtgaaagtgctagaggattcattaaaaggaaaaatgctgcagttgcaggaagttaccactgtgctaatggatttgcaagttcaagctcttctcatgcatctctgaatcctacacgtaggccatgggatccttcttttgagtcaaatgttttgcctaacactgcatcatataacccatcagagtaccatagccagaccagttggccatctatggaaggatcttccattcccagtaatggctttaatttgatgggtgctcacccagaatcagcacagcatggtaattatgcatttccaactagtcacatcagccagtgctttcaacctactagcaatacatggatttcccagtctgcaaatggtattgctgatggaataccacagtgggaatatgtcaatggaatgaataatgctccaggcagattttcccgttcaggtatgacagaaacagtgaatggaagcttccgtgaatatcagaatggcccttcaaccttatgtcgagggcctttaccctattttcatcagcatgctggcatgcatgctcataatctgcttgatcatacacaagtgcaagctccttaccaacaatgccacaataatcctgtcttacatggtgtaaatcattctggcaaccggttccatttgggtccaaggattccagttcttttctctaattctgaacgtacttttgggcctccacatcatccactcttggcaaatccagtgaaccacagaaatatacgaatcctgccacctgagcatgctacaataatggatttttcaagattgtatgaagtgtcaaatgttgtagatgagcatagagatatgcggctagatatagacagcatgacatatgaggagcttttagcattagaagagcagattggagatgtaaatactggtctggcaaaaagctacattgtagagaaattgaagactagcttatttgtgccaggatcatcctgcatgtctaataagtcttctgaatcttccatggagaatgatgcttgcataatatgccaggaagagtatcaggttaaagaatgcattggaacccttgactgtggccacaggtaccacgaagattgcataaaacaatggttgatggtaaagaatttatgccccatctgcaagacgacagctttgtcaaccggaagaagtggataa
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| Protein seq | MAYRNTVCAPQVIDLETEQGHSHIHSESFNRTGNDSSDQGAQHAVRGVGNATNIGLSDMRSYYDAGMNHPHQPVHNLPPNLGVYSGFVFPSSMYNPCMSTTSMNQYVSHTQSFGLPSNQVVLGSMDEGSRNENAGESARGFIKRKNAAVAGSYHCANGFASSSSSHASLNPTRRPWDPSFESNVLPNTASYNPSEYHSQTSWPSMEGSSIPSNGFNLMGAHPESAQHGNYAFPTSHISQCFQPTSNTWISQSANGIADGIPQWEYVNGMNNAPGRFSRSGMTETVNGSFREYQNGPSTLCRGPLPYFHQHAGMHAHNLLDHTQVQAPYQQCHNNPVLHGVNHSGNRFHLGPRIPVLFSNSERTFGPPHHPLLANPVNHRNIRILPPEHATIMDFSRLYEVSNVVDEHRDMRLDIDSMTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCMSNKSSESSMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPICKTTALSTGRSG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0027480 | OsLaMu_01g0027480.02 | Chr01 | 28726006 | 28735128 | - | NAM | ||
| CDS seq | atgtacaacccctgcatgtcgacaacatctatgaaccaatatgtttctcacactcagagcttcggattgccatcaaaccaagttgttctaggaagcatggatgaaggtagcagaaatgaaaatgctggtgaaagtgctagaggattcattaaaaggaaaaatgctgcagttgcaggaagttaccactgtgctaatggatttgcaagttcaagctcttctcatgcatctctgaatcctacacgtaggccatgggatccttcttttgagtcaaatgttttgcctaacactgcatcatataacccatcagagtaccatagccagaccagttggccatctatggaaggatcttccattcccagtaatggctttaatttgatgggtgctcacccagaatcagcacagcatggtaattatgcatttccaactagtcacatcagccagtgctttcaacctactagcaatacatggatttcccagtctgcaaatggtattgctgatggaataccacagtgggaatatgtcaatggaatgaataatgctccaggcagattttcccgttcaggtatgacagaaacagtgaatggaagcttccgtgaatatcagaatggcccttcaaccttatgtcgagggcctttaccctattttcatcagcatgctggcatgcatgctcataatctgcttgatcatacacaagtgcaagctccttaccaacaatgccacaataatcctgtcttacatggtgtaaatcattctggcaaccggttccatttgggtccaaggattccagttcttttctctaattctgaacgtacttttgggcctccacatcatccactcttggcaaatccagtgaaccacagaaatatacgaatcctgccacctgagcatgctacaataatggatttttcaagattgtatgaagtgtcaaatgttgtagatgagcatagagatatgcggctagatatagacagcatgacatatgaggagcttttagcattagaagagcagattggagatgtaaatactggtctggcaaaaagctacattgtagagaaattgaagactagcttatttgtgccaggatcatcctgcatgtctaataagtcttctgaatcttccatggagaatgatgcttgcataatatgccaggaagagtatcaggttaaagaatgcattggaacccttgactgtggccacaggtaccacgaagattgcataaaacaatggttgatggtaaagaatttatgccccatctgcaagacgacagctttgtcaaccggaagaagtgga
