Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0022600 | OGI:01040660 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:24413723-24416828 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagccaccgcgacggcatcccggctgcctggcccccacgccgagccgccaccgaggcctggacgacccaccgcgccatgggctggcgccgggcgaccaggccgagcgagtgagcgggggcgccactgccgctccaggcaggctgcgctgcccgccgcctccgcgacccggccggccacgacgagccgcggccatccgccgcccgcgcccgccgctgacgagccgcctccacaccgagccacagtcgtccgctgcctccgcgcccgtgccgggccggcctagccgcagccggccgccgcctcgccgccttgccgccggctgccaccacgaccgcatgccgtcgcgccgcccaaggcctcctcgcgtcgccgccgcgcagatccaggcgagggagggccggatccggccatgggggctccggatccgccgcctcctccccacctcgccgccgtagctgccatggaccacgccggcggggagcttcgtcgtcttcgactcttcgtccttcgcgccgaggagggagacgctacgaagagaagaaggcctcaccgccgccttccctgcccgcagccggcttcgccgccggcgggctccagcggcaacgaggtagggggagggagggagagaaggcgcgggcggctagggttttttcgcccccgagccgcccgacacgagagctatgcgcgggggaGggggggctgaactgaagttaggaaattaacaacagagggtgtgtttagttcacgctaaaattagaagttttgtttaaattgaaacgatgtgacggaaaatttgaaagtttgtgtatgtaggaaagttttgatgtgatgaaaaaattagaagtttgaagaaaaagtttggaactaaactcggccagaatttccaggcagtgacgcctgtagctttgtattaaattttagatgaaatcaattcttttttttttcctgggaatgatgcgtgtgtccaagctatagcttaattagctagtggcggtgagcctatggagcgttgcgagacaggcattggcactgtgggaagaaaacgaagggtgggagagagcttgagaaggacaggcagatccacacagatggcgagatgtatccatatgaatatgatagtaatatgatgaactgtgtggcagcattgcaaaatgccacatggtaccatggagtaatatgcatcactagagctatatcatgtggcgcatcagtgtccgggagaaaaggcagggtagtgggacacatggaaaacgcggtaattttgacagtaacatactacggttttagtcaggtcaagagttgacagcacgcagctttagttagaactaagtactctccctccgttctcgaataactgacacggttaactatagaggtctcactttgattacaaattacttttaaataattatattatgaatttatgaagtatattttcaagtgtttattaaatttctgtaaaaggacgagcggtcaaaagtttaaaattatatagtggcagcgtaaattatttgagaatgggtggattattttctggtctctattggtcgtagtagaagcaatatgagccgttgatttacatgggtcttatcctattttacgggacagttataccaggcaatgtctaagttcaatgtatgtgcaacgatcagtgcacatatatatacacacacacgagtgatgaatcctgttgactgttgagactgagctgttcggtatctagcgttttcaggggcttaattaggtttatttttcataaagcatccgtacattttctttcTtttcttttcaataaattagacacggccgggccgtccgaccctataagtccaagcgtgccactatcactatggcagataacactagcttgcaacgtcgcttatgcagacgccaataaaactggcattgttgtgctagctttttttcttttttttcttaaaaaaaaaaggaaaattgcattgttgtgctaagctaggggacgacgcctgcaaatatttcaatgcattattgtgctctgattgggctcaacactcaattacgtgttgcttttttctgaatataaattataggagtacaaattaagtacatatatatctgatcacatatttctcatatttgggtacatcgacattgaccatccatcctccataataatattatttttcgtgctagccaagtactgatttggatatataaatgatgaataggatgtttttgagcagaattcattgcctggtaatatttttgcaaggaatttaaaacataggcctactttgaaatggagaaattttaaagaaatgttgcgtaaattaaattaacttctacgaaaagcgtacaaaattctttcgttcgaaaagagctgttcatcccagcgcgattagactagttagtactactaaaggatgaagtactagtatgtagtaggttgaaagtgctttgaaattcaatgtctttattagtatttatttttatctcgcaagacatacgtgtacacaatattatgatatctctagagtaataggctcaaatgtaaaaaagttcacgtgttaattaattagcaataagaaaaatgtatgacatgtcgcccttccactttgacatcttgtcactaagtaagcatcaattatacaccccattaaattgataatgacattcaaaaagtgggattagactatattcatcaccatcataatgagcaaaccagacaagtggatggtaaaaaaacaatgcaaatttgtcatgctgtggaaaatctacttggacctaacataaaaaagctagaggctaactgatccatccattaacattaagAaaaagacatacatatgtaaaagataaatagataattttatctgatcttccgagaaagctctagttagcctggatggttctgtatatgagagattatatatgtaatcttgagatggtgacaacctaattaattaattaattaacaagcaagcatccaggctaataaaccagtgactgctaataaaccagaagtactgtagacaatgcccattgaggtgtccctgaacaattttcaggtctgggtctgctggctctcaaacactaattaagtcagtaaaaaacaccttgtatgtcat
