Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0026600 | OGI:01081200 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:27954758-27958331 | ||||||||
| Gene Symbol | OsFbox032, OsFbox32, Os_F0271 | ||||||||||
| DNA seq | aaaaaaaaaaaaaaaaactattgcgttacgtccaactcccccggcgacggtggaagcgggagcagcccgacgtcctcgtccgactccccggcgacggtggaagcgggagcagcagcagcccggcgttgcttccggcggcattacctcctcgtcctcgtccgactccctgccgagatcccggcctttccgtcccgaccgcaccggcggcggcggcggagcatcgggccccttcggcttcagatccggcggacgaggtcgcggtcgaggggatctactgcggcggtggggtcgagcgagggaccggcggccgcgacgggcatcgaccactgggagttcgcctgcagcttgagcaggaccttgtcctgcgccacgtggaagagcgctcccacctccgccccgtcgccgccgccgctcatcgtggtgggtaggggattcactgatttgctgcactctgtttgctcgggggatcgagagggataggaggaagaggagtggagaggaagaaggtagaagatgagggacaatttggtccataaagatagaagataaaaggaatttcgtcgaagtaaagccctcgcaccaacttagccatcgtcgccttcccgtaggccggccggccggcgaccaccgccttccgaaaccgatggctgcagagacgcgtcctagccgctaccgtcggcttcggaaggcctcggatctctctaccgccaccaccgcttccccactctccaaacgggtatgccctccgtccctctttagtccttgaaatttgtatcttgttcactatctattcgtagaaatttccacgatttatcatatcagacctcattagaagtaattatatccgagtaaattaattctcaacattctggatcaatttcactgcagtgcagatagtttttctattttgttttggattggccgtcccaccaaactctggaatacagcactcttgttgtgaacagagtaataactgcaattaaagatgttcagttttagctgcaggactgttagtttagtatctcgattatagttggtcaatttaggactactgttgtcattaccttgttcgtaccatcagtaataattttagatggaagtaatatgggatttgccttgaacttaagctttgcaataatgtactagcccactaggttttgtgcatctcacaatgctgagactggaacaattttactttggattgaagaccagtttttctattttactttggattggccgtcccaccaaactactgctgttgtgaacagagtaatagctgtaattaaagatgttcagttttagctgaaggactgttagtttagtatctcgatttgttgttactgttggtcgatttaggactactcttgtcgttaccttgttcataccatcggtaataactttaggtggaagtaatatgggatttgccttgaacttaagctttgcaataatgtactagccaccactaggctttgtgcatctcacaatgctgatgctggaacaatttcttttatcttaataataaatataaataataatatgatattgaagtgttaatttgtggtcttgataattattttgtaaactaagtggttcactgactacaattccatgtccttcaccaactagatttgtatgggcaagaaatgcaccagttatgaggacaggatcagcagcttacctgaagagatactactcatgatccttggcaagctagacacacggacgacagtaacaaccaccatcctttcaaagagatggcgtgatcttcctcgatgtttgcccacatcctataaccttgctgtcgatgacatcctcccaccacggtatcaccgcctcaaacgccttaacatggaggctaaggcggcctatgaaacagagaagattgtacacaaactgaccgacatctatgccatcaaggctcggcatgagcgttggatgaccactatcagaccactcacggccatcctagaacgctacgagcgccgggccatgagacgctatatcaagcaggtgaatgcatttcttctagctccaaagaatgtgcgtcaacgctggcctgtccagaagctgaggctccaaacgctagggcgttggcatgagaatattgatgaatggatcaccacagccattgccaagtggggtgtcgaggattttgagcttgttgtcgatggcttttgcctgggctatgacctcaagcagctggatacataccggagcttgcggctggagcggcttgcgttgtccaattgcgaggctgtttgtgcatggaactgcttgacagtaaagaggctcaccaaactctcattgagtgaaggttcatttatgggattgctcaatgatatccttgcaaactgcgtgcagctaacagatttcagggtcgcattttcaagttattaccgagccaaagtccgtatctatgccccatcatcgaaattaaagaatctgcaagtggacaggtgcaactttgggaaaatctatctgatatgtctgccttgtcttgaaacttttgtttgccgcggtcgcccgaccaagttatcctatggtgaggtgcctcagctcaggcatgtgaggttggactacattcaaactgaagataacgacatagatgatgaatctggtactaagaggacatatccaccgagcaaattcttcaaaaagatcccaaaactagattcccttgttcttcagttcaaagggacacaggtgagtaatggtatcttatatacaaactaattgtgtataaacattgcattgcctttaaaaaaaccactgtgcattcatgtatgcagatgtggatcgaaccatttgttgttctcagtgagttcagtcagctcaagaagctcttcatcgcaaatgtcccagtgaactgggatatactgtggattctcctactgctcgatgcaacgccagccttggagtcattacatgttcatgtatgttgtttcctgaccactttacttactgaaaacgcgtgcacatggatgtttggaaaaataattgcaaaccaaattgttctgaaacctggaatgcagattgacaacaactcagaagacagaactgcaggtgatctctgcgccagcctcgacgtcggtgtgcagcaggatcgataccgtcacctgaaggagctcgtcgtggccggcttcgacggactgggctggcaagctggctttgtcaggctgataatgaagaggtcgccgttgctgagacgcgttcacctgcttgacggggaggtcagggatgacgagggggagctgggggatctgcagatcgtcccacgccaccgggagtggcacgagtgtgagcgagctgaggtgctcgatgacctcaccactgggtttcgctggcctcctcaaataattctggaataagcgtgtcctttcagttaacttgtttagattaggaaaataataataatatgtgtgccttgtgactttgcttgacgatgcaaatgacgcagagctgaagtgctccggttccatgtctgtccctttacaaaaccgtgtcttatagtagacattttggaagaaccagtgcggttgttgtaccagtttgttttgtttgaacactcaggtgt
