Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0015580 | OGI:06026000 | 12/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:14358947-14360388 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacctttcaagagccctagtgtgcttgtatgtccttgtgcagattctagcggcagcaataagtaaacaaggtggagCcccattaaagtccagatgcacctccattttagcaatcgatgtccaacccaacagagctagtatgtgcagatattggaacaattttaataacttggaatgctcttgtttaatgaaggagagctcaactaaaacatcatgaatctttatattagtgcaggaattcctttgtggctggataactagagcagtctgaaataaatcagcatgcacacatgctaattcccttgagattttaatgtggaaaccaaaggttgtaggctcagatgctagtccagcatacttgtgctgttcaatctgaacacatgactgcaattgcttcagttcaacccagctctcatcaagtaagggtgcattttctggactccatgcctcaagaaaagaaccacattttagtggagcaaggacaaagatcatagagacaggctccaaatgacaaatgacccaacaagtgttcaacctcaatttaaatgagcattttactcctagaaaccaaaccatatgaattccttgtccatcaatttgctcttgcatgacagaaattccaatgtcaaacccccttccatgtttctgatccacacatgcttccttcttagcaactgctatatagctgacccacacacacaactcttcaggaactccgacactgataacaagctcaatgttccagcaattatctcccaggtgaaagtattggcattgaagccaatcattcaacaaaatcTtgtgtaggtgaactttgctatcaccaggatcccacactaatggcaccaacatgattgtaagtgtttcagtggttcccctagtggaaaatgcttgtcaatcaggattccaaaccactgctcgaatgatgcgttaaagttggaggtggccatggattgacatcaaagtgcttgtgcggaccatgccatttcactgaacatcttgcgggtgtcaatgtggccagcttgcggttggcattcatccttgatgagaagttgtccatagactggacatatgctggaactaccttggacgcagccgtcatggcctggaacatgacctcagcttggtcatggatgccacccttgacgtcgaggctcaatgtcgaacacttgatgtgtgtctccttgggacaaacaagggcgtcgatgtcggtggtgcatgtgatgtcctgacaaatggaggccagagaagtggacgtgcacgaaaccatcgcagccacggtgaggttaggggtggaacaattcatcgaacacttggcgggcatcaccttgggaTggttgtgattgttggtgtaggttgcgccgatggcatcttcaacagctaccagctccatagaggtcgtgtcaggtgtggcgtgtgtaaccaccacaaccacaggggga
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| CDS seq | atggagctggtagctgttgaagatgccatcggcgcaacctacaccaacaatcacaaccAtcccaaggtgatgcccgccaagtgttcgatgaattgttccacccctaacctcaccgtggctgcgatggtttcgtgcacgtccacttctctggcctccatttgtcaggacatcacatgcaccaccgacatcgacgcccttgtttgtcccaaggagacacacatcaagtgttcgacattgagcctcgacgtcaagggtggcatccatgaccaagctgaggtcatgttccaggccatgacggctgcgtccaaggtagttccagcatatgtccagtctatggacaacttctcatcaaggatgaatgccaaccgcaagctggccacattgacacccgcaagatgttcagtgaaatggcatgtgtgggatcctggtgatagcaaagttcacctacacaAgattttgttgaatgattggcttcaatgccaatactttcacctgggagataattgctggaacattgagcttgttatcagtgtcggagttcctgaagagttgtgtgtgtgggtcagctatatagcagttgctaagaaggaagcatgtgtggatcagaaacatggaagggggtttgacattggaatttctgtcatgcaagagcaaattgatggacaaggaattcatatggtttggtttctaggagtaaaatgctcatttaaattgaggttgaacacttgttgggtcatttgtcatttggagcctgtctctatgatctttgtccttgctccactaaaatgtggttcttttcttgaggcatggagtccagaaaatgcacccttacttgatgagagctgggttgaactgaagcaattgcagtcatgtgttcagattgaacagcacaagtatgctggactagcatctgagcctacaacctttggtttccacattaaaatctcaagggaattagcatgtgtgcatgctgatttatttcagactgctctagttatccagccacaaaggaattcctgcactaatataaagattcatgatgttttagttgagctctccttcattaaacaagagcattccaagttattaaaattgttccaatatctgcacatactagctctgttgggttggacatcgattgctaaaatggaggtgcatctggactttaatgggGctccaccttgtttacttattgctgccgctagaatctgcacaaggacatacaagcacactagggctcttgaaaggtga
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| Protein seq | MELVAVEDAIGATYTNNHNHPKVMPAKCSMNCSTPNLTVAAMVSCTSTSLASICQDITCTTDIDALVCPKETHIKCSTLSLDVKGGIHDQAEVMFQAMTAASKVVPAYVQSMDNFSSRMNANRKLATLTPARCSVKWHVWDPGDSKVHLHKILLNDWLQCQYFHLGDNCWNIELVISVGVPEELCVWVSYIAVAKKEACVDQKHGRGFDIGISVMQEQIDGQGIHMVWFLGVKCSFKLRLNTCWVICHLEPVSMIFVLAPLKCGSFLEAWSPENAPLLDESWVELKQLQSCVQIEQHKYAGLASEPTTFGFHIKISRELACVHADLFQTALVIQPQRNSCTNIKIHDVLVELSFIKQEHSKLLKLFQYLHILALLGWTSIAKMEVHLDFNGAPPCLLIAAARICTRTYKHTRALER |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0015580 | OsLaMu_01g0015580.01 | Chr01 | 14358947 | 14360388 | - | NAM | ||
