Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0020890 | OGI:01067150 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:22784982-22791490 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggttgaaatccggcataggtatggaaaatttcagcattccagatttccactctaatcctgtaggatggttctcatttccgaagcagtacaatagaaattttgaaaatgtgcaattctaagctcgctgatgttgaacgagatatagctagttaatcctagtcggggaagatttcaccaatgttattcgtattgtttgtagcagttatccctgcagataactctgttgatggtttatactgtataagcccctggtttattttccagtacacagtcatgctattgatcttcctttctactgctcctttgatgaatcatgagtatgtttggttgcttccagtccactttacaggaaaaagacttgatggtactttgtttacatccaccatagaagatggcgtgcctctgacttttatattaggacaaggtataactgtaccatactcaatagtcaataccctgaaattactttttagttcttaccgagtcaataaatccataatgcacaccacttgatcagaaccaaagaaaatttacagggaggttaccaagtgatatgagttaagaactctccaatgtttatggtacttactgtttaaccaacctctgttgttaaatcttcttagatattgtaatggttggaaaccttgtgatcatgccattaaccatggatcccagggtttctacacccatcaccactaaaccaaatgattttcagtagtttactcaaacagttactcccaaaaaggtaatacagaaaatgcattagtagcacgtggaccaagcataattgttccccttttattttgtgcaatattcaaatcgtttcacctaacttatttatcattttcttaatgcatcatgaagttctcatgtatgtagttttactgatcttccagatcatctactcatctattaagtgtttatatatatggcgttgttgatttctgcattgcgtaaacttcaacagacctatatgatgcagtgggatttctatcaagtgttaaggactgaatcttttaatgaaaaagtgactttagtgatttggggtctgacatttttgtttcaagccattaaagattctactagaatgtagataacaagattacatggctcatctttcatgtgtgtgtgtgtttaaaaaacctggctcattgggtgtttgtaccactgtaaccatacttttctcaaaaatgagttacacttcgatgaaataaaactaaatactgcttatagagaatgtaatgcaaggcttcagtatggctgttagctcaatgcaagcaggggagaaagctgtattcaccatccctccagaattagcaggcaccaagtctcggtgtcctgctgatatcccagcgaaccttcctcccaaccaagcactacagtttgatgttgagctcatctctcgtatcaccataactgacatcctcgacaatgaaggcatattgAaaaaagactatcaagcgtggagtggggaatgataaaccttgtgatttggatgaagtgcttggtatgaaatagtacattagttcctcccttcatctctctgttttctttagttttgaatttgagaaattaattgtaccaatatttttttcatttatttctgcaatagcgcaacagtgcttgtgtgtttattgagctaatacttttacatttttttttgtagtgaactacaatgcttgcctggaggatgggatgtcagtgtccatgtctgaaggtgttgagttcaaccttgcagaaggtaagaataagttccctttaccatgattgaatgcacttaattgtagaagtaccattttactatgccggtctaatataattgtaaaatctaggcttcttttgtcctgcctttgcacgtgctgtggagactatgacagaaggagaggaagttgttctcattgttaaaccagaatgtaagctcccctccttggatgtaaccttctagttgagtaaaataaacaccaattcttctcatgcaccttatacctcgtaataaattcaataatcaaagcagatagtggcaactaaatcaccaatcggcatctcaaatcttccttccgattatgcatgcacatgtcaggaatatttacaagcttgtctttctgtgtgtcatttttcttttgggataagaggccagaaggcccagcttttatagaaagctagataatgattacggcatcagttcaacagctgggagaaccagcttttacaagaagaagcattctagccaaaaaatggccttacacagtatctaaagagccaaacaggagaagaaaaccagtgagcaaaaggcaatatctatgactacttgcttttttcatcccacgccagtcctgtactcctgtgttgaggtccttgaggagatagaagttgcacagcttctaagatcttgcctgccatcaactcagcttctgcttcttcattttccttcatcagttagaccattgtcttagataaaacatcacactaaaagcaacagttagaggagtggataaaatctgcttcctgaaaatcatatcatttctattcaaccacaacacccaggcagcagcccccagcagcattatcagccctctgctccgtttggagctaggtcggcctactatctcagaaaagaaatgatcaaaagaattaggggctgcattccaggtcagagcatctctaatcacacaccaaaggaactttgcaacagggcatctgaaaatgatatgatcagcatcttctagatcattacagaaaatacacagatcagacccttcccagtttttcttcaccagttgggttgtggattgtattctatccctacatgcaagccagatgaagtgtttcaccttcaggggtatgggagctCcccaaatgtctgcatctctcaagtttttctccccatggaatatgagtattctgtataaatatttagtagagaagcaattagattgaaccacaggccaaaggatagtatctgtttcctctatcagattaataccagtcataatttgttccaactcttcccattctgctacctcactaactaggatgtattgttggttagagatttggtagatgagtgggaatctgatttttaggggacaagactctagccaaacatcagaccaaaagaggatgtgagagccatcacccagtttccatgcacaatttctttggatccaacttttgattgtgtgcaagtttttccagaattgtgaacctccctcatgtttcgattggaagaaacccttctctttcaggtatttcttatagttaatcttctagttaatatatgttaattggtgctctctttctcttgatccctagatggttttggtgaacggggtagaccgtccataggggatgaagctgctgtgccacctgatgcaactctttatgtgtaccttcaattgatgtcatggaaaacagtgagacacattggacagaacgggacaatccttaaaaaaacccttcgcagaggaaacttggaaggacagcacaccgagaatcaagcagtggttggaggtaccttcaagttagctcctaatatggaattctgaacatatatagctcattacctcctgcttggatatcaacatgcctaatgttcacttgcattggcagttcggctgattggtaaactgcatgatggggctgtttttgatcagaggggtcaccaaggagatgagccatttgagtttgtggttgacgaaggttgtattttctacatctttacaaaataaaacttgtttgtttctcataaatttcagctattcttttgaaattgcagagcaggttagtgatggcctagaggaagctgttctgacaatgtgggagggagaggtctccttgttcaccattccaccccagtgtttgcaggatcaacacgtggttgtccctcctggttcttccgtcacctatgaaattgagcttgtctctgttgtaagtgtgtgtatgcagcttgaattagttgccatgatgtgaacaatttgaaactatattttggaaactctacttgacatactggatctgaattaaatttaggacaagcatccctggctcatgagtcaagcagagagtgttgaggctgcagttgagaaggaaaaggagggtgacaaactattcggctcaagcaaatatttgagagcttataggagatattacaaggtactaaactagcatggtggcccgcgcatattgcgcggctagtatcgttatatctttttaaataatagcatatataTttttatattttgttattaaaatatattaaaatgataacataatttttaattttgtactaacttgaccaaactaactgatgtgtaatattcatattgtattttatatacgtgatatttattaattattttagaattctaactttacttaattataaattgtattcctatatagactataaactcatcttctaatatttcttatattttccgaagtcatgttatttacaaatttattctaatatggactctaaatccttctttccatattccttattttaaaatctcgaatttcagttatttctaaattgtatttctatataatctctagattccttttccaatatttcttatttttaattcctaatttctcttatttataaattgtattttttttatatggactctaactcatctttcaatatttctttttttaaaaaaaaattcgaatttcagttatttccaaattgtattcatatatggactttagactctttttctaatatttcttacttttttcaatttcgaattttagcttcttctaagttttattttatctgggctctagattatttttataataTtttttatttttaaacttcgaattttagttttttctaagttgtatttctatatggattctaaattctacttttatttttttAtttttcaattccaaatttcaattagatctaaattttatatgtttttctatatggactctaaacttatctctcaatattccttatctttaatttcgaatttctattatttctaaattgtattcctatatgggctctagtctcctcttccaatattccttattttctaattccgaatttaaactatttttaaattgtatttctatatggactctatatttttctttttcttcgattaatgtgggaatttctagactgtgagagcaaacgtggatgctcttttttctattccttcaataagttaatagataatttaatggtgcaaaaaggaggtcatagtgttttttttctaggaaaaaagtatagcctgttttgtcccaagtatgtattatatgcatccgacaaatgtccagactgaatctgaaaagtctgtttaacttgtttgaaggccagacagatcatactctcgtgctttcgacgaggagacatagatggagaaattaaacaaatgttgatttcctttgccttcaaagctgcagaatgcgcaactcagcttcaacgcttcgaacaagcataccatcgctaccgtgaggtgcttttcttaacaagagaaatagagcatgagttgtgtttgcttcatagtgctacaccttttccaaatgtttacatggtgcaaatggcattgattcattggttgttcttttgcatagttcgctactgttagtaaacgctagcctcctacacacatcaatgagcaactaaaatcttacaatcaaaacaggtattggaatacgaccctggaaatgtgaaagcacaggaaatgtcagggcaggcattccccgaggcttcgcttgtaatagacactgctgcaatgcacagaggtttggaggtactgttttcattcttggtgtctatcgtttatatatatgtgccacatcaactgataaataatattcatccgattaatattatttatgagttcatgtcccggttgatattttcaagcctaaatgcccaattgggttgactcatatcgaccaggacctgaacctcccgtaatactagtacaattcactcaagttggtccattttgttcatacagttttcctatcatcgaaacactcccgctgtcccaagggggttgcgcaattttatttggggcaattgtaaatttaccactgctttgaatcattattgcaagattgtcacaagaactgtcattcgagtggcatccttgtaaaattgaaaaactagtggtaaatttgtaaaagcccctttttatttacacaactaactagtattatacctatcaccttgaacagccgtttcgtccgaaggaacagcattccattggttggacaacgacgacgggggctatatctagcatgaggctaaaacaaggacacaaataccgtggaggcatgatttttgtccctcctattgcaataccaggggccaatgtacctacaagccgtagtccagctacacaagcaacgcgtgttgttaacacaaacagagttacgacaaacatcgagaaccaaattaactctggctccaccaggaagagcctaggttcgtgcttcaggtcctgtttggcacccattgttggccccttgtaa
More
|
||||||||||
| CDS seq | atggttgaaatccggcatagtatggctgttagctcaatgcaagcaggggagaaagctgtattcaccatccctccagaattagcaggcaccaagtctcggtgtcctgctgatatcccagcgaaccttcctcccaaccaagcactacagtttgatgttgagctcatctctcgtatcaccataactgacatcctcgacaatgaaggcatattgAaaaaagactatcaagcgtggatgaactacaatgcttgcctggaggatgggatgtcagtgtccatgtctgaaggtgttgagttcaaccttgcagaaggcttcttttgtcctgcctttgcacgtgctgtggagactatgacagaaggagaggaagttgttctcattgttaaaccagaatatggttttggtgaacggggtagaccgtccataggggatgaagctgctgtgccacctgatgcaactctttatgtgtaccttcaattgatgtcatggaaaacagtgagacacattggacagaacgggacaatccttaaaaaaacccttcgcagaggaaacttggaaggacagcacaccgagaatcaagcagtggttggagttcggctgattggtaaactgcatgatggggctgtttttgatcagaggggtcaccaaggagatgagccatttgagtttgtggttgacgaagagcaggttagtgatggcctagaggaagctgttctgacaatgtgggagggagaggtctccttgttcaccattccaccccagtgtttgcaggatcaacacgtggttgtccctcctggttcttccgtcacctatgaaattgagcttgtctctgttgacaagcatccctggctcatgagtcaagcagagagtgttgaggctgcagttgagaaggaaaaggaggaatgcgcaactcagcttcaacgcttcgaacaagcataccatcgctaccgtgaggtattggaatacgaccctggaaatgtgaaagcacaggaaatgtcagggcaggcattccccgaggcttcgcttgtaatagacactgctgcaatgcacagaggtttggagcattccattggttggacaacgacgacgggggctatatctagcatgaggctaaaacaaggacacaaataccgtggaggcatgatttttgtccctcctattgcaataccaggggccaatgtacctacaagccgtagtccagctacacaagcaacgcgtgttgttaacacaaacagagttacgacaaacatcgagaaccaaattaactctggctccaccaggaagagcctaggttcgtgcttcaggtcctgtttggcacccattgttggccccttgtaa
More
|
||||||||||
| Protein seq | MVEIRHSMAVSSMQAGEKAVFTIPPELAGTKSRCPADIPANLPPNQALQFDVELISRITITDILDNEGILKKDYQAWMNYNACLEDGMSVSMSEGVEFNLAEGFFCPAFARAVETMTEGEEVVLIVKPEYGFGERGRPSIGDEAAVPPDATLYVYLQLMSWKTVRHIGQNGTILKKTLRRGNLEGQHTENQAVVGVRLIGKLHDGAVFDQRGHQGDEPFEFVVDEEQVSDGLEEAVLTMWEGEVSLFTIPPQCLQDQHVVVPPGSSVTYEIELVSVDKHPWLMSQAESVEAAVEKEKEECATQLQRFEQAYHRYREVLEYDPGNVKAQEMSGQAFPEASLVIDTAAMHRGLEHSIGWTTTTGAISSMRLKQGHKYRGGMIFVPPIAIPGANVPTSRSPATQATRVVNTNRVTTNIENQINSGSTRKSLGSCFRSCLAPIVGPL |
||||||||||
| Function | 70 kDa peptidyl-prolyl isomerase [UniProtKB/Swiss-Prot:Q43207] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0020890 | OsLaMu_01g0020890.01 | Chr01 | 22784982 | 22791490 | + | NAM | ||