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| Protein seq | MYNPCMSTTSMNQYVSHTQSFGLPSNQVVLGSMDEGSRNENAGESARGFIKRKNAAVAGSYHCANGFASSSSSHASLNPTRRPWDPSFESNVLPNTASYNPSEYHSQTSWPSMEGSSIPSNGFNLMGAHPESAQHGNYAFPTSHISQCFQPTSNTWISQSANGIADGIPQWEYVNGMNNAPGRFSRSGMTETVNGSFREYQNGPSTLCRGPLPYFHQHAGMHAHNLLDHTQVQAPYQQCHNNPVLHGVNHSGNRFHLGPRIPVLFSNSERTFGPPHHPLLANPVNHRNIRILPPEHATIMDFSRLYEVSNVVDEHRDMRLDIDSMTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCMSNKSSESSMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPICKTTALSTGRSG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0027480 | OsLaMu_01g0027480.01 | Chr01 | 28726006 | 28735128 | - | NAM | ||
| CDS seq | ataataattggcgttatggcatatagaaatacggtatgcgctccccaagtaattgatctagaaactgaacaagggcactctcatattcattctgaaagttttaatcgcactgggaatgattcatctgaccaaggtgcacaacatgctgtcagaggggtaggaaatgctacaaacattggtctatctgatatgcgaagttactatgatgcgggcatgaaccatccacatcaacctgttcataacttgcctccaaatttaggagtttattcaggttttgtcttcccatccagtatgtacaacccctgcatgtcgacaacatctatgaaccaatatgtttctcacactcagagcttcggattgccatcaaaccaagttgttctaggaagcatggatgaaggtagcagaaatgaaaatgctggtgaaagtgctagaggattcattaaaaggaaaaatgctgcagttgcaggaagttaccactgtgctaatggatttgcaagttcaagctcttctcatgcatctctgaatcctacacgtaggccatgggatccttcttttgagtcaaatgttttgcctaacactgcatcatataacccatcagagtaccatagccagaccagttggccatctatggaaggatcttccattcccagtaatggctttaatttgatgggtgctcacccagaatcagcacagcatggtaattatgcatttccaactagtcacatcagccagtgctttcaacctactagcaatacatggatttcccagtctgcaaatggtattgctgatggaataccacagtgggaatatgtcaatggaatgaataatgctccaggcagattttcccgttcaggtatgacagaaacagtgaatggaagcttccgtgaatatcagaatggcccttcaaccttatgtcgagggcctttaccctattttcatcagcatgctggcatgcatgctcataatctgcttgatcatacacaagtgcaagctccttaccaacaatgccacaataatcctgtcttacatggtgtaaatcattctggcaaccggttccatttgggtccaaggattccagttcttttctctaattctgaacgtacttttgggcctccacatcatccactcttggcaaatccagtgaaccacagaaatatacgaatcctgccacctgagcatgctacaataatggatttttcaagattgtatgaagtgtcaaatgttgtagatgagcatagagatatgcggctagatatagacagcatgacatatgaggagcttttagcattagaagagcagattggagatgtaaatactggtctggcaaaaagctacattgtagagaaattgaagactagcttatttgtgccaggatcatcctgcatgtctaataagtcttctgaatcttccatggagaatgatgcttgcataatatgccaggaagagtatcaggttaaagaatgcattggaacccttgactgtggccacaggtaccacgaagattgcataaaacaatggttgatggtaaagaatttatgccccatctgcaagacgacagctttgtcaaccggaagaagtggataa