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| CDS seq | atggctgcagagacgcgtcctagccgctaccgtcggcttcggaaggcctcggatctctctaccgccaccaccgcttccccactctccaaacggatttgtatgggcaagaaatgcaccagttatgaggacaggatcagcagcttacctgaagagatactactcatgatccttggcaagctagacacacggacgacagtaacaaccaccatcctttcaaagagatggcgtgatcttcctcgatgtttgcccacatcctataaccttgctgtcgatgacatcctcccaccacggtatcaccgcctcaaacgccttaacatggaggctaaggcggcctatgaaacagagaagattgtacacaaactgaccgacatctatgccatcaaggctcggcatgagcgttggatgaccactatcagaccactcacggccatcctagaacgctacgagcgccgggccatgagacgctatatcaagcaggtgaatgcatttcttctagctccaaagaatgtgcgtcaacgctggcctgtccagaagctgaggctccaaacgctagggcgttggcatgagaatattgatgaatggatcaccacagccattgccaagtggggtgtcgaggattttgagcttgttgtcgatggcttttgcctgggctatgacctcaagcagctggatacataccggagcttgcggctggagcggcttgcgttgtccaattgcgaggctgtttgtgcatggaactgcttgacagtaaagaggctcaccaaactctcattgagtgaaggttcatttatgggattgctcaatgatatccttgcaaactgcgtgcagctaacagatttcagggtcgcattttcaagttattaccgagccaaagtccgtatctatgccccatcatcgaaattaaagaatctgcaagtggacaggtgcaactttgggaaaatctatctgatatgtctgccttgtcttgaaacttttgtttgccgcggtcgcccgaccaagttatcctatggtgaggtgcctcagctcaggcatgtgaggttggactacattcaaactgaagataacgacatagatgatgaatctggtactaagaggacatatccaccgagcaaattcttcaaaaagatcccaaaactagattcccttgttcttcagttcaaagggacacagatgtggatcgaaccatttgttgttctcagtgagttcagtcagctcaagaagctcttcatcgcaaatgtcccagtgaactgggatatactgtggattctcctactgctcgatgcaacgccagccttggagtcattacatgttcatattgacaacaactcagaagacagaactgcaggtgatctctgcgccagcctcgacgtcggtgtgcagcaggatcgataccgtcacctgaaggagctcgtcgtggccggcttcgacggactgggctggcaagctggctttgtcaggctgataatgaagaggtcgccgttgctgagacgcgttcacctgcttgacggggaggtcagggatgacgagggggagctgggggatctgcagatcgtcccacgccaccgggagtggcacgagtgtgagcgagctgaggtgctcgatgacctcaccactgggtttcgctggcctcctcaaataattctggaataa
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| Protein seq | MAAETRPSRYRRLRKASDLSTATTASPLSKRICMGKKCTSYEDRISSLPEEILLMILGKLDTRTTVTTTILSKRWRDLPRCLPTSYNLAVDDILPPRYHRLKRLNMEAKAAYETEKIVHKLTDIYAIKARHERWMTTIRPLTAILERYERRAMRRYIKQVNAFLLAPKNVRQRWPVQKLRLQTLGRWHENIDEWITTAIAKWGVEDFELVVDGFCLGYDLKQLDTYRSLRLERLALSNCEAVCAWNCLTVKRLTKLSLSEGSFMGLLNDILANCVQLTDFRVAFSSYYRAKVRIYAPSSKLKNLQVDRCNFGKIYLICLPCLETFVCRGRPTKLSYGEVPQLRHVRLDYIQTEDNDIDDESGTKRTYPPSKFFKKIPKLDSLVLQFKGTQMWIEPFVVLSEFSQLKKLFIANVPVNWDILWILLLLDATPALESLHVHIDNNSEDRTAGDLCASLDVGVQQDRYRHLKELVVAGFDGLGWQAGFVRLIMKRSPLLRRVHLLDGEVRDDEGELGDLQIVPRHREWHECERAEVLDDLTTGFRWPPQIILE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0026600 | OsLaMu_01g0026600.01 | Chr01 | 27954758 | 27958331 | + | NAM | ||
| CDS seq | atggctgcagagacgcgtcctagccgctaccgtcggcttcggaaggcctcggatctctctaccgccaccaccgcttccccactctccaaacggatttgtatgggcaagaaatgcaccagttatgaggacaggatcagcagcttacctgaagagatactactcatgatccttggcaagctagacacacggacgacagtaacaaccaccatcctttcaaagagatggcgtgatcttcctcgatgtttgcccacatcctataaccttgctgtcgatgacatcctcccaccacggtatcaccgcctcaaacgccttaacatggaggctaaggcggcctatgaaacagagaagattgtacacaaactgaccgacatctatgccatcaaggctcggcatgagcgttggatgaccactatcagaccactcacggccatcctagaacgctacgagcgccgggccatgagacgctatatcaagcaggtgaatgcatttcttctagctccaaagaatgtgcgtcaacgctggcctgtccagaagctgaggctccaaacgctagggcgttggcatgagaatattgatgaatggatcaccacagccattgccaagtggggtgtcgaggattttgagcttgttgtcgatggcttttgcctgggctatgacctcaagcagctggatacataccggagcttgcggctggagcggcttgcgttgtccaattgcgaggctgtttgtgcatggaactgcttgacagtaaagaggctcaccaaactctcattgagtgaaggttcatttatgggattgctcaatgatatccttgcaaactgcgtgcagctaacagatttcagggtcgcattttcaagttattaccgagccaaagtccgtatctatgccccatcatcgaaattaaagaatctgcaagtggacaggtgcaactttgggaaaatctatctgatatgtctgccttgtcttgaaacttttgtttgccgcggtcgcccgaccaagttatcctatggtgaggtgcctcagctcaggcatgtgaggttggactacattcaaactgaagataacgacatagatgatgaatctggtactaagaggacatatccaccgagcaaattcttcaaaaagatcccaaaactagattcccttgttcttcagttcaaagggacacagatgtggatcgaaccatttgttgttctcagtgagttcagtcagctcaagaagctcttcatcgcaaatgtcccagtgaactgggatatactgtggattctcctactgctcgatgcaacgccagccttggagtcattacatgttcatattgacaacaactcagaagacagaactgcaggtgatctctgcgccagcctcgacgtcggtgtgcagcaggatcgataccgtcacctgaaggagctcgtcgtggccggcttcgacggactgggctggcaagctggctttgtcaggctgataatgaagaggtcgccgttgctgagacgcgttcacctgcttgacggggaggtcagggatgacgagggggagctgggggatctgcagatcgtcccacgccaccgggagtggcacgagtgtgagcgagctgaggtgctcgatgacctcaccactgggtttcgctggcctcctcaaataattctggaataa
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| Protein seq | MAAETRPSRYRRLRKASDLSTATTASPLSKRICMGKKCTSYEDRISSLPEEILLMILGKLDTRTTVTTTILSKRWRDLPRCLPTSYNLAVDDILPPRYHRLKRLNMEAKAAYETEKIVHKLTDIYAIKARHERWMTTIRPLTAILERYERRAMRRYIKQVNAFLLAPKNVRQRWPVQKLRLQTLGRWHENIDEWITTAIAKWGVEDFELVVDGFCLGYDLKQLDTYRSLRLERLALSNCEAVCAWNCLTVKRLTKLSLSEGSFMGLLNDILANCVQLTDFRVAFSSYYRAKVRIYAPSSKLKNLQVDRCNFGKIYLICLPCLETFVCRGRPTKLSYGEVPQLRHVRLDYIQTEDNDIDDESGTKRTYPPSKFFKKIPKLDSLVLQFKGTQMWIEPFVVLSEFSQLKKLFIANVPVNWDILWILLLLDATPALESLHVHIDNNSEDRTAGDLCASLDVGVQQDRYRHLKELVVAGFDGLGWQAGFVRLIMKRSPLLRRVHLLDGEVRDDEGELGDLQIVPRHREWHECERAEVLDDLTTGFRWPPQIILE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.319778 | 0.832336 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0653700 | RBH | 1.923604 | 1.244238 | 2.983809 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46500 | RBH | 0.884855 | 0.948452 | 0.723366 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0653700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027580 | RBH | 0.540633 | 7.744028 | 8.531299 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027090 | RBH | 0.101634 | 0.838119 | 2.134169 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027540 | RBH | 1.386803 | 7.755966 | 5.625279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026790 | RBH | 0.182097 | 0.161583 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026530 | RBH | 4.548293 | 8.118160 | 11.582552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0443500 | RBH | 7.030205 | 9.6507155 | 28.3882625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026220 | RBH | 0.464963 | 0.503701 | 0.936234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0367800 | SBH | 0.0339995 | 0.011235 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026470 | RBH | 0.135122 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026390 | RBH | 0.510443 | 6.860427 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026720 | RBH | 2.828008 | 10.098467 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026780 | RBH | 0.581400 | 0.377122 | 1.271359 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026990 | RBH | 0.402394 | 1.054658 | 2.197161 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026730 | RBH | 0.187919 | 2.680037 | 4.204907 |