| CDS seq | atggttgaaatccggcatagtatggctgttagctcaatgcaagcaggggagaaagctgtattcaccatccctccagaattagcaggcaccaagtctcggtgtcctgctgatatcccagcgaaccttcctcccaaccaagcactacagtttgatgttgagctcatctctcgtatcaccataactgacatcctcgacaatgaaggcatattgAaaaaagactatcaagcgtggatgaactacaatgcttgcctggaggatgggatgtcagtgtccatgtctgaaggtgttgagttcaaccttgcagaaggcttcttttgtcctgcctttgcacgtgctgtggagactatgacagaaggagaggaagttgttctcattgttaaaccagaatatggttttggtgaacggggtagaccgtccataggggatgaagctgctgtgccacctgatgcaactctttatgtgtaccttcaattgatgtcatggaaaacagtgagacacattggacagaacgggacaatccttaaaaaaacccttcgcagaggaaacttggaaggacagcacaccgagaatcaagcagtggttggagttcggctgattggtaaactgcatgatggggctgtttttgatcagaggggtcaccaaggagatgagccatttgagtttgtggttgacgaagagcaggttagtgatggcctagaggaagctgttctgacaatgtgggagggagaggtctccttgttcaccattccaccccagtgtttgcaggatcaacacgtggttgtccctcctggttcttccgtcacctatgaaattgagcttgtctctgttgacaagcatccctggctcatgagtcaagcagagagtgttgaggctgcagttgagaaggaaaaggaggaatgcgcaactcagcttcaacgcttcgaacaagcataccatcgctaccgtgaggtattggaatacgaccctggaaatgtgaaagcacaggaaatgtcagggcaggcattccccgaggcttcgcttgtaatagacactgctgcaatgcacagaggtttggagcattccattggttggacaacgacgacgggggctatatctagcatgaggctaaaacaaggacacaaataccgtggaggcatgatttttgtccctcctattgcaataccaggggccaatgtacctacaagccgtagtccagctacacaagcaacgcgtgttgttaacacaaacagagttacgacaaacatcgagaaccaaattaactctggctccaccaggaagagcctaggttcgtgcttcaggtcctgtttggcacccattgttggccccttgtaa
More
|
|||||||
| Protein seq | MVEIRHSMAVSSMQAGEKAVFTIPPELAGTKSRCPADIPANLPPNQALQFDVELISRITITDILDNEGILKKDYQAWMNYNACLEDGMSVSMSEGVEFNLAEGFFCPAFARAVETMTEGEEVVLIVKPEYGFGERGRPSIGDEAAVPPDATLYVYLQLMSWKTVRHIGQNGTILKKTLRRGNLEGQHTENQAVVGVRLIGKLHDGAVFDQRGHQGDEPFEFVVDEEQVSDGLEEAVLTMWEGEVSLFTIPPQCLQDQHVVVPPGSSVTYEIELVSVDKHPWLMSQAESVEAAVEKEKEECATQLQRFEQAYHRYREVLEYDPGNVKAQEMSGQAFPEASLVIDTAAMHRGLEHSIGWTTTTGAISSMRLKQGHKYRGGMIFVPPIAIPGANVPTSRSPATQATRVVNTNRVTTNIENQINSGSTRKSLGSCFRSCLAPIVGPL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0562400 | SBH | 0.0 | 0.0 | 0.293371 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g38140 | RBH | 0.0 | 0.0 | 0.103959 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0562400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0021780 | RBH | 0.0 | 0.0 | 0.208102 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021390 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0021700 | RBH | 0.0 | 0.0 | 0.823553 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020860 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0360900 | RBH | 0.1333495 | 0.032521 | 0.4808655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020840 | SBH | 0.0 | 0.0 | 0.146746 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0352500 | RBH | 0.090878 | 0.087899 | 1.5041355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020950 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020860 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021100 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021040 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020270 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019990 | RBH | 0.0 | 0.0 | 0.667775 |
