Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0025160 | OGI:01077500 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:26640493-26645299 | ||||||||
| Gene Symbol | SCP4, OsSCP4 | ||||||||||
| DNA seq | atggcgtcgtttctttcccgcgccgccgccgtctccctcctcgccatcgtcctcgtcctgactgccgccacgtccacctcccctgcggccgcggccgctcggttcccggaggaggcgcgccccacgaggtcggggtacctcaacgtcacgtccaccaactcactctacttcgccttctacgaggccaccgacccggtcaccacgcagccggccgccgtgccgctcctcgtttggctccagggcggccccggctgctcctccctcatcggcagcttcgccgagctcggcccctacctcctcctcgactccacctccgccctcgcccgcaacgacaaccggtggaaccgccgcttcggcgtgatcttcatcgacaacccgctcggcgccggtttcagcgcgcctgcctccggcgacgacatcccgaccgacgagcgcaccatcgccgcgcacctcctcgcggccctgcagtcgttcatggcgctcgatccggccttccgcgcgcgcccgctgttcctcaccggggagagctacgccggcaagtacatccccgcggccgcgtcgcacatcctcgacgccaacgccaagctcacggacgaccgtagggtgaacctccagggcatcgccatcggcaacggcatgacgcacccggtggcgcaggtgaccgtgcacgccgaccaggcctacttcgccgggctgatcaacgccgagcagaaggccaaggtcgaagaaatgcaggacaagacggtaagcctgatcaaatccaagaagtgggccgcggcgaggagggagaggaacaggatcatagcgttcctcaagaacgccaccggcgtcgctacgccgttcaactacgcgcgggagaaggggtacccgacgcggccgctccgggacttcctcaacaccggcgaggcgaaggcggcgctgggcgcgaggagcgacgtggagtgggcgcgctgcagcgaggccgtgtcggcggcgctcgccgacgacatcatgaggagcgccaggggcgacgtggaggccgtcttcctggcgccggatggcgtccgggtgctgctgttccagggcgtgttcgatctgcacagcgggccggcgtccgtggaggcgtgggtgagggagctggcgtggcctggcctgggcgcgttcctcgccgcggagcgcgccgtgtggcggctcggggacgagcagctcgccgggtacgtgcagaggtcgggggcgctcgcgaacgcggtcatcgtcggggccgggcacatggcggccggcgacaaccggccggcggcgcaggcgatgatcgagggatgggtgttgcagacggggccgttcgacggaagcggtcaacgagtcgttggctccttattctgacttacgggtgggcttgattttgactgaaataaatgctttttggtactcgtacactactctcttcgataagctattttgactaacaatatctataaaagtaagatatttcaaataaaaagagttgtattctatgatagcttgtttaacaataaatctactagtaatatcaattttatataattgatttttttatttttttatattaatagttaaagtttaaaatgtttgacttgacactatgctcaaaataacggatagagtactagattacatcgattgatttatcattttgaataccaagatagtttctttgagtaatatttattaATatatatatttataaaaacttaataaaaatataattatgtgaaagtattttcataacaaatatataaattttattttcacatattaaatcttaatatttttaatttattaataagataagatatcaaaatttgaccacaagcattctaggatatctatccttttgataatggaggtagaacctccctgacataggttgcatgatctattttgtattaataaaaatgttatacgtatgtacatgtgtggatgtcatgtaaatacaaaacttaataccttcacgtatatacgtatatgtataaactttatatcttaactaattaaaagattcgtatttttccaatcgttacctccttttcacccgtgattcgtccgtcgttcctcataggagtcgagtccgattccctgAaaaaaatcccccatcttgatccccaaataaatcaaacaatgagacaaccaaaaacactcataggattcgagtccgattccttaaaaaaaaatcccccaacttgatccccaaatgaatcaaacaatgagacaaccaaaaacaacataaagagcaattttaatccgagtagagctcatgaacttgatcccaatgtccgattccatgaaaaagaaacaaactcgggcgaaaaaaaaggcgaccggatctgccctcggccgccgccgaatccaccagcggccgtcgccgactgccgctggatcgccctcagccgccgtcaccgccgccggatccactcgccgccgccaccgctgccgccggatccacccgacgccaccaccgccaccgaaggcagaagagaggcggcggccgtcaccgacgccaccaccaccgactgccgccggatccgcccttggccgccgccaccgctgccgccgccgccaccgccggatccacccatcggaagtagtggagggagccgccgtggccgctcacggtggggaaggccgcggacgccgctagcgaccagagaggacgggatccagtcaccggtggaggatccgcgcaagagggaagcaggggagacgacgggatacgtgtgggaggggaagaagtcgtcggttccctccccgcccacctgcctcggtcgcccgtctgccgcctcgctttgctccaaccgtggctctctcgccggctgccacaccgctgcgttgcagtcttacagagagggagaacagaaacgatggctgggagagaaagaacgagagagtgatacaaggtgagaggataatgatctccatccagtccaccgcccaccacacaattctcgcctcaagaaacctgcacgcggcatctgactcctagcagtttttcatatttacccctaatagtatattttatcatatacttcagtaaatacaaaatatttctaaaaatacccccagattagtactcacacgttgatatccaggaccttggcagttttaattttacaagactggactgatgtacaaactaccttttatagctctgcatattgagctgaccatataagtcattaacctcaaaaaatatatatgtgttatatattttgtgattaacatattttgtatataccaataaaaaaaatacataaggcttccaggtaTtttttttgaccgtcctttttttacgatttttccaccgtttttttgtcgcttaagtcgtttcttttacttttgcaagcggaacggtgtgcgcaaccctagtgtgtatgcgtgtcgatctaggttgaagacggcagccccggataggattgggagtatcagctcccttatggtacatggaaagactgttttcaggaggttgaagacggcaatctatgcgagttgagcctgcagttccacttgtgggctgcaggccgagcggaggaaggtgacggactaggcggggctgaaaagaaatgatttaatgggcttttgaattaaaaccaaggaagatgtaaaatttatcgcaatcaattttacccagtgcaatgcacgtgcattttactacaaaagttttattttagatcacatgttaagctatgcTtttactttggaccggacaacattttctttgtttgcatcttgaaccaccttcgctgttcatctctttcatccccacccaaaacccggctagctgggaactagaggggacgcacacgctactggtgctgagtggctcgagctcagacattgcgtgagctccatccatgttgcaccatggtcaagcctggcttgctcggtttggttccgctccatcataagtggagccaattttcctatctcttcttataggtaccggtttattataaaaacatggggggagggaaatgaaatcttggggttagggttagggtttggctgtagatatttatataggttaggataaatctggactgtccattcgattggacggctccggcttaccctgctcgggccgccgaactattgggcctcgaaataggccaacaagtttgcgcaatcaaaggagaagttagaggacgtaaattagattttatttacgggctgggacagtaaaaggactgaaaatggcccatagagaaattgtggtttttatttacatttttatttaaataaatgatgtttgtgttataaattaagcttcaaaaattccaattaaaattcaaagagcgttattaatcatgattaattcaataaaaattaaatccaaccatatcatattatttcacggcctgtggtgggaaaatacacagctgctgtcggtgggagagaaggggcattgtttatgtccagaactatttcctataactcccatagaactgtaaaataactataatcattattttaacattagTtttttttttctgttgcaacgcactattgaataatattttgagaacggttaaaaatacattatttttagtttttttAttggacaaatatttttagttttaatacactgtatcgaagcacgggtattttgctagtacttataaatatatttataaagtttatacgtgtagcgacaacggattgatcacccgtatccggtcagctgcgcatcagcgcaggcgtatcttgtgcggtcagttgatgctggtagctatgcatgcacttgcatctgatccttgcgtgcaggtcaaaggggcctacaattcgaattgaatggtag
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| CDS seq | atggcgtcgtttctttcccgcgccgccgccgtctccctcctcgccatcgtcctcgtcctgactgccgccacgtccacctcccctgcggccgcggccgctcggttcccggaggaggcgcgccccacgaggtcggggtacctcaacgtcacgtccaccaactcactctacttcgccttctacgaggccaccgacccggtcaccacgcagccggccgccgtgccgctcctcgtttggctccagggcggccccggctgctcctccctcatcggcagcttcgccgagctcggcccctacctcctcctcgactccacctccgccctcgcccgcaacgacaaccggtggaaccgccgcttcggcgtgatcttcatcgacaacccgctcggcgccggtttcagcgcgcctgcctccggcgacgacatcccgaccgacgagcgcaccatcgccgcgcacctcctcgcggccctgcagtcgttcatggcgctcgatccggccttccgcgcgcgcccgctgttcctcaccggggagagctacgccggcaagtacatccccgcggccgcgtcgcacatcctcgacgccaacgccaagctcacggacgaccgtagggtgaacctccagggcatcgccatcggcaacggcatgacgcacccggtggcgcaggtgaccgtgcacgccgaccaggcctacttcgccgggctgatcaacgccgagcagaaggccaaggtcgaagaaatgcaggacaagacggtaagcctgatcaaatccaagaagtgggccgcggcgaggagggagaggaacaggatcatagcgttcctcaagaacgccaccggcgtcgctacgccgttcaactacgcgcgggagaaggggtacccgacgcggccgctccgggacttcctcaacaccggcgaggcgaaggcggcgctgggcgcgaggagcgacgtggagtgggcgcgctgcagcgaggccgtgtcggcggcgctcgccgacgacatcatgaggagcgccaggggcgacgtggaggccgtcttcctggcgccggatggcgtccgggtgctgctgttccagggcgtgttcgatctgcacagcgggccggcgtccgtggaggcgtgggtgagggagctggcgtggcctggcctgggcgcgttcctcgccgcggagcgcgccgtgtggcggctcggggacgagcagctcgccgggtcaaaggggcctacaattcgaattgaatggtag
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| Protein seq | MASFLSRAAAVSLLAIVLVLTAATSTSPAAAAARFPEEARPTRSGYLNVTSTNSLYFAFYEATDPVTTQPAAVPLLVWLQGGPGCSSLIGSFAELGPYLLLDSTSALARNDNRWNRRFGVIFIDNPLGAGFSAPASGDDIPTDERTIAAHLLAALQSFMALDPAFRARPLFLTGESYAGKYIPAAASHILDANAKLTDDRRVNLQGIAIGNGMTHPVAQVTVHADQAYFAGLINAEQKAKVEEMQDKTVSLIKSKKWAAARRERNRIIAFLKNATGVATPFNYAREKGYPTRPLRDFLNTGEAKAALGARSDVEWARCSEAVSAALADDIMRSARGDVEAVFLAPDGVRVLLFQGVFDLHSGPASVEAWVRELAWPGLGAFLAAERAVWRLGDEQLAGSKGPTIRIEW |