| CDS seq | atggagctggtagctgttgaagatgccatcggcgcaacctacaccaacaatcacaaccAtcccaaggtgatgcccgccaagtgttcgatgaattgttccacccctaacctcaccgtggctgcgatggtttcgtgcacgtccacttctctggcctccatttgtcaggacatcacatgcaccaccgacatcgacgcccttgtttgtcccaaggagacacacatcaagtgttcgacattgagcctcgacgtcaagggtggcatccatgaccaagctgaggtcatgttccaggccatgacggctgcgtccaaggtagttccagcatatgtccagtctatggacaacttctcatcaaggatgaatgccaaccgcaagctggccacattgacacccgcaagatgttcagtgaaatggcatgtgtgggatcctggtgatagcaaagttcacctacacaAgattttgttgaatgattggcttcaatgccaatactttcacctgggagataattgctggaacattgagcttgttatcagtgtcggagttcctgaagagttgtgtgtgtgggtcagctatatagcagttgctaagaaggaagcatgtgtggatcagaaacatggaagggggtttgacattggaatttctgtcatgcaagagcaaattgatggacaaggaattcatatggtttggtttctaggagtaaaatgctcatttaaattgaggttgaacacttgttgggtcatttgtcatttggagcctgtctctatgatctttgtccttgctccactaaaatgtggttcttttcttgaggcatggagtccagaaaatgcacccttacttgatgagagctgggttgaactgaagcaattgcagtcatgtgttcagattgaacagcacaagtatgctggactagcatctgagcctacaacctttggtttccacattaaaatctcaagggaattagcatgtgtgcatgctgatttatttcagactgctctagttatccagccacaaaggaattcctgcactaatataaagattcatgatgttttagttgagctctccttcattaaacaagagcattccaagttattaaaattgttccaatatctgcacatactagctctgttgggttggacatcgattgctaaaatggaggtgcatctggactttaatgggGctccaccttgtttacttattgctgccgctagaatctgcacaaggacatacaagcacactagggctcttgaaaggtga
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| Protein seq | MELVAVEDAIGATYTNNHNHPKVMPAKCSMNCSTPNLTVAAMVSCTSTSLASICQDITCTTDIDALVCPKETHIKCSTLSLDVKGGIHDQAEVMFQAMTAASKVVPAYVQSMDNFSSRMNANRKLATLTPARCSVKWHVWDPGDSKVHLHKILLNDWLQCQYFHLGDNCWNIELVISVGVPEELCVWVSYIAVAKKEACVDQKHGRGFDIGISVMQEQIDGQGIHMVWFLGVKCSFKLRLNTCWVICHLEPVSMIFVLAPLKCGSFLEAWSPENAPLLDESWVELKQLQSCVQIEQHKYAGLASEPTTFGFHIKISRELACVHADLFQTALVIQPQRNSCTNIKIHDVLVELSFIKQEHSKLLKLFQYLHILALLGWTSIAKMEVHLDFNGAPPCLLIAAARICTRTYKHTRALER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g16140 | SBH | 0.325891 | 0.024659 | 0.045285 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006580 | SBH | 0.000000 | 0.000000 | 0.512906 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010900 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019830 | RBH | 1.378538 | 2.567137 | 2.327668 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006440 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011130 | SBH | 0.141049 | 0.0 | 0.630300 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0152100 | SBH | 0.515463 | 0.665861 | 0.5155465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010810 | SBH | 0.0 | 0.000000 | 0.167452 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0149100 | SBH | 0.8197075 | 0.624525 | 4.2110455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010810 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010960 | SBH | 0.025586 | 1.683969 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010780 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006510 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010890 | RBH | 0.0 | 1.151743 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010920 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010780 | SBH | 0.0 | 0.0 | 0.0 |