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| Protein seq | IIIGVMAYRNTVCAPQVIDLETEQGHSHIHSESFNRTGNDSSDQGAQHAVRGVGNATNIGLSDMRSYYDAGMNHPHQPVHNLPPNLGVYSGFVFPSSMYNPCMSTTSMNQYVSHTQSFGLPSNQVVLGSMDEGSRNENAGESARGFIKRKNAAVAGSYHCANGFASSSSSHASLNPTRRPWDPSFESNVLPNTASYNPSEYHSQTSWPSMEGSSIPSNGFNLMGAHPESAQHGNYAFPTSHISQCFQPTSNTWISQSANGIADGIPQWEYVNGMNNAPGRFSRSGMTETVNGSFREYQNGPSTLCRGPLPYFHQHAGMHAHNLLDHTQVQAPYQQCHNNPVLHGVNHSGNRFHLGPRIPVLFSNSERTFGPPHHPLLANPVNHRNIRILPPEHATIMDFSRLYEVSNVVDEHRDMRLDIDSMTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCMSNKSSESSMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPICKTTALSTGRSG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0027480 | OsLaMu_01g0027480.04 | Chr01 | 28726046 | 28729458 | - | IsoSeq | ||
| CDS seq | atggaagcttccgtgaatatcagaatggcccttcaaccttatgtcgagggcctttaccctattttcatcagcatgctggcatgcatgctcataatctgcttgatcatacacaagtgcaagctccttaccaacaatgccacaataatcctgtcttacatg |
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| Protein seq | MEASVNIRMALQPYVEGLYPIFISMLACMLIICLIIHKCKLLTNNATIILSYM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 28729140 | 28729348 | - | OsLaMu_01g0027480.04 | OsLaMu_01g0027480.03,OsLaMu_01g0027480.04,OsLaMu_01g0027480.02,OsLaMu_01g0027480.01 | All |
| RI | Chr01 | 28729348 | 28730249 | - | OsLaMu_01g0027480.03 | OsLaMu_01g0027480.02,OsLaMu_01g0027480.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.874984 | 10.998344 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0667700 | RBH | 3.339944 | 7.125320 | 16.496805 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47740 | RBH | 2.817736 | 2.940795 | 3.962439 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0667700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028440 | RBH | 1.512295 | 30.270245 | 21.425304 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027970 | RBH | 0.648473 | 20.271870 | 16.807198 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028410 | RBH | 2.671286 | 18.164274 | 52.773811 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027630 | RBH | 0.624854 | 0.657630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027410 | RBH | 20.049324 | 25.192873 | 43.053322 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0455400 | RBH | 10.0486745 | 33.4465905 | 16.7633985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027110 | RBH | 1.121605 | 1.672976 | 14.083153 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0444300 | RBH | 10.098259 | 37.6973 | 15.251965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027360 | RBH | 0.933973 | 0.641271 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027280 | RBH | 2.948056 | 17.561445 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027600 | RBH | 27.984905 | 33.122116 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027670 | RBH | 2.558940 | 2.237214 | 3.629957 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026770 | RBH | 0.500465 | 2.875798 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027870 | RBH | 1.374481 | 4.655809 | 9.072511 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027610 | RBH | 3.169762 | 33.613079 | 32.292892 |