More
|
||||||||||
| CDS seq | atgacatacaagccgcccgcgccttctctccctccctccccctacctcgttgccgctggagcccgccggcggcgaagccggctgcgggcagggaaggcggcggtgaggccttcttctcttcgtagcgtctccctcctcggcgcgaaggacgaagagtcgaagacgacgaagctccccgccggcgtggtccatggcagctacggcggcgaggtggggaggaggcggcggatccggagcccccatggccggatccggccctccctcgcctggatctgcgcggcggcgacgcgaggaggccttgggcggcgcgacggcatgcggtcgtggtggcagccggcggcaaggcggcgaggcggcggccggctgcggctaggccggcccggcacgggcgcggaggcagcggacgactgtggctcggtgtggaggcggctcgtcagcggcgggcgcgggcggcggatggccgcggctcgtcgtggccggccgggtcgcggaggcggcgggcagcgcagcctgcctggagcggcagtggcgcccccgctcactcgctcggcctggtcgcccggcgccagcccatggcgcggtgggtcgtccaggcctcggtggcggctcggcgtgggggccaggcagccgggatgccgtcgcggtggctag
More
|
||||||||||
| Protein seq | MTYKPPAPSLPPSPYLVAAGARRRRSRLRAGKAAVRPSSLRSVSLLGAKDEESKTTKLPAGVVHGSYGGEVGRRRRIRSPHGRIRPSLAWICAAATRGGLGRRDGMRSWWQPAARRRGGGRLRLGRPGTGAEAADDCGSVWRRLVSGGRGRRMAAARRGRPGRGGGGQRSLPGAAVAPPLTRSAWSPGASPWRGGSSRPRWRLGVGARQPGCRRGG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0022600 | OsLaMu_01g0022600.01 | Chr01 | 24413723 | 24416828 | - | NAM | ||
| CDS seq | atgacatacaagccgcccgcgccttctctccctccctccccctacctcgttgccgctggagcccgccggcggcgaagccggctgcgggcagggaaggcggcggtgaggccttcttctcttcgtagcgtctccctcctcggcgcgaaggacgaagagtcgaagacgacgaagctccccgccggcgtggtccatggcagctacggcggcgaggtggggaggaggcggcggatccggagcccccatggccggatccggccctccctcgcctggatctgcgcggcggcgacgcgaggaggccttgggcggcgcgacggcatgcggtcgtggtggcagccggcggcaaggcggcgaggcggcggccggctgcggctaggccggcccggcacgggcgcggaggcagcggacgactgtggctcggtgtggaggcggctcgtcagcggcgggcgcgggcggcggatggccgcggctcgtcgtggccggccgggtcgcggaggcggcgggcagcgcagcctgcctggagcggcagtggcgcccccgctcactcgctcggcctggtcgcccggcgccagcccatggcgcggtgggtcgtccaggcctcggtggcggctcggcgtgggggccaggcagccgggatgccgtcgcggtggctag
More
|
|||||||
| Protein seq | MTYKPPAPSLPPSPYLVAAGARRRRSRLRAGKAAVRPSSLRSVSLLGAKDEESKTTKLPAGVVHGSYGGEVGRRRRIRSPHGRIRPSLAWICAAATRGGLGRRDGMRSWWQPAARRRGGGRLRLGRPGTGAEAADDCGSVWRRLVSGGRGRRMAAARRGRPGRGGGGQRSLPGAAVAPPLTRSAWSPGASPWRGGSSRPRWRLGVGARQPGCRRGG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022940 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022630 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022560 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022550 | RBH | 0.005616 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022780 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022800 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032780 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022610 | RBH | 0.000000 | 0.000000 | 0.570256 |
