Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0025120 | OGI:01013090 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:26615785-26617827 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgacgagatcgaaaccatggagattgtcgatggcgCttcaccgCcgttgcatccatggagcttgctgctctacgcgctcggcgcattggcggcgctgtggtgggcgtggcgggctctcgaccggttctggctccgcccgcggcggctgggccgggcgctgcggtcccagggcctccgcggcAccgactaccgcttcccgtccggcgacctgaaggagttcgcgcggctgctcgccgccgccctcgccgcgcccatgccgccgctgtcgcacgacgtcgCctcgcgagcgcttccgttcgaactcgccgccatcaagcagcacggtgcgtagtactggctctctccttttaatcagcagcttacacacacgcccctgcaaacgtgagagatcaaacggaagttgcatggaatgcaggcaatgtttgcgtgacTtggttcggcccggaggcgcgagtgatcgtgagtgatcctaaacttttccgagagattttagcgAacaagaacgggcggttcgggaagcagaagtccattcTttgggtccagaatttgttggcagatgggctgacgagccaccaaggcgagaaatgggtcgctcaccggaggataatgaaccacgccttccatctcgagaagctgaaggtgagacaccaccatcctgcacacacgacacaaccacaagtccataactgattttttttttttacatccTttctggctttgtcagtctagatgtctgtatttacttcttgaggatcgtaaaatttcttacagttaaaggattgcttgatgctttgtgcagaggatgttgccggcgtttgcagcatgttccagcgagctgataagcagatggcaggattctgtgggagctgatggtgcgcaggagatcgatgtctggccGgagttccagaatctcacgggggatgtcatctcccggtcggcgttcggcagcagcttcagtgaagggaggaggatcttccagttgcagtcagagcaggcacgaaacgttatgaagatggcaaaagctttgtatttcccaggttacaggtgattgactaatagcaaaattaaacccgaattaaagaggttaggtaTtacttgattacatctgagatgcgatttttttttgcttattgggcaggtttctgcctacagagctcaacagaaggacgaaagcaaacgcacgcgaggtcagagagcttctgaaaggcataatcaccaagagggagagcgcgatgaaggatggccatgcggttaacgatgatctgcttggattgctattggagaccaacatcaaggagagccaagaagctggaagctccaagccaaccatgaccacgaaggacatcatcgaggagctgaagctgctctactttgcaggatcggatacaaccgcggtgttgctcacatggacaatggtcctcctaagcatgcaccccaagtggcaggaccgtgccagggaggaggtgctgcgcgttttcggaaagaacagtccagatttcgagggcataaaccatctcaaagtcgtgagtgcaacatatataccaagatgaagaaaatgttcaggttctgtttttagttagttcccgttctaattagcgccagcttctctgtcacaggtgaccatgatattacacgaggttcttaggctgtatccaccgatcctgctgcttggccgagaggcatacgaagagaccgagctcggaggggtcacgtatccaccgggggtgacattcgcgttgccgatcgcgtgcatccaccacgatccagacgtgtGgggGAGAAGACGTCGGCGAGTTCAAGCCGGAGAGGTTCGCGGAGGGCGTCTCCAGGGCGTCCAAGGACTCACCGGCGTTGGTTCCCTTCAGTTGGGGGCCACGGATCTGTGTCGGCCAGAACTTCGCGTTGCTGGAGGCCAAGATGGCGCTGAGCATGATCCTGCAACGGTTCTCGTTCGGGCTGTCTCCGTCCTACACGCACGCACCGTTCCCAATCCCCACGCTCCAGCCACAGCATGGGGCACAGATTAAGCTTACTAAACTCTGA
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| CDS seq | atggagattgtcgatggcgCttcaccgCcgttgcatccatggagcttgctgctctacgcgctcggcgcattggcggcgctgtggtgggcgtggcgggctctcgaccggttctggctccgcccgcggcggctgggccgggcgctgcggtcccagggcctccgcggcAccgactaccgcttcccgtccggcgacctgaaggagttcgcgcggctgctcgccgccgccctcgccgcgcccatgccgccgctgtcgcacgacgtcgCctcgcgagcgcttccgttcgaactcgccgccatcaagcagcacggcaatgtttgcgtgacTtggttcggcccggaggcgcgagtgatcgtgagtgatcctaaacttttccgagagattttagcgAacaagaacgggcggttcgggaagcagaagtccattcTttgggtccagaatttgttggcagatgggctgacgagccaccaaggcgagaaatgggtcgctcaccggaggataatgaaccacgccttccatctcgagaagctgaagaggatgttgccggcgtttgcagcatgttccagcgagctgataagcagatggcaggattctgtgggagctgatggtgcgcaggagatcgatgtctggccGgagttccagaatctcacgggggatgtcatctcccggtcggcgttcggcagcagcttcagtgaagggaggaggatcttccagttgcagtcagagcaggcacgaaacgttatgaagatggcaaaagctttgtatttcccaggttacaggtttctgcctacagagctcaacagaaggacgaaagcaaacgcacgcgaggtcagagagcttctgaaaggcataatcaccaagagggagagcgcgatgaaggatggccatgcggttaacgatgatctgcttggattgctattggagaccaacatcaaggagagccaagaagctggaagctccaagccaaccatgaccacgaaggacatcatcgaggagctgaagctgctctactttgcaggatcggatacaaccgcggtgttgctcacatggacaatggtcctcctaagcatgcaccccaagtggcaggaccgtgccagggaggaggtgctgcgcgttttcggaaagaacagtccagatttcgagggcataaaccatctcaaagtcacgtgtGgggGAGAAGACGTCGGCGAGTTCAAGCCGGAGAGGTTCGCGGAGGGCGTCTCCAGGGCGTCCAAGGACTCACCGGCGTTGGTTCCCTTCAGTTGGGGGCCACGGATCTGTGTCGGCCAGAACTTCGCGTTGCTGGAGGCCAAGATGGCGCTGAGCATGATCCTGCAACGGTTCTCGTTCGGGCTGTCTCCGTCCTACACGCACGCACCGTTCCCAATCCCCACGCTCCAGCCACAGCATGGGGCACAGATTAAGCTTACTAAACTCTGA
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| Protein seq | MEIVDGASPPLHPWSLLLYALGALAALWWAWRALDRFWLRPRRLGRALRSQGLRGTDYRFPSGDLKEFARLLAAALAAPMPPLSHDVASRALPFELAAIKQHGNVCVTWFGPEARVIVSDPKLFREILANKNGRFGKQKSILWVQNLLADGLTSHQGEKWVAHRRIMNHAFHLEKLKRMLPAFAACSSELISRWQDSVGADGAQEIDVWPEFQNLTGDVISRSAFGSSFSEGRRIFQLQSEQARNVMKMAKALYFPGYRFLPTELNRRTKANAREVRELLKGIITKRESAMKDGHAVNDDLLGLLLETNIKESQEAGSSKPTMTTKDIIEELKLLYFAGSDTTAVLLTWTMVLLSMHPKWQDRAREEVLRVFGKNSPDFEGINHLKVTCGGEDVGEFKPERFAEGVSRASKDSPALVPFSWGPRICVGQNFALLEAKMALSMILQRFSFGLSPSYTHAPFPIPTLQPQHGAQIKLTKL |
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| Function | Cytochrome P450 CYP72A219 [UniProtKB/Swiss-Prot:H2DH21] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0025120 | OsLaMu_01g0025120.01 | Chr01 | 26615785 | 26617827 | + | NAM | ||
| CDS seq | atggagattgtcgatggcgCttcaccgCcgttgcatccatggagcttgctgctctacgcgctcggcgcattggcggcgctgtggtgggcgtggcgggctctcgaccggttctggctccgcccgcggcggctgggccgggcgctgcggtcccagggcctccgcggcAccgactaccgcttcccgtccggcgacctgaaggagttcgcgcggctgctcgccgccgccctcgccgcgcccatgccgccgctgtcgcacgacgtcgCctcgcgagcgcttccgttcgaactcgccgccatcaagcagcacggcaatgtttgcgtgacTtggttcggcccggaggcgcgagtgatcgtgagtgatcctaaacttttccgagagattttagcgAacaagaacgggcggttcgggaagcagaagtccattcTttgggtccagaatttgttggcagatgggctgacgagccaccaaggcgagaaatgggtcgctcaccggaggataatgaaccacgccttccatctcgagaagctgaagaggatgttgccggcgtttgcagcatgttccagcgagctgataagcagatggcaggattctgtgggagctgatggtgcgcaggagatcgatgtctggccGgagttccagaatctcacgggggatgtcatctcccggtcggcgttcggcagcagcttcagtgaagggaggaggatcttccagttgcagtcagagcaggcacgaaacgttatgaagatggcaaaagctttgtatttcccaggttacaggtttctgcctacagagctcaacagaaggacgaaagcaaacgcacgcgaggtcagagagcttctgaaaggcataatcaccaagagggagagcgcgatgaaggatggccatgcggttaacgatgatctgcttggattgctattggagaccaacatcaaggagagccaagaagctggaagctccaagccaaccatgaccacgaaggacatcatcgaggagctgaagctgctctactttgcaggatcggatacaaccgcggtgttgctcacatggacaatggtcctcctaagcatgcaccccaagtggcaggaccgtgccagggaggaggtgctgcgcgttttcggaaagaacagtccagatttcgagggcataaaccatctcaaagtcacgtgtGgggGAGAAGACGTCGGCGAGTTCAAGCCGGAGAGGTTCGCGGAGGGCGTCTCCAGGGCGTCCAAGGACTCACCGGCGTTGGTTCCCTTCAGTTGGGGGCCACGGATCTGTGTCGGCCAGAACTTCGCGTTGCTGGAGGCCAAGATGGCGCTGAGCATGATCCTGCAACGGTTCTCGTTCGGGCTGTCTCCGTCCTACACGCACGCACCGTTCCCAATCCCCACGCTCCAGCCACAGCATGGGGCACAGATTAAGCTTACTAAACTCTGA
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| Protein seq | MEIVDGASPPLHPWSLLLYALGALAALWWAWRALDRFWLRPRRLGRALRSQGLRGTDYRFPSGDLKEFARLLAAALAAPMPPLSHDVASRALPFELAAIKQHGNVCVTWFGPEARVIVSDPKLFREILANKNGRFGKQKSILWVQNLLADGLTSHQGEKWVAHRRIMNHAFHLEKLKRMLPAFAACSSELISRWQDSVGADGAQEIDVWPEFQNLTGDVISRSAFGSSFSEGRRIFQLQSEQARNVMKMAKALYFPGYRFLPTELNRRTKANAREVRELLKGIITKRESAMKDGHAVNDDLLGLLLETNIKESQEAGSSKPTMTTKDIIEELKLLYFAGSDTTAVLLTWTMVLLSMHPKWQDRAREEVLRVFGKNSPDFEGINHLKVTCGGEDVGEFKPERFAEGVSRASKDSPALVPFSWGPRICVGQNFALLEAKMALSMILQRFSFGLSPSYTHAPFPIPTLQPQHGAQIKLTKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0628900 | RBH | 1.176180 | 1.364345 | 0.306084 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43851 | RBH | 0.831835 | 0.937763 | 0.087276 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0628900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026030 | RBH | 0.271549 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025670 | RBH | 0.282963 | 0.0 | 0.349622 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026000 | RBH | 0.240792 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025320 | RBH | 0.175079 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025060 | RBH | 16.353554 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0421400 | RBH | 1.338094 | 0.111671 | 0.189001 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024730 | RBH | 0.438483 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0410200 | RBH | 1.9366295 | 0.02159 | 0.0150635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025020 | RBH | 0.683081 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024980 | RBH | 1.265228 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025240 | RBH | 18.205736 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025250 | RBH | 0.932605 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025370 | RBH | 1.003715 | 0.463486 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025130 | RBH | 0.958480 | 0.0 | 0.0 |