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| Function | Serine carboxypeptidase-like 50 [UniProtKB/Swiss-Prot:Q9M9Q6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0025160 | OsLaMu_01g0025160.01 | Chr01 | 26640493 | 26645299 | + | NAM | ||
| CDS seq | atggcgtcgtttctttcccgcgccgccgccgtctccctcctcgccatcgtcctcgtcctgactgccgccacgtccacctcccctgcggccgcggccgctcggttcccggaggaggcgcgccccacgaggtcggggtacctcaacgtcacgtccaccaactcactctacttcgccttctacgaggccaccgacccggtcaccacgcagccggccgccgtgccgctcctcgtttggctccagggcggccccggctgctcctccctcatcggcagcttcgccgagctcggcccctacctcctcctcgactccacctccgccctcgcccgcaacgacaaccggtggaaccgccgcttcggcgtgatcttcatcgacaacccgctcggcgccggtttcagcgcgcctgcctccggcgacgacatcccgaccgacgagcgcaccatcgccgcgcacctcctcgcggccctgcagtcgttcatggcgctcgatccggccttccgcgcgcgcccgctgttcctcaccggggagagctacgccggcaagtacatccccgcggccgcgtcgcacatcctcgacgccaacgccaagctcacggacgaccgtagggtgaacctccagggcatcgccatcggcaacggcatgacgcacccggtggcgcaggtgaccgtgcacgccgaccaggcctacttcgccgggctgatcaacgccgagcagaaggccaaggtcgaagaaatgcaggacaagacggtaagcctgatcaaatccaagaagtgggccgcggcgaggagggagaggaacaggatcatagcgttcctcaagaacgccaccggcgtcgctacgccgttcaactacgcgcgggagaaggggtacccgacgcggccgctccgggacttcctcaacaccggcgaggcgaaggcggcgctgggcgcgaggagcgacgtggagtgggcgcgctgcagcgaggccgtgtcggcggcgctcgccgacgacatcatgaggagcgccaggggcgacgtggaggccgtcttcctggcgccggatggcgtccgggtgctgctgttccagggcgtgttcgatctgcacagcgggccggcgtccgtggaggcgtgggtgagggagctggcgtggcctggcctgggcgcgttcctcgccgcggagcgcgccgtgtggcggctcggggacgagcagctcgccgggtcaaaggggcctacaattcgaattgaatggtag
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| Protein seq | MASFLSRAAAVSLLAIVLVLTAATSTSPAAAAARFPEEARPTRSGYLNVTSTNSLYFAFYEATDPVTTQPAAVPLLVWLQGGPGCSSLIGSFAELGPYLLLDSTSALARNDNRWNRRFGVIFIDNPLGAGFSAPASGDDIPTDERTIAAHLLAALQSFMALDPAFRARPLFLTGESYAGKYIPAAASHILDANAKLTDDRRVNLQGIAIGNGMTHPVAQVTVHADQAYFAGLINAEQKAKVEEMQDKTVSLIKSKKWAAARRERNRIIAFLKNATGVATPFNYAREKGYPTRPLRDFLNTGEAKAALGARSDVEWARCSEAVSAALADDIMRSARGDVEAVFLAPDGVRVLLFQGVFDLHSGPASVEAWVRELAWPGLGAFLAAERAVWRLGDEQLAGSKGPTIRIEW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.130130 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0629600 | RBH | 1.769821 | 1.703348 | 0.412098 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43890 | RBH | 1.104245 | 0.978922 | 0.074350 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0629600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026090 | RBH | 0.000000 | 0.000000 | 0.155045 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025720 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026050 | RBH | 0.508530 | 0.0 | 0.654091 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025380 | RBH | 0.082934 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025100 | RBH | 2.571496 | 0.342988 | 0.699613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0421900 | RBH | 1.29408 | 5.594252 | 2.1964515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024770 | RBH | 0.110732 | 0.0 | 0.135516 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0410600 | RBH | 1.481479 | 5.659169 | 2.2418545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025020 | RBH | 0.228348 | 4.455811 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025290 | RBH | 0.000000 | 0.0 | 0.140705 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028210 | RBH | 0.122319 | 0.642023 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025410 | RBH | 0.0 | 0.724881 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025180 | RBH | 0.000000 | 0.000000 | 0.000000 |
